XLOC_026603 (rogdi)


Basic Information

Item Value
gene id XLOC_026603
gene name rogdi
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 36427988 ~ 36440705 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051825
CAAACCGGAAGTTCTGAATAAGGAGGCGGTGCCGAGCGTAATTGTTTACGTGTGATCGCCCGACCATCCAGTCAGTCAGACTAAATAGCGCAGTGCCCTTGTAACATTTTACCTGCATAATTTGGCCAGCTTGACTGAATTGTGATGCTCGGAGCAGAGCGATCTACTCTGTCTGAAGTAGCCAAGATGACCGCGGCGAGTCAAGCAGAGCGGACCGTGCTGGAGGAAGAATTCAACTGGCTGCTGAAGGAAGAGGTGCATGCGGTGCTGAAACAGCTGCAGGACATTTTAAAGGAGGCATCAAGGCGTTTTTCCATGCCGTCACCGGGTCTGGAGGGACAGCTGAAGCAAGAAAACTTCATTCTAGGCAGCTCAACgATGGACCAGGTTAAAGGGGTTTTGACTCTACAAGGAGAAGCTCTTACTCAAGCTGATATTAATATCAAAGTTGCTAAAAGTAGTCAAGTCATGCATTTTGCATTCCGGGATGATAAACAGTGGAAATTACAGCAGATCCAGGATGCCCGAAATCATGTGAATCAGGCCTTGCAGTTGCTCAGCAGCCGTGACGACAGCTATCACTTCAAAACTGGGGCTGAAGTCAATAAGCTTATGGACGCAATAATGCTTCAGTTGACTCGAGCCCGTAACAGACTCACCACCCCGGCCAGCATGACTCTTCCTGAGCTTGCAGCAAGTGGCCTCATGAAAATGTTTACACCTCCAATGCCGGGTGACGTAATGGTGAACTTCTACATCAATCTCAGTAAACTGTGTTTGACGGTGTATCAACTACACGTGCTGCAGCCTAACACTACTAAGAACTTCAAACCGGCAGGAAGTTCAGTGCTGCATAATCCAGGAGCAATGTTTGAACACAACAACACCAAGTTCGAGGTGAGCCACGTGCACAAGGTGGAGTGTGTGGTGCCGTGGCTGAACGACACGCTGGTGTTTTTCACCATTTCTCTGCAGCTCTGCCAGCAGCTCAAAGATAAGATTTCTGTCTTCTCTAGTTTCTGGAACTACAGACCATTTTAAGCTACATCTGACCAAAACTCTACATTgaatgatcatttaaaaaagctaaataattaaattattatgctCTAGAATTTactaagaacaaaaaaaaactattgtgaaCAAGCTCCGTGAAGTAATCCGTTGTGATTTTTACTATATGACCATGTATGAATCTAGTGTGCTTCTCGTTCAGTATGAGGTAGCGAGTGCTGTCTATGTAGTCCGTATGGAATCATTTGAAACTCTTTTCGGATGAAGCCATTCGGCGATGTGGTTTTGTGTTCATGCAGTATTTGTCATGGTCAGTGTTGATTTTATTTGTCAGTAATCTTGCCTATATTGTGTTTACTCATCCATGTTTAGGTTTAGAAAGGAAACGCTACTAAAACACAATGCTTACCTATTTATATATTGTCACAACGGCTGTGAAATATTCCAGTTGGTTTGTCGAGGGAGCTCTTTGAACTGTTTACCAGTGTTTTTAGCTGAGAAAGTTTAACACTTGAACATTATTCCTCTAAAACCAGGGACTGTCATCAGTGCAGCACGGTAAAAGCATTAAGACCATTTTTCATATGCGCATTAATAACCAACAGTGTATTTTTTTGCCACTGCAACTCATCTGTGGTATCATTTTAGTAACTCTAAATGACAATGAATGATGTCAGGGCTTCATCGTCCATCATTCCATTTCAAAGCAAACACATTCCTACTGATGGCTGATTGGAGATCAGAGTTCAGCATTTCTAATAGCCATCATTCTATGATTAAAAAAAGGAATATCATGTTGATCAACAGTTTGTGGTCATTTACAGAAAGGGTTTCTCTGGTAGCTCATTTACTTTGTCAGACTTGATATATTTattgctatatttttatttatttcttgttaAATGCACTTAATTCGTGTCCTGATTTCATGCGTGTTCATTTTGAACATTTGATTTGTGTTTACATAAATTCTAAGCTATTTTCATGTGTATATCATGCTTGATATGGAATATTTTGTGCAATAAACATACTTTATGAACACTA
