LOC110531484 (LOC106577912)


Basic Information

Item Value
gene id LOC110531484
gene name LOC106577912
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 12595885 ~ 12635228 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987361.1
GAAAGGCATGTTAAAACCATCATGCTATGTGGATTTTAGGATGGGATAAGTACACCTTTTTATTTAATGATTTTAGTCTTATCCTGAGGTTGAAGTTCTAAACATAAGCTACCTacaaaaagtattttgtcagccatttacaaagtatttatttttgtattttaatttGATGTATTTAtcagggatccccattagctgtcaAGTATTAGGGTTaggtcaaggcagcagctactattcctgagGTCCAATGTAGGTATCTGTAGCTCAGCTGTAGTACAACTTCACTTTATGCAACAGTGTAACCAACCTTCCATCTGAAGTACCATCTGAAGCATTCCACCGCATATACAAAACGTTGAGCTCTCAGCTCTCTATAAGAACTAGAAACAGAGACTGAGATAAGCAGCTTACTTTGTGGCACGCAGTGAATAATGTTTTGCCTACTGTTTTTTCTCACTCTAAGACGATAGCATACCCGATGAAGAAAACTAAATTGACCTGTACACAGAATAAGTGTCACTTATAATAAATCATTGTAGTTTGGACAACAGTTACCTGTGTGCGCCTGCGCTATGATGGCATTAGCGTGGGGCTGTGCGGAGATGGCCAATCACATCACAGACGAGGTAGGCTACCGTAACCCACCAACCGGGCCTGCTGGGAGGCGCTTGGCTAGAGCGCAGCTTTGGGTGAGCTGGGACAGCTCAAGTCCGCAAGGGCGACAGACCGACAATCAGGGAGTGTGACGAGCAGCAAGTCATCCGTGTCACTCTCGTCTCTGTTGCTTCCCAGCAAGATGACGGACGTGGAGCTGATGAAGAGGATGTTACGGGCGGTGCTGGCGGCCAATAAGAGCGGGCCCGGGGTGTCTTTGTCTCGCCTCCAGTCTGAATACAAAGCTCTGACTGGTGAACAGATCCCTCATAAACAGATGGGTCATGCCAGTCTGGACACCCTGCTGCACAGCATTCCCAGCGTGGTTCACATGGAGCGCAACCGCActggggagATGGTGTGTTTCGCCTCAGTCTCCAGCGAGACGGCCCACGTTGCCAAACTGGTGGCTCGACAGCGTACCTCCAAGACGACTGGGCGACCCCAAATGGTCAACTGTCAGATGAGGGTCAAACCGGCCGCCCCTCTCATCCTCAatgCCAAGCCCAGAACCTCTCTGAGACAGCCAGACCACATGGGTCGCGGTGTGGGGCGAGGAGGAGGTGGGGGCGGCCGAGGATTGGGAGTCCAGCATGGAGACTTCAGACAGGGGAGGGACATGAGGGACACCCAATCAGAGGGAAAGAGCAGTCAGAGCTCCAACCAGAACAAACCAATCAATCAGAACACCCCTGCTACCAGGAAGTCCTATGTGCCCTCTGAGAGGTCAGACAAAAGGATGACCCTACCGTCACTGTTCCAGAAGGAAGTGCACACTCATTTCTCCAGGAACACCCAGAGCAACCtTCCCACAAACTTCAAAGAAAATGCTGTCTCGGGGAAGCCCAAGCCACATCACTACCCCAAGGACTACAACCCCTCACCCGGTGGGAACTACAACCCCCAGCAGGTGCAAGGGCGTATCAGAGAGGTTCTGAACAAGTACAGTAATGGTTTCTGGGTGTCCAAGCTGCCTCAGCTCTACAGAGAACTGTACAAACAGGACCTGCCTAGTGAAGCAATCAAAGACTTGGAGCACTGGACACACATCTGCACCGTAGAGAAACCATGCAGCAGCAACCCCAATGAGTTACTCCTCTACCCGGCTAAGGAatcaacacaaacacagaccCCATCCCCTGTACCTACCAGAGTCCAATACCCCACCTCCACCGCCTTCACCCAATCCATGGACATCAAGCCCCAGTCAAAGCCCCCTACCACCCCCTCTACCACTACCATGAGCCCCCTCCCACTCACCCCCCCCTTGTCCTCCCCTCGTCCTCCAgcctccccctccaccctctctcccgacCTCAGACAAAAACTGGGAGAGCTTCTCGTCAAATACAGCAATGGTCTATGGGCCCACGGCTTACCCAAACTCTACTTGGACACGTACAAAACCAAACTCCCCGAGCACGTCCTGGAGAATCTCTCGCTGCTCTCCGACTTCTGCACCATCGAATACCCCATGCCGGACAACCCCAAACGGGCCATTCTATACAAGAGGACCAGGGAGGACAACCACAACAGGAGGGAGTCAGTGGAGGAGCGCAGGGccagagaggaggtggggaggaggctCAGTACCCAGACTGTacctcctcttctcatcccccGAGAGGAGTACCCCTCTGTGTTGGTGGGGGAGGCTGCTAATACCAACGGAGTCATACTCCGGTACATAGGAGAGGGTTACTCCCAGGCACAGGAGGCTCTGGAGGACAAGATGAGAGAATTCTactgttgccaggacaacaacacccGTACTCGTGACAAGAAAAGTGGTACACCCCTGGCCTCCCTAACCTCGGGTCAGCTGGCTGCCGTCAGGactgaggaggatgaggagatacTACGAGCACAAGTCACAGAGGTCATGGCCGACAAGGTCAAGGTTTACTATGTGGATCACGGGTTTTCAGAAGTCATCAGCAAGGCCAAAGTTTTTGAGCTGCATGAGAAGTTTTTCAACCTGCCTTTCCAGGCCACCAAGTGTCAATTGGCTGGTCTGGAGCCTTTCTGCCAGGAGCCTGCTGTCCTGAAGAAGTTTGAGTCCATGGCCAGCGGCAAGATACTATTGGCTGAGATCCTAGAGAGAGGGCAGACCCCATTGGTGGTCCTGTATGACACGTCACAGGATGATGATGTCAACATCAACGCTGCATGTATCAAAGCCCTGCAGGACAAGACTCTGGCCAGCCCCCTACAGgtgAACAGTGCCTATATGAACGTGGCTGTGAGAAGTGTGTGTTCAGACGGGACCTTCTACTGCCAGCTCCCGTCTCGAGGTCTGGCCAAACTCACTGAGATCCTGGAGAAGGCTGAGGCATACTTCCACTCACAGGGGACGTCAGAGTTCCTGGTGTCCAGACCGTTCTGTGGGAAAGGCTGTCTGGCGCGCTACAAAGGCAAATGGTCTCGCGTGGAGATCACTAACCTCCATGGTAGTCGTGTATTGGACATCCTCTTCATAGACCTGGGGGTGCAGGCCTCAGTGGAGGTGATTGAGCTGAGGGAAGTCCCACCTCCTTTCCTATGGGACCTGATTGCCATCCCACCACAGGCGGTGAAGTGTTGTCTGGCTGACCTGACTGTGAGTGGTGTGGGCTCCTGGACTCCAGACGCTGTTCAGTGGTTCCGAGACGCTGTGCTCAACTCCACAGACTGCAGTGTGAAGATCGACAAGCTGGATGAGACCAAGCGCAGTGTAGCCTATGTCTACCTGTTCCCGGACAAGAACTTCCAGGACCCCGCGAGGAGTCTCAACCGCCAAATGGCTGCTTCGGATCTCTTCAAACACAGAGGGGACCACTGCCCTTCCAAGACCTCCACTTGTACCTCCACTGCCACCCTCACCTCTACCCCCAagacctccacaaccaccaccacacccaGCTCCAACGGGACCAAGTCCCAGCTGAGACGTGCCCGCTTGGAACCAAGGCCAACAGGCGGTACAAGCACATCTCCGGGGACTCCCCCACCTCCCTCATCCACCACACCTATCAAGCTACCTCTGCTGCTGGAACTACCACCTGCAGGTCATAACATGGATATCTATGTGTCGGTGGCGTGTCATCCGGGCCACTTCGTAGTGCAACCTTGGAGAGATATGTACAAGCTGGTGGTTCTGATGGAAGAGATGATCCTGTACTATAATAAAACAGAGGAGAAGCCTCTCAAAGGGGAGAAGAACCAGATATATGCTGCCAAAGTAGAGAACAATTGGCACCGTGTGCTGGTGAAGGGGGTGTTGACCAACGGTCTGGTGTCGGTCTATGAACTGGACTATGGTAAACATGAGCTGGTCAGCGGCACACAGCTCCGCCCCCTCATACAGGAGTTCCGACTGCTACCATTCCAGGGCATCACCGCACAACTCGCAGGAGTGAAGCTGAGGCAGTGGTCAGAGGAGGCTTCCATCTTGTTTCGGAACCATGTGGAGAAGAAGCCGCTGGTGGCCCAGCTGGAGGCCGTACAGGATGCGCATCACCCCTGGGACAGGAAGTTGACCGTCTTCCTGGTTGACACCTCGCAGGAGGAGAAGGACGTCTGGGTTCACGACATCATGGCCGAGTTTGTTGACGAACTCACCAAAGAAGTGTAGTTAGATCAACCCTGTGCACAAAAGTGCATCTAGAGTGCTGGTTATGGCAGGAACAACTAGGTAGGTCTAttcaaaacaaatgtaaaaaaatatatataataaagtaTATAAACATTTGTTTTGGATATCTACGTGTAGTTGGATGCTGGACTTTTCTACGGATGTTGCTATGAGAAAGCAGAACTGTTGCCGTTACATTGGGAGACagttggaaggagaggagacttgGACATGTTGTGCTTGAGAGTGGGGGGAAACACACTCGCTCACAGTATAGAATGGCATTCTGATCAAAAGCTCAATAATATCACCATCGTGCCGACTTCCCTAAAAGCTTTGCCACACAGAGGGGTTGTCATAATCTGTTGAATGTCTAGCCTTTGATATGGGATGGGTTTCCTGACACCTTCGCTCATATTGTACTTTTGTTTTCTTGACTCAATAAATATGTATGTGATACATAAGCTGTATTAACAATCAAAGCACAATaagtatttacagtgcattcaaactattcagaccccttgactttttccacattttgttacattacaacctattctaaaatgtattaaatatatttttttttctcatcaattttcacaca

