XLOC_026604 (glyr1)


Basic Information

Item Value
gene id XLOC_026604
gene name glyr1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 36441306 ~ 36458165 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051829
AGTGCGACGTTTCTCACTAACAGTTTAAGATGGCGACCGTGCATCTCAGGATCGGGGATCTGGTTTGGGGTAAGCTTGGACGCTATCCACCTTGGCCAGGAAAGGTCGTCAGTCCTCCGAAGGATCTGAAGAAGCCGAGAGGCAAAAAATGTTTCTTCGTCAAGTTTTTTGGAACTGAAGATCATGCCTGGATAAAGGTAGAGCAGCTGAAGCCTTACCACCCCCACAAAGAGGAGATGATCAAGATAAACAAAGGCAAGCGCTTCCAACAGGCTGTTGATGCGGTTGAGGAGTATCTAAAGAAGGCCAAGGGGAAAGATCAGtcaCACTCTGATGACAAAAGCAAGTCTGATAAAGGTCGGAAAGCAGCTAAACCAATGAAGATCAttgaagaggatgatgaagatgccTTTAAGGGTGGCTCATCAGATAAGCCAGCTTCATCAATGGAGCCCATCACCAAACGCTTAAAGATAATCGAGGAGGACACCAGATCAACATCTATTCAGGCAGCAGACAGCACAGCCATCAACGGCAGCATCACACCCACTGACAAAAGgaTAGGTTTCCTTGGACTAGGACTGATGGGGAGTGGCGTGGTTTCTAATTTGTTGAAGATGGGGCATGTTGTCACTGTTTGGAATCGCACAGCAGAAAAGTGTGATTTGTTCATTCAAGAAGGTGCTAGATTAGGACGAACGCCTGCTGAAGTCGTGTCCATGTGCGACATCACATTTTCTTGTGTATCAGACCCAAAAGCTGCCAGAGATCTTGTGTTAGGTCCAAGTGGAGTTTTGCAGGGAATCAGACCAGGCAAATGTTACGTGGAGATGTCCACCGTTGATCCAGAAACCATCACAGAGCTCTCACAGGTCATCACATCCAGAGGGGGAAGATTCCTAGAAGCTCCTGTTTCAGGCAGCCAGCAGCTTTCCAATGATGGCATGCTGGTAATTGTTGCCGCTGGAGATCGCAGTGTTTATGAAGACTGTAGCAGCTGCTTCCAGGCAATGGGAAAGACCTCTTTCTTTATAGCAGGGGAAGCAGGAAATGCTGCAAGAATGATGCTCATACTTAACATGGTTCAAGGCAGTTTTATGGCGACCATCGCTGAGGGATTGACCTTGGCGCAGGCCACGGGACAGTCACAACAAACATTCTTGGATATCCTTTGCCAAGGACAAATGGCAAGCACATTCGTGGACCAGAAATGCCAGAatatTTTGCAGGGCAACTTCAAACCTGATTACTACCTAAAGCATATTCAGAAAGATCTGAGATTAGCCATTTCAATGGGAGATTCTGTTAACCATCCAACACCAATGGCAGCTGCTGCAAACGAGGTATACAAGAGAGCAAAAGCATTGGACCAGTCGGACAATGACATGTCTGCAGTCTACAGAGCTTACATCCACTAATCCCGTAGATGTGCTCCACATCCCGGACCACAAACCTCACCGTCTTTGTTCCTGTCCCTCTTGTCTTTTTCTCTCCTCTGCTGATGAATTTTGTTGGGCACCAGTGATCCGTTTTTTTCCCATGTATAATGGGATCTCTTTAGCAGCCTAATCTGAGCATTGCACTGACTGTAATATTGCTGCACGCCTGCTCAACGGGAGGGTATTAAACTCCCCAGCGAATGATTCTTTTGTGATAGAGCGTGCAGTGTATTATATTCACATTTTGTTAAGGCTACTGCATACGATGCAGTGTTGTTTGAAGAGGCCAGGGTTTTATTTATAGCTCATATCTTTACAAGTGAATTCCCTCATTGTCAtttttgatgctttttttttttttctcagtctgTAAAGTTATGAACTTTTGATCGCTAACCGGCTTGAGGAACACGATGAAAGAAGCCACTGCATTGCCTTAATACCCGTATAAGatagatgtatttatttattttatcttgaaaGATCACCATCATGCAAGGGGCAATTTGGCCGTATGTTTTATTTTCCAGTTGttcattaatgtttattttttgaatgCCTTATCAGAAATGCATTGTTCTTTTAAGTTGACTGTGTATGAATCACACAGAAGATCCTGAAAGGATTTGTCACTCACAGTGGATTTATTGAATCTTGACTGTCACTTCAGTAATAGGATTTCCGTTTTCCAGCTTGACTACTTTAGAGTCAGATTTTCATCGCTGCATTTAAATCCGTCAAAGTGGgctgtaaaaaaaagaaacttgtatgaagtcattttattttgctttatttgaagACTTTTAAATTGGACTTGTAATGTTTTGTGCGAGTCAGCTGGCAGTGTGAtctctttattttgtttaaagactAATAGACctgtacttttttgttttaattaccaTTATgactcaaagtaaaaaaaaaatcaagttggAAGCTAAAGTGTTTTTCCATTTTATCCTTAAATTATGATCAAGTTTGTTCATTTTAAGTGTACACCATCATGGTGTATAATTGGTCATTTCGGTATTTTtatcttaaaacaaaaacagggtgATTCTTTTCTACAAATTgttctgccaaaaaaaaaaaaaacagttgaggaCTTTGAAGTGCTTGATCTTGGACAAGATAAATTTGTGATTACTAAGGACTGTAAGATTCAGAtgttttgcgtgtgtgtgtgtatatatcccAATCAAAGGGTTTGGTTCTTTCAATACatggaaaaataacattttcatttggaCTCTACTGACGTGATTAATCATCTGGTGTCTTAATAATGTAGGCTGTTCTTTTGTCTTAGCTGATgggtttatttactgtaaatggtttttgttatgtttattctTTTGTGGCTTAAATAGAGTTGGTTATGAGATATTGACGACTTGATTCCAGTTGTGCAAGGAAGGTATTGGTGTTTTAATTGgagatatttataatttcatgtaaatgtgaaatttcattcttatttttttcttgtctgtttctttttttttttttttttgtgcggtCAACTGAACCCTCTGAATAAACACACCGAATGTCCAGCTTGTTCATTTTTACATCTCctgtatattgttgttgttttatgagttcattatgtttaaattaaagacaaaatgtacagtttttctgtccacatcaaa
