LOC110531562



Basic Information


Item Value
gene id LOC110531562
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 14488965 ~ 14490565 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>LOC110531562
tgttcctctGTAATAATACTAGCAACCTAGCAATTGTATAGAGTTGaatttagctagcccagataggttcccaatctcccaacctcatagcTAGCTACTAAGAAGCCATTtctagagtagctagcttgtctaactatactatattagctggcatgcctgctggcaaggttggtggactttagaaaagcaaggaATAACTAAAGGTACTAAATAATTCCTTTCAATCTTATGCCCAGATTTTAGAAGAGATGCAGAGAAGGGCATTTAGTTTCTTTATAAAAAGAACAACCAGTCTGGAGGGTACAGACAGTTTAAGAGTTATGCTTAAATATGCAGAAAAATTGACATTTTTGAAATAGAATTAAACATAACGAGTGTGGCTCTAGATTTCAGGAAAAATAAGATTCAGGTGTTTGAAACATGCTAAATTCTCCACCTTCCGAACTGACGGCCTAGCTCCCTCCAGAACTCCCTCAAGCCTCCTCATGTACTTTGTTCCCCCTCAGATGTTTGGGCTGCAAGacacctctgtctccctctgtctctgtctttgtctgtatgtcacactctcttctctcagtctctctgaccTGTTTATGCTTTTTCCTACTCCATTGTCATTATCAATCCAAACTGATCAGAGTCTCTGTgtcgtctgtctgtgtgagagtaATCAACAGTCCAAATGGCTCAACAAGGATGTCTGCTGAACCAGGACCAGCTCTGTTGTTCTTTCTGTCTGGATCTACTGAAGGAGCCGGTCACCATCCCCATGTGGACACAGTTACTGCTGGAGCTGTATTGAGGGATGCTGGGATCAAGATGATTGGAAGGGTGTCTTCAGCTGCCCCCAGTGCAGGAAAAACCTTCACCCAAAGGACAACTTTCATGAAAAATAACATGCTGGCTGAGGCGGTGGCGAAACTGAAGAAGACAGGACTCCAGGCTGCTCCCACTCCTGCTCTGTGCTAtgctggacctggagatgtggCCTGTGATTTCTGCACTGGGACCAGAAACCCCTCATGTCCTGTGATGTGTCTGGTGtcttactgtgagactcacctcCAATCTCACTATGAAATCCCTGGACTTAAGAAGCACAAGTTGGTCAAAGCCACCGCCCAACTACAGGAGCACATCTGTTCTCATCATGacaaactgctggaggtttaCTGTCGTACTGATCAACAGTATCTGTTATCTGTGTGTTATGGATGAACATAAAGACCATGATGCAGTGTCAGCTGCAGCAGAGAGAACTGAGAAACCGGTAAGACCAGAACAACTTGTTGGAGATGAACAAATCATTTAAGATAATATGGGAGGGCTGTTTGAATATGAGAGAACATATGCAGTTAGTTATTCACATGAAAAAGATTCTCCAAATGTATCACCATTTGCTGCTATCAAACCCCATCATCTCAGTTTGAGTCCAAAGTTCAGTCTGCGCTCTCTGATACATGTACTGTAAAGCAATAATCATTGAACTAACAACATAGATAATATGACTTTGTATGTTTGTAAGGATATTAGCATACTGTTGGCTGTGCCATATGGTGTCATATTATTTTGACATAAAACATTGACATTAGAAGAGT

Function


NR:

description
tripartite motif-containing protein 16-like

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
LOC110531562 True 1601 mRNA 0.43 1 14488965 14490565

Neighbor


gene id symbol gene type direction distance location
LOC110531561 LOC106578014 coding downstream 30228 14449856 ~ 14458737 (-)
LOC110531560 LOC106578013 coding downstream 42326 14442483 ~ 14446639 (-)
LOC110531554 LOC106578008 coding downstream 83913 14311455 ~ 14405052 (-)
LOC110531552 LOC106577828 coding downstream 177818 14294361 ~ 14311147 (-)
si:ch211-63p21.8 LOC106577827 coding downstream 201796 14282805 ~ 14287169 (-)
LOC110531564 LOC106578016 coding upstream 18475 14509040 ~ 14531504 (-)
LOC110531563 LOC106578017 coding upstream 41429 14531994 ~ 14626815 (-)
LOC110531585 LOC106608993 coding upstream 143360 14633925 ~ 14646754 (-)
LOC110531584 LOC106578021 coding upstream 197369 14687934 ~ 14692367 (-)
LOC110531581 LOC106578037 coding upstream 302111 14792676 ~ 14803212 (-)
G774244 NA non-coding downstream 990 14486882 ~ 14487975 (-)
LOC110532933 LOC106578015 non-coding downstream 2985 14484740 ~ 14508334 (-)
G774351 NA non-coding downstream 6715 14481941 ~ 14482250 (-)
G774348 NA non-coding downstream 12198 14476528 ~ 14476767 (-)
G774345 NA non-coding downstream 14970 14468638 ~ 14473995 (-)
G774383 NA non-coding upstream 106110 14596675 ~ 14599870 (-)
G774393 NA non-coding upstream 139968 14630533 ~ 14630845 (-)
G774416 NA non-coding upstream 209735 14700300 ~ 14700618 (-)
G774424 NA non-coding upstream 219459 14710024 ~ 14710230 (-)
LOC118966145 LOC106599223 other downstream 234808 14249401 ~ 14254157 (-)
LOC110531538 NA other downstream 501383 13977459 ~ 13987582 (-)
G773168 NA other downstream 789637 13697179 ~ 13699328 (-)
G773163 NA other downstream 896877 13586326 ~ 13666937 (-)
G772877 LOC106577934 other downstream 1492555 12994269 ~ 12996410 (-)
G774427 LOC106578022 other upstream 233489 14724054 ~ 14724522 (-)
G774562 LOC106577809 other upstream 747493 15238058 ~ 15253973 (-)
G774702 LOC106577875 other upstream 861742 15352307 ~ 15361319 (-)
G774954 NA other upstream 1134637 15625202 ~ 15625920 (-)
LOC110531603 groa other upstream 1291792 15781909 ~ 15787666 (-)

Expression



Co-expression Network