Function

NR:

description
tudor domain-containing protein 7B-like

GO: NA

KEGG:

id description
K18405 TDRD1_4_6_7; tudor domain-containing protein 1/4/6/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987361.1 True 4874 mRNA 0.51 19 12595885 12635228

Neighbor

gene id symbol gene type direction distance location
LOC110531482 LOC106577910 coding downstream 12384 12566380 ~ 12583501 (-)
LOC110531481 LOC106577909 coding downstream 33271 12552125 ~ 12562614 (-)
senp3b LOC106577906 coding downstream 88144 12484761 ~ 12507741 (-)
LOC118966199 NA coding downstream 120236 12475507 ~ 12475649 (-)
LOC118966200 NA coding downstream 122093 12473668 ~ 12473792 (-)
trnaa-ugc-29 NA coding upstream 18491 12653719 ~ 12653789 (-)
LOC110531492 LOC106577986 coding upstream 221338 12856566 ~ 12876446 (-)
ripk3 ripk4 coding upstream 330905 12966133 ~ 12983100 (-)
LOC110532921 LOC106577946 coding upstream 377484 13012712 ~ 13014459 (-)
LOC118966159 LOC106577936 coding upstream 484769 13119997 ~ 13139049 (-)
G772665 NA non-coding downstream 6120 12589407 ~ 12589765 (-)
G772661 NA non-coding downstream 10486 12584744 ~ 12585399 (-)
G772658 NA non-coding downstream 11221 12584412 ~ 12584664 (-)
G772653 NA non-coding downstream 47621 12547908 ~ 12548264 (-)
G772686 NA non-coding upstream 8739 12643967 ~ 12644277 (-)
G772707 NA non-coding upstream 39328 12674556 ~ 12675819 (-)
G772709 NA non-coding upstream 41949 12677177 ~ 12677484 (-)
G772710 NA non-coding upstream 46668 12681896 ~ 12682183 (-)
G772753 NA non-coding upstream 123262 12758490 ~ 12764721 (-)
G771614 NA other downstream 624531 11970904 ~ 11971354 (-)
G771540 LOC106577916 other downstream 707170 11870589 ~ 11916867 (-)
LOC110532912 LOC106577883 other downstream 807316 11759145 ~ 11788765 (-)
LOC110531452 LOC106577886 other downstream 894302 11698392 ~ 11701613 (-)
G771457 NA other downstream 966297 11628616 ~ 11629588 (-)
G772877 LOC106577934 other upstream 359041 12994269 ~ 12996410 (-)
G773163 NA other upstream 955025 13586326 ~ 13666937 (-)
G773168 NA other upstream 1061951 13697179 ~ 13699328 (-)
LOC110531538 NA other upstream 1345100 13977459 ~ 13987582 (-)
LOC118966145 LOC106599223 other upstream 1614173 14249401 ~ 14254157 (-)

Expression


Co-expression Network