>TCONS_00051830
AGTGCGACGTTTCTCACTAACAGTTTAAGATGGCGACCGTGCATCTCAGGATCGGGGATCTGGTTTGGGGTAAGCTTGGACGCTATCCACCTTGGCCAGGAAAGGTCGTCAGTCCTCCGAAGGATCTGAAGAAGCCGAGAGGCAAAAAATGTTTCTTCGTCAAGTTTTTTGGAACTGAAGATCATGCCTGGATAAAGGTAGAGCAGCTGAAGCCTTACCACCCCCACAAAGAGGAGATGATCAAGATAAACAAAGGCAAGCGCTTCCAACAGGCTGTTGATGCGGTTGAGGAGTATCTAAAGAAGGCCAAGGGGAAAGATCAGtcaCACTCTGATGACAAAAGCAAGTCTGATAAAGGTCGGAAAGCAGCTAAACCAATGAAGATCAttgaagaggatgatgaagatgccTTTAAGGGTGGCTCATCAGATAAGGAACAGACTGATTCTGACCCAGAGCCATCCTCTGTTCAACGGCTGGTCGCTGGAACAGTGTCAGGATTCAAATGGGATAGCAGTCCAGTAAAGGATGACCCACATTTTCATCACTTTCTGCTCAGCCAGTCTGAGAAGCCAGCTTCATCAATGGAGCCCATCACCAAACGCTTAAAGATAATCGAGGAGGACACCAGATCAACATCTATTCAGGCAGCAGACAGCACAGCCATCAACGGCAGCATCACACCCACTGACAAAAGgaTAGGTTTCCTTGGACTAGGACTGATGGGGAGTGGCGTGGTTTCTAATTTGTTGAAGATGGGGCATGTTGTCACTGTTTGGAATCGCACAGCAGAAAAGTGTGATTTGTTCATTCAAGAAGGTGCTAGATTAGGACGAACGCCTGCTGAAGTCGTGTCCATGTGCGACATCACATTTTCTTGTGTATCAGACCCAAAAGCTGCCAGAGATCTTGTGTTAGGTCCAAGTGGAGTTTTGCAGGGAATCAGACCAGGCAAATGTTACGTGGAGATGTCCACCGTTGATCCAGAAACCATCACAGAGCTCTCACAGGTCATCACATCCAGAGGGGGAAGATTCCTAGAAGCTCCTGTTTCAGGCAGCCAGCAGCTTTCCAATGATG
>TCONS_00051831
GTTTAAGATGGCGACCGTGCATCTCAGGATCGGGGATCTGGTTTGGGGTAAGCTTGGACGCTATCCACCTTGGCCAGGAAAGGTCGTCAGTCCTCCGAAGGATCTGAAGAAGCCGAGAGGCAAAAAATGTTTCTTCGTCAAGTTTTTTGGAACTGAAGATCATGCCTGGATAAAGGTAGAGCAGCTGAAGCCTTACCACCCCCACAAAGAGGAGATGATCAAGATAAACAAAGGCAAGCGCTTCCAACAGGCTGTTGATGCGGTTGAGGAGTATCTAAAGAAGGCCAAGGGGAAAGATCAGtcaCACTCTGATGACAAAAGCAAGTCTGATAAAGGTCGGAAAGCAGCTAAACCAATGAAGATCAttgaagaggatgatgaagatgccTTTAAGGGTGGCTCATCAGATAAGGAACAGACTGATTCTGACCCAGAGCCATCCTCTGTTCAACGGCTGGTCGCTGGAACAGTGTCAGGATTCAAATGGGATAGCAGTCCAGCTTCATCAATGGAGCCCATCACCAAACGCTTAAAGATAATCGAGGAGGACACCAGATCAACATCTATTCAGGCAGCAGACAGCACAGCCATCAACGGCAGCATCACACCCACTGACAAAAGgaTAGGTTTCCTTGGACTAGGACTGATGGGGAGTGGCGTGGTTTCTAATTTGTTGAAGATGGGGCATGTTGTCACTGTTTGGAATCGCACAGCAGAAAAGTGTGATTTGTTCATTCAAGAAGGTGCTAGATTAGGACGAACGCCTGCTGAAGTCGTGTCCATGTGCGACATCACATTTTCTTGTGTATCAGACCCAAAAGCTGCCAGAG
>TCONS_00051832
GAAGGATCTGAAGAAGCCGAGAGGCAAAAAATGTTTCTTCGTCAAGTTTTTTGGAACTGAAGATCATGCCTGGATAAAGGTAGAGCAGCTGAAGCCTTACCACCCCCACAAAGAGGAGATGATCAAGATAAACAAAGGCAAGCGCTTCCAACAGGCTGTTGATGCGGTTGAGGAGTATCTAAAGAAGGCCAAGGGGAAAGATCAGtcaCACTCTGATGACAAAAGCAAGTCTGATAAAGGTCGGAAAGCAGCTAAACCAATGAAGATCAttgaagaggatgatgaagatgccTTTAAGGGTGGCTCATCAGATAAGTCCTATGAAAAGACCATTTGATGTTGCACCTGCTTTGGAGTCAGGTTACAGTTTTTCAAGCGGGACCCACCCCACAGTGTGACCAGCGTATCCGTCTGTCAGAATTTTGCCTGGGTTGCAATGCTGCTTTTTAAGGCTTTGTTTAATGAGATAAAGCCATTCTGTACACATGGTGAATGTGTCTCTTTTTCACTTAAGGAACAGACTGATTCTGACCCAGAGCCATCCTCTGTTCAACGGCTGGTCGCTGGAACAGTGTCAGGATTCAAATGGGATAGCAGTCCAGTAAAGGATGACCCACATTTTCATCACTTTCTGCTCAGCCAGTC

