LOC110531529 (LOC106577990)


Basic Information

Item Value
gene id LOC110531529
gene name LOC106577990
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 13746627 ~ 13755370 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989190.1
cttgcaaccttccagttactagtccaacgctctaaacactaggctaccctgagcCCATGCAAGGGCTCACCATCCattatatcaacatgttttgaggATACATAGTGTTTGTTTCCAAACATtgaagtaaaacaagcttatattttgggttccgATGGAGTactacagttgaactaagctcatgaggtatTTAAAaagatgtagcaactgcagactgTATGTTTAATGAACGAGGAATACTGAATCTGATATCTCTAACATCCCATATCAGACATGGCCTTCTCATCTGCAGTCTCCATCTCCATCAACACCCCTGTCCTGATTGAGCAGCACCTCAACTGCTCCATCTGTCTGGGCCTGTTTAAGGACCCGGTCACCACCCCCTGTGGCCACACCTTCTGCCAGACTTGCCTGGAATGCAACCTCCACTTCAATGACCTCATATGCCCCATCTGTAAGGAGCATCTGAGGAGGAACCCACAGGTGAATATCATCCTCAGTACTCTTATTCAGGAGTTGAAAAAGGCCCAGGAGAGGAAGCCAGGGGAGTATTCTGGAGCTCCAGGTGAGGTGGCCTGTGACGTctgcactgagaggaagctcaagGCCCAAAAgtcctgtctggtgtgtctggccTCATATTGCGAGACTCACCTGGGCCCCCACACCTCAGCAGGCAGGCTGAAGGGCCACAGGCTGGTGGCCCCTGTGAAGGACCTGGATGGGAGGGCGTGTCTGACCCACGGTCGTCCCCTGGAGCTGTATAGCAGGGCAGAGGGGCACTGTGTCTGTGCCCTCTGTGTGGAGGAGGGTCACGAGGTCATCTCCGTGGAAATGGAGTGGGACAGGAAGAAGGGTAACCTGGAGAGCACCAAGGCTGATATTCAGGAGAGAatcctggagagggagagaaaggtggAGGAGATCAGGGTGTCTGTGGAGCAGTGCAAGGCCCacgtggacagagagaggagggagattgaCTCTGTGTTCAAAGCAGTGATAGCAACTGTAGAGGAGACCCATCTAGATGCTCTCAGGCCCATGGAGGAGAGGCagcaggaggtggagagagaggcaggagaactCACCCAGGAGCtgaagagagagatcagagaacTGAAAGAAACCATTGGTCAATTGGAGGATGTTGCTGACCTCAAGGATCACATTCACTTCCTGCAGACTTTCCCATCCCTGTCGGGGCTGGGTGATGGCAGAGACTGGACTGAGGCCTCCATTGATACTACACTCTCCTTTGGCACCATGAGAAGCAGCTGGTCGACCATGATGGAGAGAATCAAGCACGAGCTGGAGAAGCTCTCCTCAGTTGaacttgagaggatcctGAAGTTTGCAGTTGATGTGACATTGGACCCGGACACAGCAAACACACAGCTGATTCTATCTGAGGACGGGAAAgaagtgagagatggagggaagataCAGGACATCCCTGACTGTCCGCATCGCTTCGATCACTTCGGCAGCGTCCTAGGACACAACAAGCTAACCTCTGGGAGATCATACTGGGAGGTGGATGTCGGGAACAAGACGGGTTGGGATCTGGGAATAGCAAGAGGAGATGCCAACAGGAAGGGGAAGCTCTCTGTGAATCCTACTAACGGTTACTGGGTTATAGTGAATTATAATGGTGCCAAATACGGAGCCTTGGGGGACCCACCTTTTCTGTTGTCACTGAGAGAAAAGCCCCAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGGTTGGTGTCTTTTTATGATGTGGAGGCTAAGGCTCACATACATTCTTTCACTGGGTATTCCTTTATTGGGGAAATATATCCATATCTCAGCCCACATCTTCTGAATGGGGAGGAGAACTCAGACCCACTGGTCATCACCAAAACAGGGTGATGTCACGCATTGCTCAGCCTTATAGGTAAAATACATTCACTTCAGGTTAGGATTAGGGCTACAGCTAGAGTTTGGGTTGGGTCGGGTTAGGGTTGTGGCGGTCACAAAATTGTCAGCcgatgattgtcaagcaaataactgtcggtgtCAAGGTagttgaccgttaattaacaaacacatttagcatctcctggcttccacacatacaAGCCACTGGTGCAGACCTTTGGAACGTTAACATTTGAAAAAGTCTAAtaagtccatgtaatatagcctacaaattcacaacaaatccattatttattttagacaggtctaaagaagcatgattttaggaaaatgtagtctatttcagaagaacagaatagcatactttGATATGTCCTTAttttaggtcctgatctggctatgccaaatggctgtgggctacactagttcatttaaaaggcatgagctctgcttagttttttggtgcaggctgtacacactacatcagtcactcATTCACAATTTACAAGCACTTGATGATGCCTAGAATTTTAGTGGCCGTAATGCATCCTAAAAAATGTCATGTCTTTTGCAGCCAGTTGCCATTGTGCCCTTCTTCCTGAGTGCTGTTCGCTCTGaatcacctctcactcacatggctctccatcacttgatcaagtctttctcacaggctacaagtgaagggGGACACAACTGcgcgcgtccttatccaattccgaggttcATATTTAAgttattggaagaactgtccacatttacttttcgtcagccaacatgATGAGTAGGCCTaccgaacagcaaaagcactagcctatgtcaatctactatcccccatagtgcAAAAGTCAACCTATTTTGTTCTATGcgataaataaatattccaaaacaacaGTCTGGgccagttgtgggatgtgatagatcccaaattaatacaaccactagcatcaaaaaaactTTTTTATGCAATATGACTGACCCAACAGATCAGAacttttagcttaaaatgttaggctattaggctatttcttcacataagcgcagcaatgcgcacatggtagtaggctataaTTAGCGGAAAACACTTATCAAAAGTGACTGCAAATACAATTATGCTTGTAATGCTGTTATTACAAAGGTGCATTTTTCTGGTGAAAATTATCTTACCCAAACTTTAAACTCACACGCTGCTTATGTATGTCTGTTAGGTTTTACACCCtgtgtaaagcggattaatgtgcttagttttaagaagttatttggcaactttagactacatgaggtgtgcaactatgattagaaaaagtCGCATAAAAAGtcattgtttcttatgctgggca
>XM_021614748.2
AATACCTGATTCAGGGAAAGGGGTGTGGATTTATTTGCAGAACGAAACTCAAGGCAGAAAAGACAGAGATAAATAGAGATACGCAGGGAGTATAGGAGCCTAAAGTAAAGGAAGATCGCATCAGCTGAAAGACATGGCCTTCTCATCTGCAGTCTCCATCTCCATCAACACCCCTGTCCTGATTGAGCAGCACCTCAACTGCTCCATCTGTCTGGGCCTGTTTAAGGACCCGGTCACCACCCCCTGTGGCCACACCTTCTGCCAGACTTGCCTGGAATGCAACCTCCACTTCAATGACCTCATATGCCCCATCTGTAAGGAGCATCTGAGGAGGAACCCACAGGTGAATATCATCCTCAGTACTCTTATTCAGGAGTTGAAAAAGGCCCAGGAGAGGAAGCCAGGGGAGTATTCTGGAGCTCCAGGTGAGGTGGCCTGTGACGTctgcactgagaggaagctcaagGCCCAAAAgtcctgtctggtgtgtctggccTCATATTGCGAGACTCACCTGGGCCCCCACACCTCAGCAGGCAGGCTGAAGGGCCACAGGCTGGTGGCCCCTGTGAAGGACCTGGATGGGAGGGCGTGTCTGACCCACGGTCGTCCCCTGGAGCTGTATAGCAGGGCAGAGGGGCACTGTGTCTGTGCCCTCTGTGTGGAGGAGGGTCACGAGGTCATCTCCGTGGAAATGGAGTGGGACAGGAAGAAGGGTAACCTGGAGAGCACCAAGGCTGATATTCAGGAGAGAatcctggagagggagagaaaggtggAGGAGATCAGGGTGTCTGTGGAGCAGTGCAAGGCCCacgtggacagagagaggagggagattgaCTCTGTGTTCAAAGCAGTGATAGCAACTGTAGAGGAGACCCATCTAGATGCTCTCAGGCCCATGGAGGAGAGGCagcaggaggtggagagagaggcaggagaactCACCCAGGAGCtgaagagagagatcagagaacTGAAAGAAACCATTGGTCAATTGGAGGATGTTGCTGACCTCAAGGATCACATTCACTTCCTGCAGACTTTCCCATCCCTGTCGGGGCTGGGTGATGGCAGAGACTGGACTGAGGCCTCCATTGATACTACACTCTCCTTTGGCACCATGAGAAGCAGCTGGTCGACCATGATGGAGAGAATCAAGCACGAGCTGGAGAAGCTCTCCTCAGTTGaacttgagaggatcctGAAGTTTGCAGTTGATGTGACATTGGACCCGGACACAGCAAACACACAGCTGATTCTATCTGAGGACGGGAAAgaagtgagagatggagggaagataCAGGACATCCCTGACTGTCCGCATCGCTTCGATCACTTCGGCAGCGTCCTAGGACACAACAAGCTAACCTCTGGGAGATCATACTGGGAGGTGGATGTCGGGAACAAGACGGGTTGGGATCTGGGAATAGCAAGAGGAGATGCCAACAGGAAGGGGAAGCTCTCTGTGAATCCTACTAACGGTTACTGGGTTATAGTGAATTATAATGGTGCCAAATACGGAGCCTTGGGGGACCCACCTTTTCTGTTGTCACTGAGAGAAAAGCCCCAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGGTTGGTGTCTTTTTATGATGTGGAGGCTAAGGCTCACATACATTCTTTCACTGGGTATTCCTTTATTGGGGAAATATATCCATATCTCAGCCCACATCTTCTGAATGGGGAGGAGAACTCAGACCCACTGGTCATCACCAAAACAGGGTGATGTCACGCATTGCTCAGCCTTATAGGTAAAATACATTCACTTCAGGTTAGGATTAGGGCTACAGCTAGAGTTTGGGTTGGGTCGGGTTAGGGTTGTGGCGGTCACAAAATTGTCAGCcgatgattgtcaagcaaataactgtcggtgtCAAGGTagttgaccgttaattaacaaacacatttagcatctcctggcttccacacatacaAGCCACTGGTGCAGACCTTTGGAACGTTAACATTTGAAAAAGTCTAAtaagtccatgtaatatagcctacaaattcacaacaaatccattatttattttagacaggtctaaagaagcatgattttaggaaaatgtagtctatttcagaagaacagaatagcatactttGATATGTCCTTAttttaggtcctgatctggctatgccaaatggctgtgggctacactagttcatttaaaaggcatgagctctgcttagttttttggtgcaggctgtacacactacatcagtcactcATTCACAATTTACAAGCACTTGATGATGCCTAGAATTTTAGTGGCCGTAATGCATCCTAAAAAATGTCATGTCTTTTGCAGCCAGTTGCCATTGTGCCCTTCTTCCTGAGTGCTGTTCGCTCTGaatcacctctcactcacatggctctccatcacttgatcaagtctttctcacaggctacaagtgaagggGGACACAACTGcgcgcgtccttatccaattccgaggttcATATTTAAgttattggaagaactgtccacatttacttttcgtcagccaacatgATGAGTAGGCCTaccgaacagcaaaagcactagcctatgtcaatctactatcccccatagtgcAAAAGTCAACCTATTTTGTTCTATGcgataaataaatattccaaaacaacaGTCTGGgccagttgtgggatgtgatagatcccaaattaatacaaccactagcatcaaaaaaactTTTTTATGCAATATGACTGACCCAACAGATCAGAacttttagcttaaaatgttaggctattaggctatttcttcacataagcgcagcaatgcgcacatggtagtaggctataaTTAGCGGAAAACACTTATCAAAAGTGACTGCAAATACAATTATGCTTGTAATGCTGTTATTACAAAGGTGCATTTTTCTGGTGAAAATTATCTTACCCAAACTTTAAACTCACACGCTGCTTATGTATGTCTGTTAGGTTTTACACCCtgtgtaaagcggattaatgtgcttagttttaagaagttatttggcaactttagactacatgaggtgtgcaactatgattagaaaaagtCGCATAAAAAGtcattgtttcttatgctgggca
>XM_036989192.1
AATACCTGATTCAGGGAAAGGGGTGTGGATTTATTTGCAGAACGAAACTCAAGGCAGAAAAGACAGAGATAAATAGAGATACGCAGGGAGTATAGGAGCCTAAAGTAAAGGAAGATCGCATCAGCTGAAAGACATGGCCTTCTCATCTGCAGTCTCCATCTCCATCAACACCCCTGTCCTGATTGAGCAGCACCTCAACTGCTCCATCTGTCTGGGCCTGTTTAAGGACCCGGTCACCACCCCCTGTGGCCACACCTTCTGCCAGACTTGCCTGGAATGCAACCTCCACTTCAATGACCTCATATGCCCCATCTGTAAGGAGCATCTGAGGAGGAACCCACAGGTGAATATCATCCTCAGTACTCTTATTCAGGAGTTGAAAAAGGCCCAGGAGAGGAAGCCAGGGGAGTATTCTGGAGCTCCAGGTGAGGTGGCCTGTGACGTctgcactgagaggaagctcaagGCCCAAAAgtcctgtctggtgtgtctggccTCATATTGCGAGACTCACCTGGGCCCCCACACCTCAGCAGGCAGGCTGAAGGGCCACAGGCTGGTGGCCCCTGTGAAGGACCTGGATGGGAGGGCGTGTCTGACCCACGGTCGTCCCCTGGAGCTGTATAGCAGGGCAGAGGGGCACTGTGTCTGTGCCCTCTGTGTGGAGGAGGGTCACGAGGTCATCTCCGTGGAAATGGAGTGGGACAGGAAGAAGGGTAACCTGGAGAGCACCAAGGCTGATATTCAGGAGAGAatcctggagagggagagaaaggtggAGGAGATCAGGGTGTCTGTGGAGCAGTGCAAGGCCCacgtggacagagagaggagggagattgaCTCTGTGTTCAAAGCAGTGATAGCAACTGTAGAGGAGACCCATCTAGATGCTCTCAGGCCCATGGAGGAGAGGCagcaggaggtggagagagaggcaggagaactCACCCAGGAGCtgaagagagagatcagagaacTGAAAGAAACCATTGGTCAATTGGAGGATGTTGCTGACCTCAAGGATCACATTCACTTCCTGCAGACTTTCCCATCCCTGTCGGGGCTGGGTGATGGCAGAGACTGGACTGAGGCCTCCATTGATACTACACTCTCCTTTGGCACCATGAGAAGCAGCTGGTCGACCATGATGGAGAGAATCAAGCACGAGCTGGAGAAGCTCTCCTCAGTTGGTAAAGGAATGAGACAATATAAATCGTACTAAaaatcatacagttgaagt

