LOC110531539


Basic Information

Item Value
gene id LOC110531539
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 13988898 ~ 14002060 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053429.1
TAGCGGTCGAGGTGCAGAGGGAGGGGGATCGACAGGGAGGGGGATCGTCCGACGACAATCATAATAGTTCTCTATCGCTTGTTGTGAAACAAACATCAGCATGTTAAGGGACTTCTACGCATTTAACGGGCAATTGAAAACGGGGAACTATCCTAGCGTGGAGAAAGTCTCTATAGCGGTGGATAAACAGTCAATATGGTAAGCCCCTTCTGTGGACTGTAGCCTAGGTATGCAGCAACAGGCTGAACGAGTTTCCTGCCTGGCGTGCTGCCTGGCGTGCTTCCTGGCTACCTGAAACAACTTCTGATGgacaatgacccaacacacctccaggttggaCAATGACAccttaacaggacaatgacccaacacacctccaggttggaCAATGACACCttaacaagacaatgacccaacacacctccaattCCCAAAGAGCGTCTCCGATCAGGAAAGCTGATGTTGTCAGGTACGGTGGACTGGCTGGGACGAGCGGTTGTCGTCACTGAAACGCACCTCCCTGAGGACGGTTGCCGTGAGGATGAGATGGGCCGTGTCTTAGCCTGCTATCACAGGGTAACCCTGTAAATCACCTGTCACTATGTCAAACTCTGTCAGTACAATATTACAGTCTAGTCTGGGGGGACCCTTTATAGCGTAACACTCACAGCACTACTGGCAGTGTAAAAAACTCTGTGATACTTTATATAGTGGTTTTGTAGTAGCCTGGGTACCTtctgtttagctaacattccactc
>TU881139
GATCGTCCGACGACAATCATAATAGTTCTCTATCGCTTGTTGTGAAACAAACATCAGCATGTTAAGGGACTTCTACGCATTTAACGGGCAATTGAAAACGGGGAACTATCCTAGCGTGGAGAAAGTCTCTATAGCGGTGGATAAACAGTCAATATGgacaatgacccaacacacctccaggttggaCAATGACAccttaacaggacaatgacccaacacacctccaggttggaCAATGACACCttaacaagacaatgacccaacacacctccaattCCCAAAGAGCGTCTCCGATCAGGAAAGCTGATGTTGTCAGGTACGGTGGACTGGCTGGGACGAGCGGTTGTCGTCACTGAAACGCACCTCCCTGAGGACGGTTGCCGTGAGGATGAGATGGGCCGTGTCTTAGCCTGCTATCACAGGccCTTCTGTTGAAGAGAGAGGTTTTACAGTGATAGTGGACAGCCCTCCACTCTCTGCCTCGCGGCACTGAAACAATTCCGGGGAGAAGGAGTTAAATGTTGAAGAATGTTTAAACGTGTGTGTTTTGTTAATATGCGTATCATCATGTGTTTACATTGAAAGGGCATCCtatgatgag

Function

NR:

description
PREDICTED: puratrophin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053429.1 False 759 mRNA 0.50 3 13989782 14002060
TU881139 True 601 lncRNA 0.48 4 13988898 14002018

Neighbor

gene id symbol gene type direction distance location
LOC110531538 NA coding downstream 2843 13977459 ~ 13987582 (-)
LOC110531537 LOC106577970 coding downstream 19789 13946311 ~ 13969993 (-)
LOC110531536 NA coding downstream 46028 13917998 ~ 13943754 (-)
LOC110531533 LOC106577984 coding downstream 109681 13864720 ~ 13880101 (-)
LOC110531530 NA coding downstream 158261 13823424 ~ 13831521 (-)
LOC110531549 NA coding upstream 20590 14022650 ~ 14025846 (-)
LOC110532928 NA coding upstream 26859 14028919 ~ 14030784 (-)
LOC110531540 LOC106594400 coding upstream 31498 14033558 ~ 14039729 (-)
LOC110532929 LOC106578030 coding upstream 40224 14042284 ~ 14044513 (-)
LOC110531545 NA coding upstream 67975 14070035 ~ 14088275 (-)
G773405 NA non-coding downstream 52409 13936934 ~ 13937373 (-)
G773403 NA non-coding downstream 54281 13934972 ~ 13935501 (-)
G773395 NA non-coding downstream 73746 13915539 ~ 13916036 (-)
G773390 NA non-coding downstream 81830 13907746 ~ 13907952 (-)
G774158 NA non-coding upstream 72295 14074355 ~ 14074597 (-)
G774159 NA non-coding upstream 73905 14075965 ~ 14102816 (-)
G774181 NA non-coding upstream 112225 14114285 ~ 14123191 (-)
LOC110531554 LOC106578008 non-coding upstream 309400 14311455 ~ 14405052 (-)
G773168 NA other downstream 290454 13697179 ~ 13699328 (-)
G773163 NA other downstream 397694 13586326 ~ 13666937 (-)
G772877 LOC106577934 other downstream 993372 12994269 ~ 12996410 (-)
G771614 NA other downstream 2018428 11970904 ~ 11971354 (-)
LOC118966145 LOC106599223 other upstream 247341 14249401 ~ 14254157 (-)
G774427 LOC106578022 other upstream 721994 14724054 ~ 14724522 (-)
G774562 LOC106577809 other upstream 1235998 15238058 ~ 15253973 (-)
G774702 LOC106577875 other upstream 1350247 15352307 ~ 15361319 (-)
G774954 NA other upstream 1623142 15625202 ~ 15625920 (-)

Expression


Co-expression Network