LOC110531520 (LOC106577955)


Basic Information

Item Value
gene id LOC110531520
gene name LOC106577955
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 13602391 ~ 13611243 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614730.2
GGTTgtcagggagaacactgtaagaatggcccatgttctcaATTCTGTCGCAGTACATtttaaaagtgctgaacaaatagttatattgactacgtcagTCCTAGCtctctcattaatgtcttaatcaatgttatggattgcctcttatccgctcattgtccccttatgccatagtttgtacatctcaattgcaAGAAGACACCACATCTGtttagcaagtcagccatatcagctatgcttttttaaaaggcagtaaatgaggctgaatgaactgtttcgctgccagacaaggctctgctgatagccaggtgtagcagtggtaaggtgttgggactgctgttggaactctgctgttgggacagctttatgtaggccctaccAGTTTGTGAGCACGGTTTGTCACCGTTATATTGCAATTAATGTTTtgtttattgttgtgttgtgttgtgtagtggcttttctGGCATGCATAAATCAAAAGTAAAAAAATGTCACACCATTATTTACACGCTAAAATTGCCACTGATTATGTCAGTCTCATTTGCAATTCACTGTCATAGCCCCACATTAAAAATATGTGAGGGTGAGTTGAGAAAATCAGAAATCAGAAATACTTttagaatgtttttcaattgactgccaCAGCACCAAATAAAATGCACCAAATGGCAtttagaaaaacaaacatttttggtGTTCATTTTAATTGTTTTAAGGCGATAATTTTCAAATATCAAAATGGTGTCGTGGGACAAAAAAGTTTGCGGATCACTGGCATAGAGTATATATTTGGCTTGCAGTAACTAAACTGGCCATGGAGAGGGGCAGCTTTCCTATAAAGTAGTGTAATGAGGAAGCCAATAAGATACAGATGTCTTGATAAAACCTGGACCCTCCCTGTTTCCCTACGTGATTCTTGCTGGAAGGTTCAACTGACTGGTTACACATTAACCAGAGGAGCTAGAGCATGCTGTCTCATTATCAAATATTTCTGTTTCATAATTATGGCTACTCAATAGCCTTTAGCATTAGCAATTTGGTAAATGGGAAGTTGGAATGAATAATATTTGAGACTATAGGTGGTACATATACAACAAAACAGGCCATTCATATATACACAAGGTGCCGTGGCTGAGTATTGGAGAAGGACAAGACACAGCGTTGTTCTGGGACTATTTGACTGTTAGCTATTACCATCACCATGGGTAAAGCTGTCTCAGATATAGGATGTTTTGGCTCAAAACCAGAAGAACAGAAGAGCACAGTGGATTCAACAAAGAAGGGTTATGACTCAACTGCAGAGCAAGAAAACCCTTTACAGACAGATACTCATGTCAAACTATCTCCTAAGAAAGATGCATCAGCAAGATCCATCAAGAAGACTGCAAAGTTCGATATAAATCAAGCACGCTCACATGAAGTGGATGTTACTCTGGATGTGGACACTGCTCACCCTAAGCTGAAGATACATGGGAACTCACTACAGTGGACTAATGAATCACCACAGAGAAAAATTAAAGTTGAAAACTGTTTTGATGAAGAGCCTTTTGTGTTGGGCAAAATGGGCAGTCCTTTGAAGACTTACTGGGAGGTGAATGTGAAGGAGAAGGATGACTGGCTGCTTGGCGTTGCCAAGGAAACGGCTAACAGGAAGGGGCCGTTGGCTTTCAGTCCAACTAATGGCTTCTGGGTAATCAGACTATCCAATGGGCAAAGACTTAAAGCCATGGAGGATGAAGAACATGTTCTTGACAAAGGTATTCCAGATAAAGTCGGTATCTATCTGGATTATCAGGAAAGGAAGGTGACTTTCTTTAATGCAGAAGAAGGTTCGCTCATCTACTCATTTATTAATGGACCAAGTTATCAGGATGATGTCCTCCCACTTTTCTCACCCTGGAACAACGATGCAGATCCAATCACAATTTTGCCCATTACAGCAACATAAAAAAACATCATTCATCACATACCCTGTATGTCAATAGCTTATTGTGGTATAAAGCTATGTGAATCATTTTCGATTAAGTGATGTACAGAATTGTGGATTAATTCTCATCCTTTGCTGTCATCGAACCAGGCATCAATGTTGTGTTCCCTATTCTTTATTAATATATTAGACATTCATTATTTCAGTAGAGTATTGTGTGTGAGATTAAACATGCATTTTTGTTTTAA
>XM_021614731.2
