LOC110531585 (LOC106608993)


Basic Information

Item Value
gene id LOC110531585
gene name LOC106608993
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 14633925 ~ 14646754 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614854.2
CTTTCGAGATTCGCCTGGTTCTCGTTGCTGTCGTTTCTGTTGTTTCTGTAGAGAGCCATTGATCGGTAGAATTTCGAGATGGCATCTGACGGACCGCCGGGGACCGAACCTATCCCCTCCGACTTGGGGAGCTCTGTGGCGGCCCTCAATACATGGACCAACCCAGAGCTTCAGGCCAAGCTAGGCGAGCTAGGCGCACCCAACATGGGTCCCAGAGAGGAGATGCTGGACAGGCTTAAGGGATACATGATGCAGACTGGAATGATGCTCAGCAAACCCAACCTAGGGAGTGATGATAAACCTATGACCCCGCAGGTCAGCACCAACCGACCCTATAAGATGCCAGGAATCCCCCCCATGCCCCCGATGCCCATGCCCCCCATGCCTCCTGGTATGGGTATGCTCCAGGCGATGAGCATGATGGCAGGTGGACCCCCTCCACCAGGGATGCGTATGGGCATGGAGCCTCCAGGCATGCCCCCCAGCCTCTCCCAGGAGGACCAGCTGAAGATGGTGCAGCAGAGGGCTGCCATGATGATGCAGCACGAGGAGAGGGCCAAGCAGCAGgGGGAGTCCCGCGCTATGGAAGAGCACATGAAGGAGCAGGAACTTCTGGAGCAGCAGAAAAGGgCGGCGGTGATGCTGGAACATGAGAGGCAGCAGGAGCTGGCTAAGAGGCAGCATGGAGGACCAGggcccaggatgtctgacccagGGTCACGACCACCTGGCATGATGCCCCCCATGATGAGAGGTGTGAACCCTCCTGGAATGAACCCACCCCCTCCTGGAATGAATCCCCCCCCTCCTGGAATGAATCCTGGTGGAATGAACCCACCTCCTCCTGGAATGTCCATGATGCatacccagagacagagagttcCCCCTCCACCAGGAGAGGACGCCAGAGAGgtgtggcAGGGAGAGGATGTGGGTGTCGGTCCTAAGATCCCCCAGGCTCTGGAAAAGATTCTCCAACTGAAGGAGATCAGACAGGAGCAGCTCGGCGCCACCCCCACAGaagaggaggaggaggagagcccaGAGATGGAGATGAACAACTCCTCCGCTGCCGTCCTGTCTGAGACTGAAGAGGACGACGGTTCTCTCTCTAAGAAAGACAAAAATCGTAAGCGCAGGAACCGTaagaagaagaacaagaagagGCGTGAGCAGGAGAAGAGGGAGCAtgcagaggagaagaaagaggaggatggagagaaggagaaagagccTGAGGTGGAGATCGAGTATATTACAGAGGAACCGGAGATCTACGATCCTAACTTCATCTTCTTCAAGAGGATCTTTGAGGCCTTCAAGctGACTGATGACgtgaagaaggagaaggagaaggaaccGGAGAAGGAGCCGGCTCCTGCTCTAATGAGGAAGAAGGGATTTGAGGAGGAAAAGAAAGACAGCGACGACAGTGACGATgagaTCAGACCAGATGTTCCCAAGATGTCTAAGAAGAAGCTGAGGAGAATGAACAGACTAACTGTGGCTGAACTCAAACAGTTGGTGGCGCGTCCTGACGTGGTGGAGATGCACGACGTGACGGCGCAGGAACCCAAGCTGCTGGTTCACCTGAAGGCCACCAGGAACACGGTGCCCGTCCCCCGACACTGGTGCTTCAAGAGGAAGTACCTCCAGGGCAAGAGGGGTATCGAGAAGCCCCCTTTCGAGCTGCCAGAGTTCATCAAGAGGACAGGCATCCAGGAGATGAGAGAAGCTTTACAGGAGAAGGAGGATGCCAAGACCATGAAGACCAAGATGAGGGAGAAGGTGCGTCCCAAGATGGGCAAGATCGACATCGACTACCAGAAGCTCCACGACGCCTTCTTCAAGTGGCAGATGAAGCCTAAACTCTCCATCCACGGTGACCTCTACTACGAGGGGAAGGAGTTTGAGACGAGGCTGAAGGAGAAGAAGCCAGGCGACCTGTCAGATGAGCTGCGTATTGCTCTGGGCATGCCCGTTGGACCGAACTCCCACAAGGTTCCCCCTCCCTGGCTGATCGCCATGCAGAGATACGGCCCCCCTCCCTCCTACCCCAACCTCAAGATCCCCGGGCTCAACTCCCCTATCCCTGAGagctgTTCGTTCGGTTACCATGCTGGTGGTTGGGGGAAGCCTCCTGTAGATGAGACAGGAAAGCCTCTGTACGGTGATGTGTTCGGGACCAACGCCGTCGACTTCCAGgctaaggcggaggaggaggaggtggatcGTACGCCGTGGGGAGAGCTGGAGCCTTCAGACGAGGAGTCTtccgaggaagaggaggaggatgagagtgaTGAGGAGAAGCCAGACGAAACCGGCTTCTTCACACCAGCAGACAGtggtcTGATCACTCCCGGAGGCTTCTCGTCGGTACCTGCTGGTATGGAGACTCCAGAGCTCATTGAGCTGAGGAAGAAGAAGATCGAGGAGGCTATGGACGGgaatgAGACTCCTCAGCTGTTCACGGTGCTCCCAGAGAGGAGAACGGGCTCTGGAGGAGCAGCCATGATGGCATCCACACACATCTACGACGTATCAGGGgccATGGCGGGTCGTAAGGCGGGCGGAGGCCAGGAGTTCCAAGGGGTAGAAGTGGCTCTGGCCCCAGAGGAGCTGGAGCTGGACCCCATGGCCATGACTCAGAAGTACGAGGAGCACGTCAGGAACCAGGAGGCCCAGGTGGAGAAGGAGGACTTCAGCGACATGGTGGCCGAGCACGCCGCCAAACAGAAGCAAAAGAAGAGGAAGGCCCAGCCTCAAGACACACGAGGAGGTGCCAAGAAATACAAAGAGTTCAAGTTTTAGACCACCAATAACGCACCAGGAGGAAATGGGAAGAGAGGACAGGCCGAACAAGACGAGCTCAGATTTGAACCCACACAAAACCATCCGTTAATAAAGTTGTCTTTTCCTCTTAATGACAATGATAATGCGTATCTGGCAGGActggggtcaattccattacAATTCCAGTCCATTTTGGAAaataaaccaaattccaattttcataattgaagagaattggaatgtTTGTACTTctggaattgaaattgaattgagcccaaccctggtgTTCTGGAGAACCGTTGCCAGGTCTCCACTGTAGGCAGAATTTATATAACCCATCTATTCTGTCCTGTGTGACTACTTTCCATGTAGCTGTGCTTTTCTCTTTTTGTAAATAAAAGACTCCATGTCAATCCAATCTATGGATCCAAATGGTTAA
>XM_021614855.2
ATAGTGAAATTTCCCATCGTGCCTTTCGAGATTCGCCTGGTTCTCGTTGCTGTCGTTTCTGTTGTTTCTGTAGAGAGCCATTGATCGGTAGAATTTCGAGATGGCATCTGACGGACCGCCGGGGACCGAACCTATCCCCTCCGACTTGGGGAGCTCTGTGGCGGCCCTCAATACATGGACCAACCCAGAGCTTCAGGCCAAGCTAGGCGAGCTAGGCGCACCCAACATGGGTCCCAGAGAGGAGATGCTGGACAGGCTTAAGGGATACATGATGCAGACTGGAATGATGCTCAGCAAACCCAACCTAGGGAGTGATGATAAACCTATGACCCCGCAGATGCCAGGAATCCCCCCCATGCCCCCGATGCCCATGCCCCCCATGCCTCCTGGTATGGGTATGCTCCAGGCGATGAGCATGATGGCAGGTGGACCCCCTCCACCAGGGATGCGTATGGGCATGGAGCCTCCAGGCATGCCCCCCAGCCTCTCCCAGGAGGACCAGCTGAAGATGGTGCAGCAGAGGGCTGCCATGATGATGCAGCACGAGGAGAGGGCCAAGCAGCAGgGGGAGTCCCGCGCTATGGAAGAGCACATGAAGGAGCAGGAACTTCTGGAGCAGCAGAAAAGGgCGGCGGTGATGCTGGAACATGAGAGGCAGCAGGAGCTGGCTAAGAGGCAGCATGGAGGACCAGggcccaggatgtctgacccagGGTCACGACCACCTGGCATGATGCCCCCCATGATGAGAGGTGTGAACCCTCCTGGAATGAACCCACCCCCTCCTGGAATGAATCCCCCCCCTCCTGGAATGAATCCTGGTGGAATGAACCCACCTCCTCCTGGAATGTCCATGATGCatacccagagacagagagttcCCCCTCCACCAGGAGAGGACGCCAGAGAGgtgtggcAGGGAGAGGATGTGGGTGTCGGTCCTAAGATCCCCCAGGCTCTGGAAAAGATTCTCCAACTGAAGGAGATCAGACAGGAGCAGCTCGGCGCCACCCCCACAGaagaggaggaggaggagagcccaGAGATGGAGATGAACAACTCCTCCGCTGCCGTCCTGTCTGAGACTGAAGAGGACGACGGTTCTCTCTCTAAGAAAGACAAAAATCGTAAGCGCAGGAACCGTaagaagaagaacaagaagagGCGTGAGCAGGAGAAGAGGGAGCAtgcagaggagaagaaagaggaggatggagagaaggagaaagagccTGAGGTGGAGATCGAGTATATTACAGAGGAACCGGAGATCTACGATCCTAACTTCATCTTCTTCAAGAGGATCTTTGAGGCCTTCAAGctGACTGATGACgtgaagaaggagaaggagaaggaaccGGAGAAGGAGCCGGCTCCTGCTCTAATGAGGAAGAAGGGATTTGAGGAGGAAAAGAAAGACAGCGACGACAGTGACGATgagaTCAGACCAGATGTTCCCAAGATGTCTAAGAAGAAGCTGAGGAGAATGAACAGACTAACTGTGGCTGAACTCAAACAGTTGGTGGCGCGTCCTGACGTGGTGGAGATGCACGACGTGACGGCGCAGGAACCCAAGCTGCTGGTTCACCTGAAGGCCACCAGGAACACGGTGCCCGTCCCCCGACACTGGTGCTTCAAGAGGAAGTACCTCCAGGGCAAGAGGGGTATCGAGAAGCCCCCTTTCGAGCTGCCAGAGTTCATCAAGAGGACAGGCATCCAGGAGATGAGAGAAGCTTTACAGGAGAAGGAGGATGCCAAGACCATGAAGACCAAGATGAGGGAGAAGGTGCGTCCCAAGATGGGCAAGATCGACATCGACTACCAGAAGCTCCACGACGCCTTCTTCAAGTGGCAGATGAAGCCTAAACTCTCCATCCACGGTGACCTCTACTACGAGGGGAAGGAGTTTGAGACGAGGCTGAAGGAGAAGAAGCCAGGCGACCTGTCAGATGAGCTGCGTATTGCTCTGGGCATGCCCGTTGGACCGAACTCCCACAAGGTTCCCCCTCCCTGGCTGATCGCCATGCAGAGATACGGCCCCCCTCCCTCCTACCCCAACCTCAAGATCCCCGGGCTCAACTCCCCTATCCCTGAGagctgTTCGTTCGGTTACCATGCTGGTGGTTGGGGGAAGCCTCCTGTAGATGAGACAGGAAAGCCTCTGTACGGTGATGTGTTCGGGACCAACGCCGTCGACTTCCAGgctaaggcggaggaggaggaggtggatcGTACGCCGTGGGGAGAGCTGGAGCCTTCAGACGAGGAGTCTtccgaggaagaggaggaggatgagagtgaTGAGGAGAAGCCAGACGAAACCGGCTTCTTCACACCAGCAGACAGtggtcTGATCACTCCCGGAGGCTTCTCGTCGGTACCTGCTGGTATGGAGACTCCAGAGCTCATTGAGCTGAGGAAGAAGAAGATCGAGGAGGCTATGGACGGgaatgAGACTCCTCAGCTGTTCACGGTGCTCCCAGAGAGGAGAACGGGCTCTGGAGGAGCAGCCATGATGGCATCCACACACATCTACGACGTATCAGGGgccATGGCGGGTCGTAAGGCGGGCGGAGGCCAGGAGTTCCAAGGGGTAGAAGTGGCTCTGGCCCCAGAGGAGCTGGAGCTGGACCCCATGGCCATGACTCAGAAGTACGAGGAGCACGTCAGGAACCAGGAGGCCCAGGTGGAGAAGGAGGACTTCAGCGACATGGTGGCCGAGCACGCCGCCAAACAGAAGCAAAAGAAGAGGAAGGCCCAGCCTCAAGACACACGAGGAGGTGCCAAGAAATACAAAGAGTTCAAGTTTTAGACCACCAATAACGCACCAGGAGGAAATGGGAAGAGAGGACAGGCCGAACAAGACGAGCTCAGATTTGAACCCACACAAAACCATCCGTTAATAAAGTTGTCTTTTCCTCTTAATGACAATGATAATGCGTATCTGGCAGGActggggtcaattccattacAATTCCAGTCCATTTTGGAAaataaaccaaattccaattttcataattgaagagaattggaatgtTTGTACTTctggaattgaaattgaattgagcccaaccctggtgTTCTGGAGAACCGTTGCCAGGTCTCCACTGTAGGCAGAATTTATATAACCCATCTATTCTGTCCTGTGTGACTACTTTCCATGTAGCTGTGCTTTTCTCTTTTTGTAAATAAAAGACTCCATGTCAA

