XLOC_026607 (rrn3)


Basic Information

Item Value
gene id XLOC_026607
gene name rrn3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 36589427 ~ 36602500 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051835
AACATTGTGTTTCTCATACATAATGGAGATTGAAGGCAGAGATTTCATCAATACACCACCATTGAAAACGGTGCGCTTTGGAGGCACAGTTGCCAATACTTTGGCTAAACTACAAAAGGGCGACACAAGCGACTATGAGCTGATAAAACATCAACTCTCAGACCCGGATATTAAGGATGCTCAAATTATCAACTGGTTGCAGGAATTTAGGACATGTGTCACTCAGCTTGGCAAAGATCACGAGCAATTAGTATATGTTGTTTTGAAACTGCCGTGGCTTGGTCGCAGTCAGGCTGTGGTGGAAGAATATTTGGCTTTTCTGAGTAACCTGGTGTCGGCACAGACAGTTTATCTCAGAGCTTGTCTTCGAATGGTCGTCACTAATTTTTCACCGAAGAGAATCAGAATCCAAGAAGGAAATGTGGATATTTCAGAttctgatgatgaagatgaaaATCTGCCAAGGACATTTGATAATTGTCATCAAGCTTTACAGCTTATCGCAAGATATGTTCCTTCAACCAGTCGGTTCCTGATGCCAATCCTCACTGACAAGTTTCCTTTTGTGCAGAAATCTTCCAGAACGCTTGAGTGTTATGTACACAACCTGTTGAGGGTTACGGTCTACATCCCTGACCTGAGGAAAGACGTACTAGAGCTCATCATCAGCAAGATGCTTATGCTAGATGTTAGCGCACCGCGAAGTGAGATTGAAGAAGTGGAAAGTGGAGCTCAGCAAGGCGCCAGTGGAGCATCACAGGATGACTGCCTCTTCAACATGGATGAGGAAGAGGACTCACCCCTGAGCTCGGGAGCTGATGGAGGAGCAATGGTTCATCCTGTGGCAGAGAGACTGGACACCATGATGACTGTCCTCCTGGCTTACATTAAAGACGTTTCCCATGTTAATGGTACATTAGATATTGAGAAAACCAAAGCTCTCTACCGAGACCTGGTGTCGGTGTTTGATAAAGTGGTTCTTCCCACTCATGCTTCCTGTCACGTGCAGTTTTACATGTTCTACCTGTGCAGCTTCCGCCTGGGTTTAGCTGAAGCTTTTTTGGATCACTTGTGGAAGCTTTTACAAGGTCCCAACCAGCCCTCCGTCCTCCGGCAGTCCGCTGCTGGATACATGGGCAGCTTCATGGCAAGAGCCAAGTTTTTACCAGTATCGACAGTGAAGGCCTGTCTCGACCTGCTGGTTCCCTGGCTGCACCTTTACATCGACAGTCAGGACTCTGGGTCTAAAGCTTTCTGCGACATCAATCTGCACGGCCCCTTTTATACCGCCTGCCAGGCTGTGTTTTACACGCTCATCTTCAAACACAATGCCATTCTGGAGGGCAATATGAAGAAAGGGCTGGCGTATCTTCAGGGTTTGAATCTGGAGCGTATTGTGATGTGTCAGCTCAACCCACTGAGGGTCTGTCTGCCTGCTGTCACCAACATGTTTGCAGCCATCACCAGGAAGTACCAGCTCGTGTTCTGTTACACCATCATTGAGCGCAACAACCGGCACCTGTTGCCAGTGGTGAGGAGTTCTGTGGGCGGCAGCTCAGTGGCCACCAACACAAACCCCCTGGATAGTTTCTTCCCTTTTGATCCATACCTTCTGAAAAGTTCTGGGAAACTCATTGAGCCGATCTACCAGGTGTGGGAGGAGCCGTCAGACTGTATGATTGGTGTGCCCAAGAAGGAAATCCCAAAGGGCTCTATGGAGGAGGAAGATGATTTTCTGCATGGAGAAACTCCTCATGGAGACTCAATAGTAGGGATGACTCCGGGCTCATATGAATCTCATCTGCAGAGCCCGCGGAGCGTCGGCTCTCCTCCAATCTCCTTCCTGCAGAGACCcttctgatacacacacacacacatctctccatGAGGAGGCGCTggagagcaacacacacacacacacaccagcattaCTCCTACAGcaggagttaaaaaaaaaaacctctaggACATTTTAAGACTGCATCaagacacacacacttcagatGTGTTAATAACAGGAATCAAACTCTGTTGGTGTTTCAAGTAGACAGTTTTCTGGAGAAAGCGTCTGTACAGATGTTGCGATCATGGCTGTGTGCTCATTTGGAGTAGAAAAGAAAGCTGTTTGTAACATTCTTCAGTTGTTTCTGGTGAGGTTTCATTAGTAAATGCAGTCAGTTCCTGTGTGGAGCTGTACATACTAGGTAATGTACATActtcatttaaaaattttaaatactggACTTTCAGTTATTGTGTATAAATATTGCAACTTGCACAGTAAATATTGTTTAACAAGAACAAAACAGTTGTCTGggattttattgtaattttgaaGATGCCATCTAATTTTTAC
>TCONS_00051836
GACAACATCAAGTCATCATTACACTTCAAACCACAAGGTGGCAGAACCTTTCTTTAACACAACCTCCATTTCTGTAACACAACTGAACTAAACCGGCTGCTTCCGTAACAACAAAACAGAGCTTCCGGTTGGCGTATCGCGGCATGGTCACGCATGTGACAGCTACATTATGCGTATAATGCTTAATTTaggtatatatttatttgattaaatactgTTTGAACATTGTGTTTCTCATACATAATGGAGATTGAAGGCAGAGATTTCATCAATACACCACCATTGAAAACGGTGCGCTTTGGAGGCACAGTTGCCAATACTTTGGCTAAACTACAAAAGGGCGACACAAGCGACTATGAGCTGATAAAACATCAACTCTCAGACCCGGATATTAAGGATGCTCAAATTATCAACTGGTTGCAGGAATTTAGGACATGTGTCACTCAGCTTGGCAAAGATCACGAGCAATTAGTATATGTTGTTTTGAAACTGCCGTGGCTTGGTCGCAGTCAGGCTGTGGTGGAAGAATATTTGGCTTTTCTGAGTAACCTGGTGTCGGCACAGACAGTTTATCTCAGAGCTTGTCTTCGAATGGTCGTCACTAATTTTTCACCGAAGAGAATCAGAATCCAAGAAGGAAATGTGGATATTTCAGAttctgatgatgaagatgaaaATCTGCCAAGGACATTTGATAATTGTCATCAAGCTTTACAGCTTATCGCAAGATATGTTCCTTCAACCAGTCGGTTCCTGATGCCAATCCTCACTGACAAGTTTCCTTTTGTGCAGAAATCTTCCAGAACGCTTGAGTGTTATGTACACAACCTGTTGAGGGTTACGGTCTACATCCCTGACCTGAGGAAAGACGTACTAGAGCTCATCATCAGCAAGATGCTTATGCTAGATGTTAGCGCACCGCGAAGTGAGATTGAAGAAGTGGAAAGTGGAGCTCAGCAAGGCGCCAGTGGAGCATCACAGGATGACTGCCTCTTCAACATGGATGAGGAAGAGGACTCACCCCTGAGCTCGGGAGCTGATGGAGGAGCAATGGTTCATCCTGTGGCAGAGAGACTGGACACCATGATGACTGTCCTCCTGGCTTACATTAAAGACGTTTCCCATGTTAATGGTACATTAGATATTGAGAAAACCAAAGCTCTCTACCGAGACCTGGTGTCGGTGTTTGATAAAGTGGTTCTTCCCACTCATGCTTCCTGTCACGTGCAGTTTTACATGTTCTACCTGTGCAGCTTCCGCCTGGGTTTAGCTGAAGCTTTTTTGGATCACTTGTGGAAGCTTTTACAAGGTCCCAACCAGCCCTCCGTCCTCCGGCAGTCCGCTGCTGGATACATGGGCAGCTTCATGGCAAGAGCCAAGTTTTTACCAGTATCGACAGTGAAGGCCTGTCTCGACCTGCTGGTTCCCTGGCTGCACCTTTACATCGACAGTCAGGACTCTGGGTCTAAAGCTTTCTGCGACATCAATCTGCACGGCCCCTTTTATACCGCCTGCCAGGCTGTGTTTTACACGCTCATCTTCAAACACAATGCCATTCTGGAGGGCAATATGAAGAAAGGGCTGGCGTATCTTCAGGGTTTGAATCTGGAGCGTATTGTGATGTGTCAGCTCAACCCACTGAGGGTCTGTCTGCCTGCTGTCACCAACATGTTTGCAGCCATCACCAGGAAGTACCAGCTCGTGTTCTGTTACACCATCATTGAGCGCAACAACCGGCACCTGTTGCCAGTGGTGAGGAGTTCTGTGGGCGGCAGCTCAGTGGCCACCAACACAAACCCCCTGGATAGTTTCTTCCCTTTTGATCCATACCTTCTGAAAAGTTCTGGGAAACTCATTGAGCCGATCTACCAGGTGTGGGAGGAGCCGTCAGACTGTATGATTGGTGTGCCCAAGAAGGAAATCCCAAAGGGCTCTATGGAGGAGGAAGATGATTTTCTGCATGGAGAAACTCCTCATGGAGACTCAATAGTAGGGATGACTCCGGGCTCATATGAATCTCATCTGCAGAGCCCGCGGAGCGTCGGCTCTCCTCCAATCTCCTTCCTGCAGAGACCcttctgatacacacacacacacatctctccatGAGGAGGCGCTggagagcaacacacacacacacacaccagcattaCTCCTACAGcaggagttaaaaaaaaaaacctctaggACATTTTAAGACTGCATCaagacacacacacttcagatGTGTTAATAACAGGAATCAAACTCTGTTGGTGTTTCAAGTAGACAGTTTTCTGGAGAAAGCGTCTGTACAGATGTTGCGATCATGGCTGTGTGCTCATTTGGAGTAGAAAAGAAAGCTGTTTGTAACATTCTTCAGTTGTTTCTGGTGAGGTTTCATTAGTAAATGCAGTCAGTTCCTGTGTGGAGCTGTACATACTAGGTAATGTACATActtcatttaaaaattttaaatactggACTTTCAGTTATTGTGTATAAATATTGCAACTTGCACAGTAAATATTGTTTAACAAGAACAAAA
>TCONS_00051837
CTTCCGGTTGGCGTATCGCGGCATGGTCACGCATGTGACAGCTACATTATGCGTATAATGCTTAATTTagAACATTGTGTTTCTCATACATAATGGAGATTGAAGGCAGAGATTTCATCAATACACCACCATTGAAAACGGTGCGCTTTGGAGGCACAGTTGCCAATACTTTGGCTAAACTACAAAAGGGCGACACAAGCGACTATGAGCTGATAAAACATCAACTCTCAGACCCGGATATTAAGGATGCTCAAATTATCAACTGGTTGCAGGAATTTAGGACATGTGTCACTCAGCTTGGCAAAGATCACGAGCAATTAGTATATGTTGTTTTGAAACTGCCGTGGCTTGGTCGCAGTCAGGCTGTGGTGGAAGAATATTTGGCTTTTCTGAGTAACCTGGTGTCGGCACAGACAGTTTATCTCAGAGCTTGTCTTCGAATGGTCGTCACTAATTTTTCACCGAAGAGAATCAGAATCCAAGAAGGAAATGTGGATATTTCAGAttctgatgatgaagatgaaaATCTGCCAAGGACATTTGATAATTGTCATCAAGCTTTACAGCTTATCGCAAGATATGTTCCTTCAACCAGTCGGTTCCTGATGCCAATCCTCACTGACAAGTTTCCTTTTGTGCAGAAATCTTCCAGAACGCTTGAGTGTTATGTACACAACCTGTTGAGGGTTACGGTCTACATCCCTGACCTGAGGAAAGACGTACTAGAGCTCATCATCAGCAAGATGCTTATGCTAGATGTTAGCGCACCGCGAAGTGAGATTGAAGAAGTGGAAAGTGGAGCT

Function

symbol description
rrn3 Predicted to enable RNA polymerase I core binding activity and RNA polymerase I general transcription initiation factor activity. Predicted to be involved in transcription initiation from RNA polymerase I promoter. Predicted to be active in nucleus. Is expressed in midbrain; segmental plate; and somite. Orthologous to several human genes including RRN3 (RRN3 homolog, RNA polymerase I transcription factor).

GO:

id name namespace
GO:0006361 transcription initiation from RNA polymerase I promoter biological_process
GO:0001181 RNA polymerase I general transcription initiation factor activity molecular_function
GO:0001042 RNA polymerase I core binding molecular_function

KEGG:

id description
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-080225-1 Predicted to enable RNA polymerase I core binding activity and RNA polymerase I general transcription initiation factor activity. Predicted to be involved in transcription initiation from RNA polymerase I promoter. Predicted to be active in nucleus. Is expressed in midbrain; segmental plate; and somite. Orthologous to several human genes including RRN3 (RRN3 homolog, RNA polymerase I transcription factor).

Ensembl:

ensembl_id ENSDARG00000102997

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051835 False 2356 mRNA 0.46 17 36589427 36602069
TCONS_00051836 False 2527 mRNA 0.46 18 36589477 36602500
TCONS_00051837 True 803 mRNA 0.43 10 36598526 36602379

Neighbor

gene id symbol gene type direction distance location
XLOC_026606 NA coding downstream 2291 36583100 ~ 36587136 (-)
XLOC_026605 ppl coding downstream 107441 36459790 ~ 36481986 (-)
XLOC_026604 glyr1 coding downstream 131262 36441306 ~ 36458165 (-)
XLOC_026603 rogdi coding downstream 148722 36427988 ~ 36440705 (-)
XLOC_026602 cog1 coding downstream 169030 36401105 ~ 36420397 (-)
XLOC_026608 si:dkeyp-72e1.6 coding upstream 2649 36605149 ~ 36606884 (-)
XLOC_026609 si:dkeyp-72e1.7 coding upstream 7585 36610085 ~ 36612877 (-)
XLOC_026610 myh11b coding upstream 65302 36667802 ~ 36711708 (-)
XLOC_026611 abcc6b.1 coding upstream 142018 36744518 ~ 36750068 (-)
XLOC_026612 FO744883.1 coding upstream 153533 36756033 ~ 36756149 (-)
XLOC_026600 NA non-coding downstream 265802 36320239 ~ 36323625 (-)
XLOC_026588 NA non-coding downstream 1014976 35565128 ~ 35574451 (-)
XLOC_026585 NA non-coding downstream 1641366 34947402 ~ 34948061 (-)
XLOC_026580 NA non-coding downstream 1947454 34641048 ~ 34641973 (-)
XLOC_026617 NA non-coding upstream 351125 36953625 ~ 36954088 (-)
XLOC_026618 CT573704.1 non-coding upstream 365371 36967871 ~ 36967993 (-)
XLOC_026619 NA non-coding upstream 366903 36969403 ~ 36972222 (-)
XLOC_026621 CT573704.2 non-coding upstream 473198 37075698 ~ 37075813 (-)

Expression


Co-expression Network