GGTTgtcagggagaacactgtaagaatggcccatgttctcaATTCTGTCGCAGTACATtttaaaagtgctgaacaaatagttatattgactacgtcagTCCTAGCtctctcattaatgtcttaatcaatgttatggattgcctcttatccgctcattgtccccttatgccatagtttgtacatctcaattgcaAGAAGACACCACATCTGtttagcaagtcagccatatcagctatgcttttttaaaaggcagtaaatgaggctgaatgaactgtttcgctgccagacaaggctctgctgatagccaggtgtagcagtggtaaggtgttgggactgctgttggaactctgctgttgggacagctttatgtaggccctaccAGTTTGTGAGCACGGTTTGTCACCGTTATATTGCAATTAATGTTTtgtttattgttgtgttgtgttgtgtagtggcttttctGGCATGCATAAATCAAAAGTAAAAAAATGTCACACCATTATTTACACGCTAAAATTGCCACTGATTATGTCAGTCTCATTTGCAATTCACTGTCATAGCCCCACATTAAAAATATGTGAGGGTGAGTTGAGAAAATCAGAAATCAGAAATACTTttagaatgtttttcaattgactgccaCAGCACCAAATAAAATGCACCAAATGGCAtttagaaaaacaaacatttttggtGTTCATTTTAATTGTTTTAAGGCGATAATTTTCAAATATCAAAATGGTGTCGTGGGACAAAAAAGTTTGCGGATCACTGGCATAGAGTATATATTTGGCTTGCAGTAACTAAACTGGCCATGGAGAGGGGCAGCTTTCCTATAAAGTAGTGTAATGAGGAAGCCAATAAGATACAGATGTCTTGATAAAACCTGGACCCTCCCTGTTTCCCTACGTGATTCTTGCTGGAAGGTTCAACTGACTGGTTACACATTAACCAGAGGAGCTAGAGCATGCTGTCTCATTATCAAATATTTCTGTTTCATAATTATGGCTACTCAATAGCCTTTAGCATTAGCAATTTGGTAAATGGGAAGTTGGAATGAATAATATTTGAGACTATAGGTGGTACATATACAACAAAACAGGCCATTCATATATACACAAGGTGCCGTGGCTGAGTATTGGAGAAGGACAAGACACAGCGTTGTTCTGGGACTATTTGACTGTTAGCTATTACCATCACCATGGGATGTTTTGGCTCAAAACCAGAAGAACAGAAGAGCACAGTGGATTCAACAAAGAAGGGTTATGACTCAACTGCAGAGCAAGAAAACCCTTTACAGACAGATACTCATGTCAAACTATCTCCTAAGAAAGATGCATCAGCAAGATCCATCAAGAAGACTGCAAAGTTCGATATAAATCAAGCACGCTCACATGAAGTGGATGTTACTCTGGATGTGGACACTGCTCACCCTAAGCTGAAGATACATGGGAACTCACTACAGTGGACTAATGAATCACCACAGAGAAAAATTAAAGTTGAAAACTGTTTTGATGAAGAGCCTTTTGTGTTGGGCAAAATGGGCAGTCCTTTGAAGACTTACTGGGAGGTGAATGTGAAGGAGAAGGATGACTGGCTGCTTGGCGTTGCCAAGGAAACGGCTAACAGGAAGGGGCCGTTGGCTTTCAGTCCAACTAATGGCTTCTGGGTAATCAGACTATCCAATGGGCAAAGACTTAAAGCCATGGAGGATGAAGAACATGTTCTTGACAAAGGTATTCCAGATAAAGTCGGTATCTATCTGGATTATCAGGAAAGGAAGGTGACTTTCTTTAATGCAGAAGAAGGTTCGCTCATCTACTCATTTATTAATGGACCAAGTTATCAGGATGATGTCCTCCCACTTTTCTCACCCTGGAACAACGATGCAGATCCAATCACAATTTTGCCCATTACAGCAACATAAAAAAACATCATTCATCACATACCCTGTATGTCAATAGCTTATTGTGGTATAAAGCTATGTGAATCATTTTCGATTAAGTGATGTACAGAATTGTGGATTAATTCTCATCCTTTGCTGTCATCGAACCAGGCATCAATGTTGTGTTCCCTATTCTTTATTAATATATTAGACATTCATTATTTCAGTAGAGTATTGTGTGTGAGATTAAACATGCATTTTTGTTTTAA
>XR_005053422.1
GGTTgtcagggagaacactgtaagaatggcccatgttctcaATTCTGTCGCAGTACATtttaaaagtgctgaacaaatagttatattgactacgtcagTCCTAGCtctctcattaatgtcttaatcaatgttatggattgcctcttatccgctcattgtccccttatgccatagtttgtacatctcaattgcaAGAAGACACCACATCTGtttagcaagtcagccatatcagctatgcttttttaaaaggcagtaaatgaggctgaatgaactgtttcgctgccagacaaggctctgctgatagccaggtgtagcagtggtaaggtgttgggactgctgttggaactctgctgttgggacagctttatgtaggccctaccAGTTTGTGAGCACGGTTTGTCACCGTTATATTGCAATTAATGTTTtgtttattgttgtgttgtgttgtgtagtggcttttctGGCATGCATAAATCAAAAGTAAAAAAATGTCACACCATTATTTACACGCTAAAATTGCCACTGATTATGTCAGTCTCATTTGCAATTCACTGTCATAGCCCCACATTAAAAATATGTGAGGGTGAGTTGAGAAAATCAGAAATCAGAAATACTTttagaatgtttttcaattgactgccaCAGCACCAAATAAAATGCACCAAATGGCAtttagaaaaacaaacatttttggtGTTCATTTTAATTGTTTTAAGGCGATAATTTTCAAATATCAAAATGGTGTCGTGGGACAAAAAAGTTTGCGGATCACTGGCATAGAGTATATATTTGGCTTGCAGTAACTAAACTGGCCATGGAGAGGGGCAGCTTTCCTATAAAGTAGTGTAATGAGGAAGCCAATAAGATACAGATGTCTTGATAAAACCTGGACCCTCCCTGTTTCCCTACGTGATTCTTGCTGGAAGGTTCAACTGACTGGTTACACATTAACCAGAGGAGCTAGAGCATGCTGTCTCATTATCAAATATTTCTGTTTCATAATTATGGCTACTCAATAGCCTTTAGCATTAGCAATTTGGTAAATGGGAAGTTGGAATGAATAATATTTGAGACTATAGGTGGTACATATACAACAAAACAGGCCATTCATATATACACAAGGTGCCGTGGCTGAGTATTGGAGAAGGACAAGACACAGCGTTGTTCTGGGACTATTTGACTGTTAGCTATTACCATCACCATGGGATGTTTTGGCTCAAAACCAGAAGAACAGAAGAGCACAGTGGATTCAACAAAGAAGGGTTATGACTCAACTGCAGAGCAAGAAAACCCTTTACAGACAGATACTCATGTCAAACTATCTCCTAAGAAAGgtcagggcgtgactaagATGCATCAGCAAGATCCATCAAGAAGACTGCAAAGTTCGATATAAATCAAGCACGCTCACATGAAGTGGATGTTACTCTGGATGTGGACACTGCTCACCCTAAGCTGAAGATACATGGGAACTCACTACAGTGGACTAATGAATCACCACAGAGAAAAATTAAAGTTGAAAACTGTTTTGATGAAGAGCCTTTTGTGTTGGGCAAAATGGGCAGTCCTTTGAAGACTTACTGGGAGGTGAATGTGAAGGAGAAGGATGACTGGCTGCTTGGCGTTGCCAAGGAAACGGCTAACAGGAAGGGGCCGTTGGCTTTCAGTCCAACTAATGGCTTCTGGGTAATCAGACTATCCAATGGGCAAAGACTTAAAGCCATGGAGGATGAAGAACATGTTCTTGACAAAGGTATTCCAGATAAAGTCGGTATCTATCTGGATTATCAGGAAAGGAAGGTGACTTTCTTTAATGCAGAAGAAGGTTCGCTCATCTACTCATTTATTAATGGACCAAGTTATCAGGATGATGTCCTCCCACTTTTCTCACCCTGGAACAACGATGCAGATCCAATCACAATTTTGCCCATTACAGCAACATAAAAAAACATCATTCATCACATACCCTGTATGTCAATAGCTTATTGTGGTATAAAGCTATGTGAATCATTTTCGATTAAGTGATGTACAGAATTGTGGATTAATTCTCATCCTTTGCTGTCATCGAACCAGGCATCAATGTTGTGTTCCCTATTCTTTATTAATATATTAGACATTCATTATTTCAGTAGAGTATTGTGTGTGAGATTAAACATGCATTTTTGTTTTAA
>XM_021614729.2
GTATTGTGAAAGATCCCAGTTCAAATGTAAAAGCAATtttctgattgagccgacatacgGTATGCAGCATTTACTGTTAATGCAGTCTCCGCAAATTCTTGAACATTGTCTTTAAAATTCAATCGAGCTATAACGTGGATCTGCAATACTTCTGCAATatggattgaatccagccctcaATCATTAGCCCTAAATACATGATGTGATGTATTGAGGAATATTTGACTGTTAGCTGTTACCGTTTAGCCACCATCTCCATGGCAATAGCCACCATCACCATGGGATGTTTTGGCTCAAAACCAGAAGAACAGAAGAGCACAGTGGATTCAACAAAGAAGGGTTATGACTCAACTGCAGAGCAAGAAAACCCTTTACAGACAGATACTCATGTCAAACTATCTCCTAAGAAAGATGCATCAGCAAGATCCATCAAGAAGACTGCAAAGTTCGATATAAATCAAGCACGCTCACATGAAGTGGATGTTACTCTGGATGTGGACACTGCTCACCCTAAGCTGAAGATACATGGGAACTCACTACAGTGGACTAATGAATCACCACAGAGAAAAATTAAAGTTGAAAACTGTTTTGATGAAGAGCCTTTTGTGTTGGGCAAAATGGGCAGTCCTTTGAAGACTTACTGGGAGGTGAATGTGAAGGAGAAGGATGACTGGCTGCTTGGCGTTGCCAAGGAAACGGCTAACAGGAAGGGGCCGTTGGCTTTCAGTCCAACTAATGGCTTCTGGGTAATCAGACTATCCAATGGGCAAAGACTTAAAGCCATGGAGGATGAAGAACATGTTCTTGACAAAGGTATTCCAGATAAAGTCGGTATCTATCTGGATTATCAGGAAAGGAAGGTGACTTTCTTTAATGCAGAAGAAGGTTCGCTCATCTACTCATTTATTAATGGACCAAGTTATCAGGATGATGTCCTCCCACTTTTCTCACCCTGGAACAACGATGCAGATCCAATCACAATTTTGCCCATTACAGCAACATAAAAAAACATCATTCATCACATACCCTGTATGTCAATAGCTTATTGTGGTATAAAGCTATGTGAATCATTTTCGATTAAGTGATGTACAGAATTGTGGATTAATTCTCATCCTTTGCTGTCATCGAACCAGGCATCAATGTTGTGTTCCCTATTCTTTATTAATATATTAGACATTCATTATTTCAGTAGAGTATTGTGTGTGAGATTAAACATGCATTTTTGTTTTAA