Function

symbol description
glyr1 Predicted to enable methylated histone binding activity. Predicted to be located in nucleus. Orthologous to human GLYR1 (glyoxylate reductase 1 homolog).

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005634 nucleus cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0050661 NADP binding molecular_function
GO:0035064 methylated histone binding molecular_function
GO:0051287 NAD binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041121-5 Predicted to enable methylated histone binding activity. Predicted to be located in nucleus. Orthologous to human GLYR1 (glyoxylate reductase 1 homolog).

Ensembl:

ensembl_id ENSDARG00000099213

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051829 False 3097 mRNA 0.40 14 36441306 36458165
TCONS_00051830 False 1080 mRNA 0.48 13 36446582 36458165
TCONS_00051831 False 830 mRNA 0.48 10 36447529 36458143
TCONS_00051832 True 645 lncRNA 0.45 5 36451635 36457308

Neighbor

gene id symbol gene type direction distance location
XLOC_026603 rogdi coding downstream 601 36427988 ~ 36440705 (-)
XLOC_026602 cog1 coding downstream 20909 36401105 ~ 36420397 (-)
XLOC_026601 gna13b coding downstream 76403 36332579 ~ 36364903 (-)
XLOC_026600 NA coding downstream 117681 36320239 ~ 36323625 (-)
XLOC_026599 prkar1aa coding downstream 168636 36262593 ~ 36272670 (-)
XLOC_026605 ppl coding upstream 1625 36459790 ~ 36481986 (-)
XLOC_026606 NA coding upstream 124935 36583100 ~ 36587136 (-)
XLOC_026607 rrn3 coding upstream 131262 36589427 ~ 36602500 (-)
XLOC_026608 si:dkeyp-72e1.6 coding upstream 146984 36605149 ~ 36606884 (-)
XLOC_026609 si:dkeyp-72e1.7 coding upstream 151920 36610085 ~ 36612877 (-)
XLOC_026588 NA non-coding downstream 866855 35565128 ~ 35574451 (-)
XLOC_026585 NA non-coding downstream 1493245 34947402 ~ 34948061 (-)
XLOC_026580 NA non-coding downstream 1799333 34641048 ~ 34641973 (-)
XLOC_026572 NA non-coding downstream 2300125 34139637 ~ 34141181 (-)
XLOC_026612 FO744883.1 non-coding upstream 297868 36756033 ~ 36756149 (-)
XLOC_026617 NA non-coding upstream 495460 36953625 ~ 36954088 (-)
XLOC_026618 CT573704.1 non-coding upstream 509706 36967871 ~ 36967993 (-)
XLOC_026619 NA non-coding upstream 511238 36969403 ~ 36972222 (-)

Expression


Co-expression Network