LOC110531530


Basic Information

Item Value
gene id LOC110531530
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 13823424 ~ 13831521 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614749.2
AAATAGGATAGACGACACATTCACAGATATGGCTTCCTCCCTGAATGAAAGCCAATTCCAGTGCTCCATCTGTCTAGAGTTGTTCACTGACCCAGTTACCACTCCATGTGGCCACAACTTCTGTAAGAATTGTATCGGAGGGTATTGGGATATCAGTGACCTGTGCCAGTGTCCTTTGTGTAAGGAGACATTTTACAGAAGGCCTGAGCTTCGAATCAACACGTCGTTCAGAGAAGTTGTTGATCATTTTAGGAATATGAGAGATAATGAAGGGTGCATTGCTGCAACTGGAGAAGTGGCCTGTGACATCTGCTCTGGGAGGAAGCTCAAGGCCCTGAAGTCCTGCCTGGTGTGCCTGACCTCTTACTGTGAGATTCACCTGGAGCCTCATCAGAGAGTGGTGAATCTGAAGAGACACAAGCTGATTGACCCTGTGGAGAACCTGGAGGACAGGATGTGCAAGAAGCATGATAGGCTGCTGGAGCTGTTCTGTAGGAGCGACCAGACATGTGTGTGTCAGTTTTGTGCTGAGACAGACCACAAACATCACCACACTGTGCCACTACAAACAGAATCGCAACTAAAGATGGCTCTTATTCGGAGGTCAAAGGCGGATGTGCAGCAGATGATCCAAGACCGGCAGCTGAAGGTGGAGGAGATCAACGCTTCAGTGAAGTTAAGTAGAGACAATGCAGAGAGTGAAATAGCGGACAGTGTTGAAGTCTTCACTGCACTGATGCGATCTATTGAGTCAAACCAGGCTGAACTCATAGAGGTGATTGAGGAGAAGCAGAAATCAGCAGAAAGGCAGGCAGAAGGGCTCATCAATGACCTGGAGCAGGAAatcactgagctacagaggagaagtactgagctggagcagctctcacacacCGAGGACCATCTCGACCTTCTACAGAGTTTTTACAAGCAAACTACCCTTCCAAAATCTAAAAGCTGGACTAATGTTGCTGTTTATCAAGTCAACTTCTTGGGCTGTGTTCGAAATACAGTGCTTCAAGTGAAAGACTCCACCGAAGACCAAATAAGAAAGCTGTCAGCTATCGAACTGAAAGAGATGCAGAAATATGCAGTGGACGTGACGATGGACCCCAACACTGCAGGCCCATGGCTTATCCTCTCTAATGATGGAAAACAAGTGAGAAAATCGCCAAGGAAATTGAAGGTCCCAGATAATCCTGAGAGATTCACTGAGGATGTCTGTATCCTGGCCAAACAAGGGTACAACTATGGGAAACATTATTGGGAAGTTGGGTTACAGGAGAAATCAAACTGGGTTATAGGAGTAGCTTGCGAGACAGTGCCTAGGAAGGAATTAATTTCATCTGAGCCTGAGAAAGGGTTATGGACTCTGTGTCACAGGGATGGCAAGGAATATCTGGCGTGCACAAAAATTCCACGCCTTATTTTACCTTTTCCCCGACCCCAGAAAGTCGGTGTCTTCCTGGATTATAAGGAAGGCCAAGTGTCATTCTTTGATGTTGATGCAAAGTCTCACCTATTCACTTTCACAGGGTGCAAATTCTCAGAGAAAATCTTTCCCATATTTGATCCTTGTCGTACTGCAGAAATAAATGAAGACCTTCCTCTTATGATTACTATAGTGCAGGTAAATTAGTGACAGAACACTCCATGCATAGTGTAGCTCCAGctacaatgtactgtatatgcttCAACCGTAGATAAATTAGATGGGCACAGTCAAATGTTCCCATCTTTCCTTTCACTCTCATTTGGAATAGAGGCATCTACGCAATGGGGGACATGGGACGTGGACTCATTTCAACTATAGTTTACTTTGGGGGTCTGAAACTTTTATATTTATTGTAATACATTTTGCAAATATCTTGATTATATTTACCTTCCTTATTGTGACAAAATTAAATGTAATCCTAATTATTCTAATATCCATTTTTGAAATGTACGGTTTATCAAATGGAAATACTgtatttcaaatcaaactttatttgccacatgcaccgaatacaaaaGATGTAGACTTCAccatgaaatgctgacttacaagcccttaaccaacagtgcagttcaagaagaacaaaatatttaccaagtaggctaaaataaaaagtaacacaaaaa

Function

NR:

description
E3 ubiquitin-protein ligase TRIM41-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614749.2 True 2121 mRNA 0.43 7 13823424 13831521

Neighbor

gene id symbol gene type direction distance location
LOC110531528 LOC106577965 coding downstream 12576 13801901 ~ 13810848 (-)
LOC110531527 LOC106577964 coding downstream 21523 13791610 ~ 13801901 (-)
LOC118966161 LOC106577963 coding downstream 34822 13780974 ~ 13788602 (-)
LOC110532926 LOC106577966 coding downstream 44819 13765868 ~ 13778605 (-)
LOC110531529 LOC106577990 coding downstream 68054 13746627 ~ 13755370 (-)
LOC110531533 LOC106577984 coding upstream 33199 13864720 ~ 13880101 (-)
LOC110531536 NA coding upstream 91323 13917998 ~ 13943754 (-)
LOC110531537 LOC106577970 coding upstream 114790 13946311 ~ 13969993 (-)
LOC110531538 NA coding upstream 145938 13977459 ~ 13987582 (-)
LOC110531539 NA coding upstream 158261 13988898 ~ 14002060 (-)
G773163 NA non-coding downstream 156487 13586326 ~ 13666937 (-)
G773164 NA non-coding downstream 164539 13654981 ~ 13658885 (-)
G773165 LOC106577955 non-coding downstream 220366 13601083 ~ 13603058 (-)
G773200 NA non-coding downstream 265242 13557972 ~ 13558182 (-)
G773187 NA non-coding downstream 284769 13538438 ~ 13538655 (-)
G773390 NA non-coding upstream 76225 13907746 ~ 13907952 (-)
G773395 NA non-coding upstream 84018 13915539 ~ 13916036 (-)
G773403 NA non-coding upstream 103451 13934972 ~ 13935501 (-)
G773405 NA non-coding upstream 105413 13936934 ~ 13937373 (-)
G773168 NA other downstream 124096 13697179 ~ 13699328 (-)
G772877 LOC106577934 other downstream 827014 12994269 ~ 12996410 (-)
G771614 NA other downstream 1852070 11970904 ~ 11971354 (-)
G771540 LOC106577916 other downstream 1934709 11870589 ~ 11916867 (-)
LOC118966145 LOC106599223 other upstream 417880 14249401 ~ 14254157 (-)
G774427 LOC106578022 other upstream 892533 14724054 ~ 14724522 (-)
G774562 LOC106577809 other upstream 1406537 15238058 ~ 15253973 (-)
G774702 LOC106577875 other upstream 1520786 15352307 ~ 15361319 (-)

Expression


Co-expression Network