Function

NR:

description
butyrophilin subfamily 1 member A1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614730.2 False 2175 mRNA 0.39 8 13602391 13611243
XM_021614731.2 False 2154 mRNA 0.39 8 13602391 13611243
XR_005053422.1 False 2171 mRNA 0.40 9 13602391 13611243
XM_021614729.2 True 1231 mRNA 0.40 7 13604860 13611243
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Neighbor

gene id symbol gene type direction distance location
LOC110531521 NA coding upstream 49 13598352 ~ 13602342 (+)
LOC110531519 LOC106577953 coding upstream 10386 13559375 ~ 13592005 (+)
LOC110531503 LOC106577949 coding upstream 226524 13366370 ~ 13375867 (+)
LOC118966160 LOC106577945 coding upstream 278500 13321306 ~ 13323891 (+)
LOC110532923 LOC106577978 coding upstream 292376 13299386 ~ 13310015 (+)
LOC110531525 LOC106577958 coding downstream 40022 13651265 ~ 13667682 (+)
LOC118966141 LOC106577961 coding downstream 71053 13682296 ~ 13694583 (+)
LOC110531534 LOC106577991 coding downstream 285514 13896757 ~ 13904735 (+)
cbln11 LOC106577971 coding downstream 394558 14005801 ~ 14009421 (+)
LOC100301641 LOC100301641 coding downstream 398314 14009557 ~ 14017498 (+)
G772354 NA non-coding upstream 44374 13557704 ~ 13558017 (+)
G772330 NA non-coding upstream 64669 13537312 ~ 13537722 (+)
G772328 NA non-coding upstream 66949 13535062 ~ 13535442 (+)
G772326 NA non-coding upstream 69489 13532582 ~ 13532902 (+)
G772325 NA non-coding upstream 69897 13532190 ~ 13532494 (+)
G772338 LOC106577957 non-coding downstream 13944 13625187 ~ 13626814 (+)
G772401 NA non-coding downstream 58261 13669504 ~ 13708398 (+)
G772458 LOC106609922 non-coding downstream 156691 13767934 ~ 13826312 (+)
G772486 NA non-coding downstream 205734 13816977 ~ 13824433 (+)
G772540 NA non-coding downstream 306759 13918002 ~ 14018373 (+)
G772241 LOC106577945 other upstream 209670 13391797 ~ 13392721 (+)
LOC110531509 tmm85 other upstream 507321 13087000 ~ 13095070 (+)
G772033 LOC106577932 other upstream 638820 12938462 ~ 12963571 (+)
LOC110531469 LOC106577901 other upstream 1196384 12317006 ~ 12406007 (+)
G769713 NA other upstream 2818983 10783091 ~ 10783408 (+)
G772402 LOC106577959 other downstream 60567 13671810 ~ 13710443 (+)
G773437 NA other downstream 413630 14024873 ~ 14028528 (+)
G773535 LOC106577997 other downstream 602206 14213449 ~ 14216852 (+)

Expression

LOC110531520(LOC106577955) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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LOC110531520(LOC106577955) Expression in each Bioproject

Bar chart with 18 bars.
LOC110531520(LOC106577955) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network