>TCONS_00051826
GTTAGAGCATTTAAATCTGGACTCTCTTGATTTACTGTGcaatatttgtaaaattattagttaattattttaGGTAATATTGGTGGTGTTATTTTTTTTCGCTGTAACAGTTTTATAGGAACGAATAAAGTACTgacaaaaaatgtataacttGTTATAAGAAATGctttcacttatttttttatttggttaggATGGACCAGGTTAAAGGGGTTTTGACTCTACAAGGAGAAGCTCTTACTCAAGCTGATATTAATATCAAAGTTGCTAAAAGTAGTCAAGTCATGCATTTTGCATTCCGGGATGATAAACAGTGGAAATTACAGCAGATCCAGGATGCCCGAAATCATGTGAATCAGGCCTTGCAGTTGCTCAGCAGCCGTGACGACAGCTATCACTTCAAAACTGGGGCTGAAGTCAATAAGCTTATGGACGCAATAATGCTTCAGTTGACTCGAGCCCGTAACAGACTCACCACCCCGGCCAGCATGACTCTTCCTGAGCTTGCAGCAAGTGGCCTCATGAAAATGTTTACACCTCCAATGCCGGGTGACGTAATGGTGAACTTCTACATCAATCTCAGTAAACTGTGTTTGACGGTGTATCAACTACACGTGCTGCAGCCTAACACTACTAAGAACTTCAAACCGGCAGGAAGTTCAGTGCTGCATAATCCAGGAGCAATGTTTGAACACAACAACACCAAGTTCGAGGTGAGCCACGTGCACAAGGTGGAGTGTGTGGTGCCGTGGCTGAACGACACGCTGGTGTTTTTCACCATTTCTCTGCAGCTCTGCCAGCAGCTCAAAGATAAGATTTCTGTCTTCTCTAGTTTCTGGAACTACAGACCATTTTAAGCTACATCTGACCAAAACTCTACATTgaatgatcatttaaaaaagctaaata
>TCONS_00051827
atttttttatttggttaggATGGACCAGGTTAAAGGGGTTTTGACTCTACAAGGAGAAGCTCTTACTCAAGCTGATATTAATATCAAAGTTGCTAAAAGTAGTCAAGTCATGCATTTTGCATTCCGGGATGATAAACAGTGGAAATTACAGCAGATCCAGGATGCCCGAAATCATGTGAATCAGGCCTTGCAGTTGCTCAGCAGCCGTGACGACAGCTATCACTTCAAAACTGGGGCTGAAGTCAATAAGCTTATGGACGCAATAATGCTTCAGTTGACTCGAGCCCGTAACAGACTCACCACCCCGGCCAGCATGACTCTTCCTGAGCTTGCAGCAAGTGGCCTCATGAAAATGTTTACACCTCCAATGCCGGGTGACGTAATGGTGAACTTCTACATCAATCTCAGTAAACTGTGTTTGACGGTGTATCAACTACACGTGCTGCAGCCTAACACTACTAAGGTATCAAGCTATCTTAAAAAGAAAACCTCTAGTTTGCTCGCCATAATTGTGTGTTGAAATGCACTGTCATTTTGGTTTTCTGTTAGAACTTCAAACCGGCAGGAAGTTCAGTGCTGCATAATCCAGGAGCAATGTTGTAAGTGCTCATTGCGTTTCCTGTTTTGATGCTTCAATGTCCTTCTTCTGCTTTTCCTGTTTTGAAGCCGTCTGTTTGATGGAGCTTTCTTTTCTCCTCAAGTGAACACAACAACACCAAGTTCGAGGTGAGCCACGTGCACAAGGTGGAGTGTGTGGTGCCGTGGCTGAACGACACGCTGGTGTTTTTCACCATTTCTCTGCAGCTCTGCCAGCAGC
>TCONS_00051828
TAAGGAGGCGGTGCCGAGCGTAATTGTTTACGTGTGATCGCCCGACCATCCAGTCAGTCAGACTAAATAGCGCAGTGCCCTTGTAACATTTTACCTGCATAATTTGGCCAGCTTGACTGAATTGTGATGCTCGGAGCAGAGCGATCTACTCTGTCTGAAGTAGCCAAGATGACCGCGGCGAGTCAAGCAGAGCGGACCGTGCTGGAGGAAGAATTCAACTGGCTGCTGAAGGAAGAGGTGCATGCGGTGCTGAAACAGCTGCAGGACATTTTAAAGGAGGCATCAAGGCGTTTTTCCATGCCGTCACCGGGTCTGGAGGGACAGCTGAAGCAAGAAAACTTCATTCTAGGCAGCTCAACGTAATATATATGCATTCAGCCACTCTACTTggacctttttttgtttttttgcatgcataagaaaaataaaaatgttgttgtaAATCTTTTGGAAATCAAA

