LOC110531528 (LOC106577965)


Basic Information

Item Value
gene id LOC110531528
gene name LOC106577965
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 13801901 ~ 13810848 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614747.2
AACTTCCAGTGATGTGGTTTTTTCATGAAAGAGGGAGGAGTTTACCAGTCTTCAAAATGCCACCTGAACTCAATCAAGGAAATTCATCAGATTGTGTTTCCCACCAGAAGTGGAAGGTAATTGTTTGCTTGTGAGCGGTGTTCTGCATACATAGACAGCTTGAAGAGATGGCGTCTTACAGCGCCATGTCAGAGGACCAGTTCCTGTGCTCCATCTGTCTTGGTGTTTTCACCAACCCGGCCACAATCCCGTGTGGACACACCTTTTGCAAGTCTTGTCTCGAGGGTGACTGGAACAGCAGTGGAGACTATGCAGTCTGTGCTGTGTGCAATATGAGGTTCACACCTACCCCCACCATCCTGGTCAACATAGTCCTGAGAGACCTTGTGGAAAGTTTCAAGGGGGCGAGTAGATGTGGCGGCTCGGCCGTAGACATTCCCACTGTGGCTCCGGGAGAGGTCTCCTGTGACGCGTGCTTAGGATACGGGATGACCAAGGCTGTcaagacctgcctggtgtgtgtgtcGTCGTACTGCCTGGAGCATGAAGTGGTTCACAATACCCGGTTCTCCAGGCATCAGCTGGTCAGGCCCCTGGCTAACCTGGAGAAGAGGATGTGTTCGAACCATGAGAGGCTCCTGGAGCGTTACTGCCGCACTGACAAGACCATGCTGTGTGCGGGGTGTGATACTCACCCGGAGCCGGCCCACCAGGTTGTGTCGATGCAGGTAGAGTTCTTGGCTCAAAAGGCTCAGCTGACTGAAGCCCAAGCAGAGGTAAAGGAGAAGCTGAAGGCCACTCGGAAAGAAGCAGAGCAATTCAACTCTTCATTCCATCACTGCaagGATGTAGCGACGAGCCAGATCCGGTTTGTGAATGGGTTCCGACTAGACCTGGTCAGCAAGGTGGGGCAGATTTGTGAACGCTACAACATTGAGGCCCGTAGGAGGGTGGATGAGATGAAGAGCACAGCCTCCCATCAGAGACGTGTGCTTGAAGATCACATAACAGCTCTGACGAGCAGAGGTGCCGAGCTGGAGCGGCTGATTGGCTCCTCAGACTCCTTTGCGTTTCTTAATattcttccctctctcccttctgctcTTCCAGATGGGGTCGGAGAACAATGCAGCATCAACATCCCCCCGAACCTACTGGGAAACCTTCTGTATACCTTAATGAAAGACATGGACAAACTAGCCAAGATGGGCAACTTGTCTACAAATGGCTATGCTGCCCCAGAGATTGCCGTGGTTAAAAAGTTCACAGttGAGGTGACTCCTGACCCCAGCACAGCCCACCCATCGCTCCTGTTCAAACAGGCGTCACGTGAGATCCGAGTGGACCAGAGCACGAGGCGAAACGTCTGGCCCATGTCTGCTCAGCGCTTCACCCAGGTGCTGTGCGTCCTCGCCCCCCAGGGGTTCAGCAGCCACCGAGCAtactgggaggtggaggtggagaactGGACTTCGATGGGAtctggtgtgtggtgtgtgggtgtggcaACTATATCCTCCATGACATCACGAGGGGTGGATCTCACCCCTGAGAAGGGGTTCTGGGTCCTGGTTCACCGCGGGGGAAAGCTTTGGCCCTCCACCAACACAACCCCTGTGGCTGTCGGAACACAAAGGAGAATGGCACATGTGGGTGTGTACTTTGATGGGCGGGAGCGGCGCGTGTCTTTCTACGACGTGAATCTCGGTCATCACCTCTACACATACCACCACGTGCCAACCAATGAAAGACTCTTCCCTGTCTTCAGCCCTGATTTCTTCAGTCCTGGAGACAACCCCGCCAACCACGTCATGATTGTTAGACCCTTTGCTGCTACAAACCACCAACGTGGATGATGATGCTCAGAGCCAGTCCAAGCCTTTTGGGGGAGAATTCTGGTCAAGATCActttacttttttttgtttttcttgtcAATTATTTTtatcaaattaaatgtttttaaagaTGTCTTAATAAAAGTAAAACT
>XM_036989184.1
CTTGAAGAGATGGCGTCTTACAGCGCCATGTCAGAGGACCAGTTCCTGTGCTCCATCTGTCTTGGTGTTTTCACCAACCCGGCCACAATCCCGTGTGGACACACCTTTTGCAAGTCTTGTCTCGAGGGTGACTGGAACAGCAGTGGAGACTATGCAGTCTGTGCTGTGTGCAATATGAGGTTCACACCTACCCCCACCATCCTGGTCAACATAGTCCTGAGAGACCTTGTGGAAAGTTTCAAGGGGGCGAGTAGATGTGGCGGCTCGGCCGTAGACATTCCCACTGTGGCTCCGGGAGAGGTCTCCTGTGACGCGTGCTTAGGATACGGGATGACCAAGGCTGTcaagacctgcctggtgtgtgtgtcGTCGTACTGCCTGGAGCATGAAGTGGTTCACAATACCCGGTTCTCCAGGCATCAGCTGGTCAGGCCCCTGGCTAACCTGGAGAAGAGGATGTGTTCGAACCATGAGAGGCTCCTGGAGCGTTACTGCCGCACTGACAAGACCATGCTGTGTGCGGGGTGTGATACTCACCCGGAGCCGGCCCACCAGGTTGTGTCGATGCAGGTAGAGTTCTTGGCTCAAAAGGCTCAGCTGACTGAAGCCCAAGCAGAGGTAAAGGAGAAGCTGAAGGCCACTCGGAAAGAAGCAGAGCAATTCAACTCTTCATTCCATCACTGCaagGATGTAGCGACGAGCCAGATCCGGTTTGTGAATGGGTTCCGACTAGACCTGGTCAGCAAGGTGGGGCAGATTTGTGAACGCTACAACATTGAGGCCCGTAGGAGGGTGGATGAGATGAAGAGCACAGCCTCCCATCAGAGACGTGTGCTTGAAGATCACATAACAGCTCTGACGAGCAGAGGTGCCGAGCTGGAGCGGCTGATTGGCTCCTCAGACTCCTTTGCGTTTCTTAATattcttccctctctcccttctgctcTTCCAGATGGGGTCGGAGAACAATGCAGCATCAACATCCCCCCGAACCTACTGGGAAACCTTCTGTATACCTTAATGAAAGACATGGACAAACTAGCCAAGATGGGCAACTTGTCTACAAATGGCTATGCTGCCCCAGAGATTGCCGTGGTTAAAAAGTTCACAGttGAGGTGACTCCTGACCCCAGCACAGCCCACCCATCGCTCCTGTTCAAACAGGCGTCACGTGAGATCCGAGTGGACCAGAGCACGAGGCGAAACGTCTGGCCCATGTCTGCTCAGCGCTTCACCCAGGTGCTGTGCGTCCTCGCCCCCCAGGGGTTCAGCAGCCACCGAGCAtactgggaggtggaggtggagaactGGACTTCGATGGGAtctggtgtgtggtgtgtgggtgtggcaACTATATCCTCCATGACATCACGAGGGGTGGATCTCACCCCTGAGAAGGGGTTCTGGGTCCTGGTTCACCGCGGGGGAAAGCTTTGGCCCTCCACCAACACAACCCCTGTGGCTGTCGGAACACAAAGGAGAATGcTGGCATCACTCAAGTTGGCTGCAGCAGAACACGACCTGATCATAATGCCCTtggtcaatttggtttgacagtggatatccctatggggctagtTGGAGACCATCAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614747.2 False 1988 mRNA 0.52 8 13801901 13810848
XM_036989184.1 True 1592 mRNA 0.55 7 13802855 13806762

