XLOC_026602 (cog1)


Basic Information

Item Value
gene id XLOC_026602
gene name cog1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 36401105 ~ 36420397 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051823
tggtaatgttatgtttgttaaataactgtatttactattattctgtatgtttaaaaccagcagattaTACTATGTATTTAACATGTCATATACTTACtcgtcctaagacaagaatgggtattgttttggttttatgtcaaactactgtaggttttaggttgtcTACAGCAGGTATAGGCTACCTATATCTTaatattggtagtcagagttattttaatgacccaaatcaagtAAAATGTCTCTTACTCAATTACTTTTAGCAttcaaaagtcaaatttaagtacataaaatacagtttcctacaacaaaattttgtcttgtgaaaATGTCCAGTGGTTGGtgagaaaaaaagttaatgtgaagttatatatataaaagaagttggacaagttgtcataatatttagtcatattaatatgttaattgtataataaatatataatattaaattacataaaataattaaaagaacaaatgctggaccttttggccgTAGGGGGTGGCTCGTTCGACGCCCCCCACCCTGGCTACGGGCATGGGAATGACAAGCTCGActtgtattataatattatataatattgacTTGACATTTTTAGGGATTTTACAGTGTTGTAGTACCAAACCTCCTCTAAAAGTGTCGCTGTCTCACTTCATGCATGCGAGGATTGACCTCTGACTCTTTGTTTACGTGGAAGGAGAGCTGTTCTTGCTTCCGGGTTCTTATTTCTGCAGGTAACTGACCAGTTTTAAAGAGATGGCTACGGTACCGGCCCAGTCTCTACGGGTGTCAGAGATTAAAGACCCCACCGTTTTATTTGAACGGTACGGAACGGATGAGATCCGCGCTGTGGAGAGGAAAGTGCGCGGAGAGATTGAGCAGAAGAAGGAGGAACTCCGGCAGATGGTCGGTGAGCGGTACCGAGACTTGATCGATGCCGCTGACACGATCGGTGAGATGAGACAGTGCTCGGAAAGTGTCGTGCATTCCATCCAGGACATGTACCGGTACTGCCATAAACTCAAACAGGCCAAACAGACCCCGCAGTCCAGCAGCAGAGCAGAGCAGGGTCAGAAGCAGTCGCAGGAGAAGTTCTACACAATGGCGTCCCAGATAAAGCTCCTCCTTGAAATCCCGGAGCGCGTCTGGAGCGCTATGGAGTCCTCGCAGTACCTGCAGGCCACACAGCTCTACCTGCTGTGCTGTCACCTTCATAGCCAGCTACAACTGGAGGGTGGAGGTCATCAGTACAGCCCCGTCCTCTCTCGCTTTCCCATCCTGGTGCGCCAGGTCGCAGCTGCAGGTCATTTCAGGTCTACAATCTTGCTGGAGAGTAAGTCAGTGCTGCGCGGCAGGGCGGTGTCCGATCAGGCGATCGCTGAAGCGCTAGTCTCCACCATGCTCCTGGAGGACAGCTCACCTCGACAGGCGCTTGCTGATTTCCTGCTGGCTAGGAAAGCCTCCATTCAGCAACTGCTTAATCAGCCTCAGCATGgtGCTGGGGTTAAAGCACAGGTTTGTTCTTTAGTGGAGCTGCTGGTTACGACTCTGTACCAGGCGTATGCTGTGTTTTATGTGCCTCCAGAGGGACAAGTGTCTGATACCGGTTTGGGCTGTGGCCTTCTTTTCACCACTTTGGAGAATGTAACCTCCAACACCTCCTCTGGTAAAGAGAAGAAGGTCCTGGATAAGGAGATGAGCACAGGCAGCTGGTTTAAACACCTTCCTCCTTCAGTGATGAATTTCCAGCCGGTTCTTCGGACATTAGCGCAGCCCATACAGAGAGAGCAGCTCAGAGACACCCTGCAGCAGTGGATTGACACCTGTAAGGAGGATATCCGCAGTGGAGTCAGCAGTCTTCTGGTCTATGTTAAGAGTCTGAAGGGTCTGGCTGCGATTAGAGATGCCGTGTGGGAGCTGCTCAGTAGTGAATCCATCAGTCAGCACTGGAGTACTGTGTGTCAGTCCTTGCTCGAGCAACCTCTGGCCTTGTGGGACGACCTTTTACAGCAGCTCTTCCTGCGGAGACTTCAGGTGATCACGCAGGAGGGCACAGAAGGGATCTCCAGCAGCTCCAGACAGCTGTTATCCTCAGCTCTGCGGGATCTGCAGGGTCAAGCCTCTGCCGGGAGCTTCAGTCGGGGGGCTCAGTACGAGAGTGACGTCGGAGCGTTCCTGTGGTCCGAGTCTCAGAGTGACCTGCTCAGTGACACAGCCTGGGTGAGCGTAGCCCAACGCAGTCCACAACAAAAGAGTGGCCTGTCCATGAAGACTCAGGCCCTCACACCCTGCGTCCAGACCTTCTGTTCCTCGCTGGACTCCAAACTCAAAGCCAAGCTAGAAGATCTGCAACACTACTTACCCTCTGACACAAATGGCAAGGAGACTTTAGAGAAGTACACAGTCTCGTCGAGTACACCTATAAATCGTTTTATGGATGCTGAAGCGGTGGAGGACATTCTTAGAGATCACTGCCTTGCGTGCGTTCGGGACGTCCTGGCTAGTGTGCGCTCTGAGCTGGCTAACGCTCAGGCTGAGACCAGCAGCCACAGCCAGTTGAGTTCAGTGCTGTTTATGGCCAGATTGTGCCAGTCCATGGGGGAGCTGTGTCCTAGTCTGAAGCAGTGTATCCTAGGAAAGCAGGGGGGTGTGGATGTTGTGAGTAGAGGCACACCACGACAGAGCAAGAAGCTGGGGAAAAGTGGTACTGCCAAAGCAGCCGATGTGAGCCCAGCTCAGGCTAAGTGGAGCTGTCTGAAAGAGGAGCTGCTGTCCTGCAGTATGGATGCCTATGGAATCTGGAGCTCAGCACTCACCAGAGCACTTGTGGGGAGTTTTGCTGCAACTCTCCATGCTGAAAATGCCGGATCCATCCTGGGTACTGCAACTAATTGGGAAGAGCTAGAAATACAGGAAGAGGCAGAGTCAGGAAACAGTGTAATGTCCAAAATACGCCTTCCTGTGCAGCCATCATGGTATGTTCAGTCGTTACTCTTCCACCTGTGCCTTGAGGTCAATCGAGTCGGAGGTCATGCTTTACCAAAAGTAACTCTGTTGGACATCCTAAAGGGTTGTCTAGACCAGGCCGTGAGCGAGTATGAAAGACTCACTCAAGACTCACAGAGCAAGGACACAGGCCTCCCCATGACCCAGAACAGAGCACTACAGCTGCTGTTTGACCTCCGCTATCTCACTGTCACTTTAGGGTCTCGTCTTGAGGAGGGTAGGAGCTCCCGCTCTCAGCAAGACCCAAGGGTCCAGCAGGTCTGCGACTCCCTGGAAAGTCACATCGATCCCTTTGACCTGGACGTTTTTACTCCACATCTGAACAGCAACCTTAACAGACTCTCACAAAGGACATCTGTGTTGTTAGGGCTGTTGACGGGCACAGAGAAGCAGTTCACGTCTAGGAGCAACAGCATCAACTCTCAGGAACCATATAACATCCTTCCTTTGGCCAGCAGTCAGATCCGGTTTGGTTTGCTGCCACAGAGTATGACAAACTCCCGCAAGACTAATTCTGCCACACATGGAGCAGACATCACTAGACCACTGGTAGGCTGCTTATAATGTACATGGATTTCATGAGATAGAATTTGTCATAATTACATCTGTTTTAAAAGCAAAGTAAACATTATGCGAAACAGAAAGAGTTGAGATGGTGTTTTAGTTTTCATGGCTTTCTACCTATGCTCCCAGTTTTTCATGGAGTAGAACTGCTGGATCTGGAGGCGATAGGTGATGTTATAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAATAGTTTGGTATATTAACCTTCGGCCTACCCCTCAATCAACTTTGGTTTTAATAAGAAAaggtttgagcacccctggtctaaacagaATGTTCCCTAATGGTCATTTTTAGCTTCTCAATTTGCAACCATAAAATAACATTCCCAGAACGTTGTGGAAATCAAAAGCTGTGAGCTGAGGGTTTGTTCAAATAGAAAAGCAAGGTAAATAAATATAGGGCTATATTAATTATCTTCTATTATGCATCCATTATAAACCATCACACATCAATCACCATGCTGactttaattattttacagtaaaaagatACATGCATTTACTGTAACTACTGCACACATACAAAACATGCTGACGCTATAATGGGAAACAGAGACTGAATATAGTGTaaaccaatggtctcaaactcaattcctgaaggctgcagctctgcatagtttagcttcaaccacctccaactcacacctgttAATAGTCTattagtcttgaacaccttcattattccgatcagctgtgtttgattagggttggagcaaaactgtgcagagctgcggccctccaggaatccagtttgagacctatagtgtaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgaacagaatcagtgcatgaaaataaatgtgtaatttagCCAACTACAAAAATATACTTTGGACATAATTATAGGAATTAGCTATTTAGCACTCGTGTATATATACAAAGCTGTCAGTTATTTTATATCTTCTTGGTATGGATTTAGTGTATAGCTCTATTATATGAGACTTTACACTGGACCTGTACATGCGGAGCACCACAGAGTCTTTATTTACTGACTGTCTGTTTTTCCAGACCTAACTGAGTTTCTTCATTCTGTTGAACACGTATATTTAAATTtgaaagaatgctggaaaccgatAGCCATTGACATATagagtgtttgttttttctactgttaatggttacaggtttgcaacattcttcataatatcttctacTTTGTTCGACAGAAAACAGAAACTTGTACAGTTTTGTAATGACGTAAGATTGAAAAAAAATCGGACTAGATGACCAAATATGGCAAACTATCCTGTTAAACCATTTCTgggtaacttttaaaaaatattgttatccGTCAGATTGTAGGTGTAGTATTTGCAGCGAGTCTCCTATTTGCGGTCTAGTTTGCTGGCCATCAGTTTTTTGATGTCGACGGGTCCTGCTGCGGCCGCGGCCTTTGCTTTCTCCTCCTGCTCCTTCTGGTAGGTGATGATGGGGCTGATGCTCGGCCGTCGGTTCCTCATGTTCTGCTCCAGCTGCGCTTCACTGAACAACAGAAGAGAACAGACCTTTTTATTGCAAAATACTGCAAGGTCGGGggcatttgttttatgtttcttCTGATCCAGAAATTgatatacagtggggaaaataagtattaaacatgtcatgttttttttcctgga
>TCONS_00051824
GGCTACGGTACCGGCCCAGTCTCTACGGGTGTCAGAGATTAAAGACCCCACCGTTTTATTTGAACGGTACGGAACGGATGAGATCCGCGCTGTGGAGAGGAAAGTGCGCGGAGAGATTGAGCAGAAGAAGGAGGAACTCCGGCAGATGGTCGGTGAGCGGTACCGAGACTTGATCGATGCCGCTGACACGATCGGTGAGATGAGACAGTGCTCGGAAAGTGTCGTGCATTCCATCCAGGACATGTACCGGTACTGCCATAAACTCAAACAGGCCAAACAGACCCCGCAGTCCAGCAGCAGAGCAGAGGGTCAGAAGCAGTCGCAGGAGAAGTTCTACACAATGGCGTCCCAGATAAAGCTCCTCCTTGAAATCCCGGAGCGCGTCTGGAGCGCTATGGAGTCCTCGCAGTACCTGCAGGCCACACAGCTCTACCTGCTGTGCTGTCACCTTCATAGCCAGCTACAACTGGAGGGTGGAGGTCATCAGTACAGCCCCGTCCTCTCTCGCTTTCCCATCCTGGTGCGCCAGGTCGCAGCTGCAGGTCATTTCAGGTCTACAATCTTGCTGGAGAGTAAGTCAGTGCTGCGCGGCAGGGCGGTGTCCGATCAGGCGATCGCTGAAGCGCTAGTCTCCACCATGCTCCTGGAGGACAGCTCACCTCGACAGGCGCTTGCTGATTTCCTGCTGGCTAGGAAAGCCTCCATTCAGCAACTGCTTAATCAGCCTCAGCATGgtGCTGGGGTTAAAGCACAGGTTTGTTCTTTAGTGGAGCTGCTGGTTACGACTCTGTACCAGGCGTATGCTGTGTTTTATGTGCCTCCAGAGGGACAAGTGTCTGATACCGGTTTGGGCTGTGGCCTTCTTTTCACCACTTTGGAGAATGTAACCTCCAACACCTCCTCTGGTAAAGAGAAGAAGGTCCTGGATAAGGAGATGAGCACAGGCAGCTGGTTTAAACACCTTCCTCCTTCAGTGATGAATTTCCAGCCGGTTCTTCGGACATTAGCGCAGCCCATACAGAGAGAGCAGCTCAGAGACACCCTGCAGCAGTGGATTGACACCTGTAAGGAGGATATCCGCAGTGGAGTCAGCAGTCTTCTGGTCTATGTTAAGAGTCTGAAGGGTCTGGCTGCGATTAGAGATGCCGTGTGGGAGCTGCTCAGTAGTGAATCCATCAGTCAGCACTGGAGTACTGTGTGTCAGTCCTTGCTCGAGCAACCTCTGGCCTTGTGGGACGACCTTTTACAGCAGCTCTTCCTGCGGAGACTTCAGGTGATCACGCAGGAGGGCACAGAAGGGATCTCCAGCAGCTCCAGACAGCTGTTATCCTCAGCTCTGCGGGATCTGCAGGGTCAAGCCTCTGCCGGGAGCTTCAGTCGGGGGGCTCAGTACGAGAGTGACGTCGGAGCGTTCCTGTGGTCCGAGTCTCAGAGTGACCTGCTCAGTGACACAGCCTGGGTGAGCGTAGCCCAACGCAGTCCACAACAAAAGAGTGGCCTGTCCATGAAGACTCAGGCCCTCACACCCTGCGTCCAGACCTTCTGTTCCTCGCTGGACTCCAAACTCAAAGCCAAGCTAGAAGATCTGCAACACTACTTACCCTCTGACACAAATGGCAAGGAGACTTTAGAGAAGTACACAGTCTCGTCGAGTACACCTATAAATCGTTTTATGGATGCTGAAGCGGTGGAGGACATTCTTAGAGATCACTGCCTTGCGTGCGTTCGGGACGTCCTGGCTAGTGTGCGCTCTGAGCTGGCTAACGCTCAGGCTGAGACCAGCAGCCACAGCCAGTTGAGTTCAGTGCTGTTTATGGCCAGATTGTGCCAGTCCATGGGGGAGCTGTGTCCTAGTCTGAAGCAGTGTATCCTAGGAAAGCAGGGGGGTGTGGATGTTGTGAGTAGAGGCACACCACGACAGAGCAAGAAGCTGGGGAAAAGTGGTACTGCCAAAGCAGCCGATGTGAGCCCAGCTCAGGCTAAGTGGAGCTGTCTGAAAGAGGAGCTGCTGTCCTGCAGTATGGATGCCTATGGAATCTGGAGCTCAGCACTCACCAGA

