ripk3 (ripk4)


Basic Information

Item Value
gene id ripk3
gene name ripk4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 12966133 ~ 12983100 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614711.2
TCTTGATGGGAAGTGAAAGAAGTTTATGAGAAGTACACCGCCATTAGAAAAGATATCTCGCAGAAAATTAACTGACATATTTTTAACACAACGGGTTTGATCATTTTCGCTGCTATTTCATTGCAAAATAGTGTTTTAATAACACCTGTTGTTATAAAGAGCATGAAAACCACAAAGTATTTCTCCTTGGCCTCCTGGTGAAAGATGGAACTGTCCAGTTGTCCGGCTCCATTGCTGATTGGTGATGACAGCCTGCAGAAATGGTGTGTGATTGGCTCAGGAGGGTTTGGACAGATCCACAAGGCCAGACATGTAGAGTGGGGGTTGGACGTGGCCATCAAGTTGTTGCATTATGATGACGGctCCAGCTCATCTCTGCTCAGAGAGGCAGACCTCATGCGCCAGGGGGGGAGCTCATATGTCCTCAGGATCCTAGGGGTGTACCAGGGACGGCCCCCAAGCTCCGGCCCCTCCACCCACCTAGGGCTGGTCATGGAGTTTATGGAGAGGGGGTCCCTGGCGACCCTCCAGGAACGTCTCTCCGGTCCCCCACCCTGGCCCCTGTCCTTCCGCCTGGCCCACCAGGTGGCTCTGGGCATGAACTTTCTCCACCACCTCGATCCGCCCCTGCTGCACCTGGATCTCAAGCCCAGTAACGTGCTGCTGGATGACAGCCTCCATGCCAAGCTGACAGATTTCGGCCTAGCCAGGGTTTACCACAGCATTTCTAAAGCGAACAGGAAGGACACTGGAGAGGATGGCGGTACATTAAGTTACATGCCACCAGAGGCTTTTGACATGACATACAAGCCCACCCACGCCTCGGATATCTACAGCTATGGCATACTACTGTGGTCCATTATCACGGGAAAAGAGCCATATCCTAaCGCCCGGTCCAGTTTGGTGCGGTTCCGGATCCCCCAGGGGGATAGACCCTCTCTGGATGCATTGGACAGGGACCAGGTCGAAGGGCTGGGGGAACTGGTGGACCTCATGGAGAGATGCTGGAATACAAAGCCCACCCTGAGACCCACATTCCTGGACTGCCTTGCTGTGACAGAGAAGATGTACGAGAAACACAAACAAGGGATAAATGATGCCGTCCATCAAGTGCAGAAAAAACTGgactcaGAGAGTGAGCAGAGTATTACATCCTCTGTTGCTGCCCTTCATATCTCACAGCCATCAGGAATTCAAAAACACAAAGTTAAAATCTCTGATCGTGTGAAGAGTGAACCTCCCCCAACACAGGAAACGGCTGGGAGATTGACCTCGAAACAGAAATATAAAGAGTATCCATCCCTTCAGCACACAGCCCAGCCAATGAGATGGCCAGATGCAGATCAGGTCACTTCTTCAACCAATCACAAACCAAAGATGTTTCCCCCTGTATTCAATCATGACTGCAAAACAACAGCTTCCCGCTCTGCATCTAATCAAAGTTCAGCGGTCAATTTTCAGCGCCTGTGTTCCACTCCAGTTACCACATCCAGTTATCCCACAGGGGGATTCTCCATCAACATGAGCAATGTGGAAGGACTGCAGTTTGGTGACAATAACAACATGTTCATCAGGTCGCCACATCTCAGTAAACGCCACAGAAACCCCACAGCCCCATCTAGAGTTAACTTCACACCAGTGAAGCCAAGGAACCCTAAAGCTCCAGAACCATGGTGAAGTCGCCAACACTCCCAGCCCTTTGCCCGTGTACGAATCCCTGCAAGAGACCGAGGTTCACTCTTTGTCTCTCATCTTAACCTGTCAGCCCCTCTGTTTATAGTCTGTCTCTAATAAAAACACAAAATATTGAGATTCATtctccttaaaaaaaaaagaaaccatAAATGATAATTATCTTTTTTTATTACTTTTTTGTAACATTTTGAATGATGAAATCCTGTGCAGCTAGAAAGCATGGATTGATCCATTTTTGTCCTTTTTATTCTGTTAAATTTGCCCACGAGGGACTGGTCTGCACTGACATCCTAAAGAGACTATCTTTAATATCTTTGCATTAAAAAAAGTTCTCAATTTGTTGAGCTTCAGGAAAGTCAATAAAAAGCTCAGATTTACAGAATGACCATCAGTGTTTTCATCTGTCTTACCACTAGAACAAGTCTATTTTTCCCTTTTATAATCTTTATTGTGTTTTTGTAACCCTTATCCACAGACAATAGAATTTATGAATAGATTAGCATTCCAATTACATTGATATGAAGTATGTATGGTTcatacagctgaagtcagaagtttacatacattttggttgttgtcattaaaacttgtttt