Function

NR:

description
splicing factor 3B subunit 2-like isoform X2

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12829 SF3B2, SAP145, CUS1; splicing factor 3B subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614854.2 False 3235 mRNA 0.55 22 14633925 14646732
XM_021614855.2 True 3207 mRNA 0.55 22 14633951 14646754

Neighbor

gene id symbol gene type direction distance location
LOC110531563 LOC106578017 coding downstream 7110 14531994 ~ 14626815 (-)
LOC110531564 LOC106578016 coding downstream 102421 14509040 ~ 14531504 (-)
LOC110532933 LOC106578015 coding downstream 125591 14484740 ~ 14508334 (-)
LOC110531562 NA coding downstream 143360 14488965 ~ 14490565 (-)
LOC110531561 LOC106578014 coding downstream 175188 14449856 ~ 14458737 (-)
LOC110531584 LOC106578021 coding upstream 41180 14687934 ~ 14692367 (-)
LOC110531581 LOC106578037 coding upstream 145922 14792676 ~ 14803212 (-)
LOC118966000 LOC106578026 coding upstream 371277 15018031 ~ 15035380 (-)
LOC110531572 LOC106577851 coding upstream 617412 15264166 ~ 15268722 (-)
LOC110531571 LOC106577852 coding upstream 623436 15270190 ~ 15281871 (-)
G774393 NA non-coding downstream 3080 14630533 ~ 14630845 (-)
G774383 NA non-coding downstream 34055 14596675 ~ 14599870 (-)
G774244 NA non-coding downstream 145950 14486882 ~ 14487975 (-)
G774416 NA non-coding upstream 53546 14700300 ~ 14700618 (-)
G774424 NA non-coding upstream 63270 14710024 ~ 14710230 (-)
G774419 NA non-coding upstream 69751 14716505 ~ 14718146 (-)
G774428 NA non-coding upstream 78177 14724931 ~ 14727701 (-)
G774430 NA non-coding upstream 84114 14730868 ~ 14735439 (-)
LOC118966145 LOC106599223 other downstream 379768 14249401 ~ 14254157 (-)
LOC110531538 NA other downstream 646343 13977459 ~ 13987582 (-)
G773168 NA other downstream 934597 13697179 ~ 13699328 (-)
G773163 NA other downstream 1041837 13586326 ~ 13666937 (-)
G772877 LOC106577934 other downstream 1637515 12994269 ~ 12996410 (-)
G774427 LOC106578022 other upstream 77300 14724054 ~ 14724522 (-)
G774562 LOC106577809 other upstream 591304 15238058 ~ 15253973 (-)
G774702 LOC106577875 other upstream 705553 15352307 ~ 15361319 (-)
G774954 NA other upstream 978448 15625202 ~ 15625920 (-)
LOC110531603 groa other upstream 1135603 15781909 ~ 15787666 (-)

Expression


Co-expression Network