XLOC_026609 (si:dkeyp-72e1.7)


Basic Information

Item Value
gene id XLOC_026609
gene name si:dkeyp-72e1.7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 36610085 ~ 36612877 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051839
CAGGAGCGCGCGGGCAGATTAATGTAGGATTTGAGCACTTGCCTATAAGTAACGGGAAACTGCTGATGGGTGTATGAACGCGCTCTGGAGCCTTTTAACTTAATTGCTAAATGGACTAATGAACCGTAATTCTTATGTTTGCCTCGCTCTGCCTTTTAAAGTCAAAGAAGATGGACTGAAGCAGAAGTACTCGATTGATCCGGCTTAATTTGGCAGCGCTTTGTAATGATCTTGTAATGTTTCTCAATGATGTTCACAATGAGCTGTCAAACTATTAATCCGTAATTTATCGTGCGTTTAAATATACTGGACAGAACATTCTGGAAACGCAAGTTTACCTCAATATTTGACTCGTCTCAAGCAAAAGGTCGTGTTTTATGAGCTTAGCCACGGCTGTCTGTCAATGACAGGTCACCTTTATGCCCATCGACGTCATTTACAAAGGTTAAAATAGCCTTCACCTATTTTGTGTGTTGTCGAACATGAGAAAGTCTTTTTTCAAGCGTTTAAAACGAGCAAAGATCCTGCCCTGGATCAGCAATGTGACTTTATACGGATGCCTGTTCGCCGGTGGGGATTTCGTCCATCAGTGCATCGCGCAAAGGGATGAGATGGATTGGAGACACACGAGGAACGTGGCGATCGTGGCTCTGAGTTTTCAGGGCAACTTCAACTACTTCTGGTTGCGAGCCTTAGAGAGTCGTTTCCCTGGAAGATCGGCCGGGATGGTGTTCCGTAAACTGGTTTTGGACCAAAGTTTTGCCTCACCTTTGGCGACCAGTGTCTTCTACACAGGTGTGAGTTTCTTAGAAGGCAAAGAGGACATATTTGAAGACTGGCGAGAAAAGTTCTTTAACACCTATAAGACTGGATTAATGTACTGGCCATTCATGCAGTTCCTGAATTTTGTTCTGATGCCTCTCTACCTGAGGACAGCGTTCATGGGCTGCTCAGCGTTCGTATGGGCCACGTTTTTGTGTTTCTCTCGACAGAGTGGAGATGGGACCGCAGCAGTGGCCTTAGCTTGGGTAATGGCCCCCAAGAAACGGCTTCTACATCGCAGTACAGACGAAGAGAAATAGACACATAGTGGCGTACATATACAACATTGTGCCTTTGCAAAAGGACAGTTAAGTCCCACAATGGTACTATATTGAGTCTGTTGGGTTTATGGATTGTTGCCACTTATGGTTGTATTAAGAATGATAACGGGTACgtgtttaatttatatttatgctGAAACAACACTATATAGTTGTAtgtgatttaatttattaatggaAGGACGATGAATTGTGACTTTATGTATTTTGCTGTGTGGTGCCCGAAGGGTCTTGTGTCATTGTGCCCCAGGTCATTAGATTGCTATTCAACCCAAATaccttactgatttatttttaaaatgattataaaagttCATGAAgtgtgttgtatttttttattttctcttttcagaaATGAAGGTGCATTCACTTGAAAGGTTTATATTAGGCTACATGCATTTACTCAAAAGTGATGCAGCTTTTAAAAGATTGGTttgtatgaaaaaatatatatatatattaaattcaactttgaaatctggactttactagaacttctatgttaagcagctttgacacaatcaacactgtaaaagtgctatagaaataaacacattgaattg
>TCONS_00052478
ACTTTTCAGACTGGATTAATGTACTGGCCATTCATGCAGTTCCTGAATTTTGTTCTGATGCCTCTCTACCTGAGGACAGCGTTCATGGGCTGCTCAGCGTTCGTATGGGCCACGTTTTTGTGTTTCTCTCGACAGAGTGGAGATGGGACCGCAGCAGTGGCCTTAGCTTGGGTAATGGCCCCCAAGAAACGGCTTCTACATCGCAGTACAGACGAAGAGAAATAGACACATAGTGGCGTACATATACAACATTGTGCCTTTGCAAAAGGACAGTTAAGTCCCACAATGGTACTATATTGAGTCTGTTGGGTTTATGGATTGTTGCCACTTATGGTTGTATTAAGAATGATAACGGGTACgtgtttaatttatatttatgctGAAACAACACTATATAGTTGTAtgtgatttaatttattaatggaAGGACGATGAATTGTGACTTTATGTATTTTGCTGTGTGGTGCCCGAAGGGTCTTGTGTCATTGTGCCCCAGGTCATTAGATTGCTATTCAACCCAAATaccttactgatttatttttaaaatgattataaaagtt

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000104457

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051839 False 1666 mRNA 0.41 4 36610085 36612877
TCONS_00052478 True 560 lncRNA 0.41 2 36610334 36611024

Neighbor

gene id symbol gene type direction distance location
XLOC_026608 si:dkeyp-72e1.6 coding downstream 3201 36605149 ~ 36606884 (-)
XLOC_026607 rrn3 coding downstream 7585 36589427 ~ 36602500 (-)
XLOC_026606 NA coding downstream 22949 36583100 ~ 36587136 (-)
XLOC_026605 ppl coding downstream 128099 36459790 ~ 36481986 (-)
XLOC_026604 glyr1 coding downstream 151920 36441306 ~ 36458165 (-)
XLOC_026610 myh11b coding upstream 54925 36667802 ~ 36711708 (-)
XLOC_026611 abcc6b.1 coding upstream 131641 36744518 ~ 36750068 (-)
XLOC_026612 FO744883.1 coding upstream 143156 36756033 ~ 36756149 (-)
XLOC_026613 abcc6b.1 coding upstream 143436 36756313 ~ 36764865 (-)
XLOC_026614 abcc6b.2 coding upstream 194765 36807642 ~ 36824190 (-)
XLOC_026600 NA non-coding downstream 286460 36320239 ~ 36323625 (-)
XLOC_026588 NA non-coding downstream 1035634 35565128 ~ 35574451 (-)
XLOC_026585 NA non-coding downstream 1662024 34947402 ~ 34948061 (-)
XLOC_026580 NA non-coding downstream 1968112 34641048 ~ 34641973 (-)
XLOC_026617 NA non-coding upstream 340748 36953625 ~ 36954088 (-)
XLOC_026618 CT573704.1 non-coding upstream 354994 36967871 ~ 36967993 (-)
XLOC_026619 NA non-coding upstream 356526 36969403 ~ 36972222 (-)
XLOC_026621 CT573704.2 non-coding upstream 462821 37075698 ~ 37075813 (-)

Expression


Co-expression Network