Function

symbol description
ripk4 Predicted to enable ATP binding activity and protein kinase activity. Predicted to act upstream of or within protein phosphorylation. Is expressed in several structures, including EVL; digestive system; ectoderm; epidermis; and peripheral olfactory organ. Orthologous to human RIPK4 (receptor interacting serine/threonine kinase 4).

NR:

description
receptor-interacting serine/threonine-protein kinase 4-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08847 RIPK3; receptor-interacting serine/threonine-protein kinase 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614711.2 True 2289 mRNA 0.46 14 12966133 12983100

Neighbor

gene id symbol gene type direction distance location
LOC110531492 LOC106577986 coding downstream 89687 12856566 ~ 12876446 (-)
trnaa-ugc-29 NA coding downstream 312344 12653719 ~ 12653789 (-)
LOC110531484 LOC106577912 coding downstream 330905 12595885 ~ 12635228 (-)
LOC110531482 LOC106577910 coding downstream 382632 12566380 ~ 12583501 (-)
LOC110531481 LOC106577909 coding downstream 403519 12552125 ~ 12562614 (-)
LOC110532921 LOC106577946 coding upstream 29612 13012712 ~ 13014459 (-)
LOC118966159 LOC106577936 coding upstream 136897 13119997 ~ 13139049 (-)
LOC110531504 tri39 coding upstream 228415 13211515 ~ 13217001 (-)
LOC110531502 LOC106577948 coding upstream 367020 13350120 ~ 13367176 (-)
sb:cb1081 LOC106577950 coding upstream 459354 13442454 ~ 13483203 (-)
G772857 NA non-coding downstream 24126 12939794 ~ 12942007 (-)
G772803 NA non-coding downstream 120379 12845531 ~ 12845754 (-)
G772802 NA non-coding downstream 120739 12845096 ~ 12845394 (-)
G772798 NA non-coding downstream 125248 12840210 ~ 12840885 (-)
G772797 NA non-coding downstream 127478 12837266 ~ 12838655 (-)
G772914 NA non-coding upstream 96672 13079772 ~ 13084925 (-)
G772924 NA non-coding upstream 118929 13102029 ~ 13102298 (-)
G772934 NA non-coding upstream 128802 13111902 ~ 13112213 (-)
G772946 LOC106577942 non-coding upstream 214404 13197504 ~ 13199073 (-)
G771614 NA other downstream 994779 11970904 ~ 11971354 (-)
G771540 LOC106577916 other downstream 1077418 11870589 ~ 11916867 (-)
LOC110532912 LOC106577883 other downstream 1177564 11759145 ~ 11788765 (-)
LOC110531452 LOC106577886 other downstream 1264550 11698392 ~ 11701613 (-)
G771457 NA other downstream 1336545 11628616 ~ 11629588 (-)
G772877 LOC106577934 other upstream 11169 12994269 ~ 12996410 (-)
G773163 NA other upstream 607153 13586326 ~ 13666937 (-)
G773168 NA other upstream 714079 13697179 ~ 13699328 (-)
LOC110531538 NA other upstream 997228 13977459 ~ 13987582 (-)
LOC118966145 LOC106599223 other upstream 1266301 14249401 ~ 14254157 (-)

Expression


Co-expression Network