Function

symbol description
cog1 Predicted to act upstream of or within intra-Golgi vesicle-mediated transport and protein transport. Predicted to be located in membrane. Predicted to be part of Golgi transport complex. Predicted to be active in Golgi apparatus. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIg. Orthologous to human COG1 (component of oligomeric golgi complex 1).

GO:

id name namespace
GO:0006891 intra-Golgi vesicle-mediated transport biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0017119 Golgi transport complex cellular_component

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-050302-128 Predicted to act upstream of or within intra-Golgi vesicle-mediated transport and protein transport. Predicted to be located in membrane. Predicted to be part of Golgi transport complex. Predicted to be active in Golgi apparatus. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIg. Orthologous to human COG1 (component of oligomeric golgi complex 1).

Ensembl:

ensembl_id ENSDARG00000105131

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051823 False 5351 mRNA 0.45 13 36401105 36420397
TCONS_00051824 True 2059 mRNA 0.55 7 36409593 36419641

Neighbor

gene id symbol gene type direction distance location
XLOC_026601 gna13b coding downstream 36202 36332579 ~ 36364903 (-)
XLOC_026600 NA coding downstream 77480 36320239 ~ 36323625 (-)
XLOC_026599 prkar1aa coding downstream 128435 36262593 ~ 36272670 (-)
XLOC_026598 rac3a coding downstream 141003 36248851 ~ 36260102 (-)
XLOC_026597 gps1 coding downstream 154130 36234060 ~ 36246975 (-)
XLOC_026603 rogdi coding upstream 7591 36427988 ~ 36440705 (-)
XLOC_026604 glyr1 coding upstream 20909 36441306 ~ 36458165 (-)
XLOC_026605 ppl coding upstream 39393 36459790 ~ 36481986 (-)
XLOC_026606 NA coding upstream 162703 36583100 ~ 36587136 (-)
XLOC_026607 rrn3 coding upstream 169030 36589427 ~ 36602500 (-)
XLOC_026588 NA non-coding downstream 826654 35565128 ~ 35574451 (-)
XLOC_026585 NA non-coding downstream 1453044 34947402 ~ 34948061 (-)
XLOC_026580 NA non-coding downstream 1759132 34641048 ~ 34641973 (-)
XLOC_026572 NA non-coding downstream 2259924 34139637 ~ 34141181 (-)
XLOC_026612 FO744883.1 non-coding upstream 335636 36756033 ~ 36756149 (-)
XLOC_026617 NA non-coding upstream 533228 36953625 ~ 36954088 (-)
XLOC_026618 CT573704.1 non-coding upstream 547474 36967871 ~ 36967993 (-)
XLOC_026619 NA non-coding upstream 549006 36969403 ~ 36972222 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00013192 NA coding CM030125.1 CM030125.1 23985127 ~ 23995256 (-)