Function

symbol description
rogdi Predicted to be located in several cellular components, including nuclear envelope; perikaryon; and synaptic vesicle. Predicted to be part of RAVE complex. Is expressed in nervous system. Human ortholog(s) of this gene implicated in Kohlschutter-Tonz syndrome. Orthologous to human ROGDI (rogdi atypical leucine zipper).

GO:

id name namespace
GO:0007035 vacuolar acidification biological_process
GO:0032502 developmental process biological_process
GO:0043291 RAVE complex cellular_component
GO:0042995 cell projection cellular_component
GO:0030424 axon cellular_component
GO:0030425 dendrite cellular_component
GO:0045202 synapse cellular_component
GO:0005634 nucleus cellular_component
GO:0005635 nuclear envelope cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0043204 perikaryon cellular_component
GO:0030054 cell junction cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7582 Predicted to be located in several cellular components, including nuclear envelope; perikaryon; and synaptic vesicle. Predicted to be part of RAVE complex. Is expressed in nervous system. Human ortholog(s) of this gene implicated in Kohlschutter-Tonz syndrome. Orthologous to human ROGDI (rogdi atypical leucine zipper).

Ensembl:

ensembl_id ENSDARG00000104413

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051825 False 2061 mRNA 0.41 11 36427988 36440705
TCONS_00051826 False 909 lncRNA 0.41 8 36428956 36438526
TCONS_00051827 False 817 lncRNA 0.45 5 36430945 36438351
TCONS_00051828 True 459 lncRNA 0.46 3 36439500 36440687

Neighbor

gene id symbol gene type direction distance location
XLOC_026602 cog1 coding downstream 7591 36401105 ~ 36420397 (-)
XLOC_026601 gna13b coding downstream 63085 36332579 ~ 36364903 (-)
XLOC_026600 NA coding downstream 104363 36320239 ~ 36323625 (-)
XLOC_026599 prkar1aa coding downstream 155318 36262593 ~ 36272670 (-)
XLOC_026598 rac3a coding downstream 167886 36248851 ~ 36260102 (-)
XLOC_026604 glyr1 coding upstream 601 36441306 ~ 36458165 (-)
XLOC_026605 ppl coding upstream 19085 36459790 ~ 36481986 (-)
XLOC_026606 NA coding upstream 142395 36583100 ~ 36587136 (-)
XLOC_026607 rrn3 coding upstream 148722 36589427 ~ 36602500 (-)
XLOC_026608 si:dkeyp-72e1.6 coding upstream 164444 36605149 ~ 36606884 (-)
XLOC_026588 NA non-coding downstream 853537 35565128 ~ 35574451 (-)
XLOC_026585 NA non-coding downstream 1479927 34947402 ~ 34948061 (-)
XLOC_026580 NA non-coding downstream 1786015 34641048 ~ 34641973 (-)
XLOC_026572 NA non-coding downstream 2286807 34139637 ~ 34141181 (-)
XLOC_026612 FO744883.1 non-coding upstream 315328 36756033 ~ 36756149 (-)
XLOC_026617 NA non-coding upstream 512920 36953625 ~ 36954088 (-)
XLOC_026618 CT573704.1 non-coding upstream 527166 36967871 ~ 36967993 (-)
XLOC_026619 NA non-coding upstream 528698 36969403 ~ 36972222 (-)

Expression


Co-expression Network