Function

NR:

description
E3 ubiquitin-protein ligase TRIM39-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989190.1 False 3245 mRNA 0.46 8 13746627 13754247
XM_021614748.2 False 3105 mRNA 0.47 9 13746627 13755370
XM_036989192.1 True 1243 mRNA 0.53 7 13750328 13755370

Neighbor

gene id symbol gene type direction distance location
LOC110532994 NA coding downstream 7396 13737408 ~ 13739231 (-)
LOC110531523 LOC106577960 coding downstream 33098 13667926 ~ 13713529 (-)
LOC110531522 LOC106577957 coding downstream 103508 13625181 ~ 13643119 (-)
LOC110531518 LOC106577952 coding downstream 211148 13488039 ~ 13535479 (-)
sb:cb1081 LOC106577950 coding downstream 267263 13442454 ~ 13483203 (-)
LOC110532926 LOC106577966 coding upstream 10498 13765868 ~ 13778605 (-)
LOC118966161 LOC106577963 coding upstream 25604 13780974 ~ 13788602 (-)
LOC110531527 LOC106577964 coding upstream 36240 13791610 ~ 13801901 (-)
LOC110531528 LOC106577965 coding upstream 46531 13801901 ~ 13810848 (-)
LOC110531530 NA coding upstream 68054 13823424 ~ 13831521 (-)
G773163 NA non-coding downstream 79690 13586326 ~ 13666937 (-)
G773164 NA non-coding downstream 87742 13654981 ~ 13658885 (-)
G773165 LOC106577955 non-coding downstream 143569 13601083 ~ 13603058 (-)
G773200 NA non-coding downstream 188445 13557972 ~ 13558182 (-)
G773187 NA non-coding downstream 207972 13538438 ~ 13538655 (-)
G773313 NA non-coding upstream 33598 13788968 ~ 13843395 (-)
G773390 NA non-coding upstream 152376 13907746 ~ 13907952 (-)
G773395 NA non-coding upstream 160169 13915539 ~ 13916036 (-)
LOC110531536 NA non-coding upstream 162628 13917998 ~ 13943754 (-)
G773403 NA non-coding upstream 179602 13934972 ~ 13935501 (-)
G773168 NA other downstream 47299 13697179 ~ 13699328 (-)
G772877 LOC106577934 other downstream 750217 12994269 ~ 12996410 (-)
G771614 NA other downstream 1775273 11970904 ~ 11971354 (-)
G771540 LOC106577916 other downstream 1857912 11870589 ~ 11916867 (-)
LOC110531538 NA other upstream 224958 13977459 ~ 13987582 (-)
LOC118966145 LOC106599223 other upstream 494031 14249401 ~ 14254157 (-)
G774427 LOC106578022 other upstream 968684 14724054 ~ 14724522 (-)
G774562 LOC106577809 other upstream 1482688 15238058 ~ 15253973 (-)
G774702 LOC106577875 other upstream 1596937 15352307 ~ 15361319 (-)

Expression


Co-expression Network