Neighbor

gene id symbol gene type direction distance location
LOC118966161 LOC106577963 coding downstream 13299 13780974 ~ 13788602 (-)
LOC110532926 LOC106577966 coding downstream 23296 13765868 ~ 13778605 (-)
LOC110531529 LOC106577990 coding downstream 46531 13746627 ~ 13755370 (-)
LOC110532994 NA coding downstream 62670 13737408 ~ 13739231 (-)
LOC110531523 LOC106577960 coding downstream 88372 13667926 ~ 13713529 (-)
LOC110531530 NA coding upstream 12576 13823424 ~ 13831521 (-)
LOC110531533 LOC106577984 coding upstream 53872 13864720 ~ 13880101 (-)
LOC110531536 NA coding upstream 111996 13917998 ~ 13943754 (-)
LOC110531537 LOC106577970 coding upstream 135463 13946311 ~ 13969993 (-)
LOC110531538 NA coding upstream 166611 13977459 ~ 13987582 (-)
G773163 NA non-coding downstream 134964 13586326 ~ 13666937 (-)
G773164 NA non-coding downstream 143016 13654981 ~ 13658885 (-)
G773165 LOC106577955 non-coding downstream 198843 13601083 ~ 13603058 (-)
G773200 NA non-coding downstream 243719 13557972 ~ 13558182 (-)
G773187 NA non-coding downstream 263246 13538438 ~ 13538655 (-)
G773390 NA non-coding upstream 96898 13907746 ~ 13907952 (-)
G773395 NA non-coding upstream 104691 13915539 ~ 13916036 (-)
G773403 NA non-coding upstream 124124 13934972 ~ 13935501 (-)
G773405 NA non-coding upstream 126086 13936934 ~ 13937373 (-)
G773168 NA other downstream 102573 13697179 ~ 13699328 (-)
G772877 LOC106577934 other downstream 805491 12994269 ~ 12996410 (-)
G771614 NA other downstream 1830547 11970904 ~ 11971354 (-)
G771540 LOC106577916 other downstream 1913186 11870589 ~ 11916867 (-)
LOC118966145 LOC106599223 other upstream 438553 14249401 ~ 14254157 (-)
G774427 LOC106578022 other upstream 913206 14724054 ~ 14724522 (-)
G774562 LOC106577809 other upstream 1427210 15238058 ~ 15253973 (-)
G774702 LOC106577875 other upstream 1541459 15352307 ~ 15361319 (-)

Expression


Co-expression Network