XLOC_026611 (abcc6b.1)


Basic Information

Item Value
gene id XLOC_026611
gene name abcc6b.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 36744518 ~ 36750068 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051844
CATGCTAAGCACAGTTTTGTTGGGCTTCATACATGTTCCaatgacaataaaatatattctatTCTCTTTTCAGATTTTGAAAGTGTTGTTATTAACAATGGCACATTCAGCTGGTCTAAAGACAGCACACCATGTCTTAGAAGGATCAATGTCAAAGTTCAGCGAGGTTCACTGGTGGCTGTGGTTGGTCATGTGGGCAGTGGAAAATCCTCTCTCTTGTCTGCAATGCTTGGAGAAATGGAAAAGAAAAGCGGCCACATCAAAATCACAGGCTCTGTGGCTTATGTTCCTCAGCAAGCATGGATCCAGAATGCCACTCTTAAAGACAACATTTTGTTTGGATGTGAGAAGAAAGACAGCTTGTACCAGAAAGTACTGGAAGCCTGTGCCCTCCTACCAGACTTGGAGATCCTTCCTGCAAGAGACGCCACAGAGATTGGAGAGAAGGGGTTAAATCTGTCAGGAGGTCAAAAACAGAGAGTAAGTCTGGCACGAGCAGTATACAGGAAGGCTGATATCTATCTGTTGGATGATCCCTTGTCAGCGGTGGATGCACATGTGGGTCAACACATCTTTGAAAAGGTCATTGGACCAAACGGGATTCTTAAAAATAagACTCGTGTTCTGGTGACTCATGGACTCAGCTTCCTACCCAAAGCAGACCTGATCCTGGTGATTGTGGATGGAGAAATCACAGAGATGGGCTCTTATGTCGAGCTTCTGAGCAGAAAGAATGCCTTTGCAGAGTTTGTTAAGGCTTTTTCTGTTAGTGAACGCAAGGAAAGTGCCACCCACAAAGGGACCAGGAAATCAGTATCTCGCCTAAGCATGACAGACTTCTCTATTGACCTCTCTCAAGAGCAACTCATCAGTGGAGACATGGGAAGTGCAAGCATACAAACAATGGAGACCATATCTGACACAGAACAGGAGACGGACAATGAAGAAGTTGGCAGACTCACCCAAGCTGACAAAGCACATACAGGCCGGGTGAAACTGGAGATGTATGTGGAGTACTTCAGGACCATAAGCTTGGCACTCATCATCCCCATCATCTTCCTCTATGCGTTCCAGCAAGCTGCTTCACTGGCCTACAACTACTGGCTCAGTTTGTGGGCAGATGACCCGGTTATAAATGGAACACAGGTTAACACTGATCTGAAGCTTGGTGTATATGGAGCTCTTGGCTTTGCTCAAGGAATTGCAATTTTCGGGACTACTGTAGCAATATCCCTTGGAGGAATAATTGCATCCCGGCAACTTCATCTGGACCTTCTGAACAACGTACTTCACTCTCCCATGTCATTCTTTGAAAGTACACCTAGTGGTAACCTTCTCAATCGTTTCTCAAAAGAGATAGACGCCATTGATTGCATGATTCCTGATGGTCTAAAGATGATGCTGGGCTATGTGTTCAAACTTCTGGAGGTTTGCATTATCGTGCTGATGGCAACTCCATTTGCAGGAGTGATCATACTGCCGTTGGCTCTTCTCTATGCTTTTATTCAGAGTTTCTATGTTGCCACATCCTGCCAGTTGCGAAGACTAGAGTCAGTGAGTCGTTCACCCATTTATACTCATTTCAATGAGACAGTCCAAGGAGCCAGTGTGATCCGTGCCTTTGGTGAACAGCCTAGATTCATTCTTCAGGCTAACTGTCGAGTGGACCTCAATCAAACGTCCTACTTCCCAAGATTTGTGGCTACAAGGTGGCTGGCAGTAAATCTAGAGTTTCTGGGTAACTTGCTGGTCCTTGCTGCAGCTATCCTCTCTGTTATGGGAAGGGCAACTTTAAGCCCTGGAATCGTGGGGCTAGCTGTGTCTCACTCTCTCCAGGTCACCGGGATCCTAAGCTGGATTGTGCGGTCATGGACTGATGTAGAAAACAACATTGTGTCTGTTGAGCGAGTGAAAGAATATGCTGAAACGGCAAAAGAGGCACCATGGACAATCGAGGACAGTCCACTCCCATCTGACTGGCCCAGATGCGGATCCATTGGATTCCAGGCATATGGACTTCAGTATCGCAAGGGTCTTGACTGGGCCTTGAAAGAAATTTCCCTCAGTGTCAATGAGagagaaaaaGTAGGAATTGTGGGAAGAACAGGAGCTGGAAAATCATCTCTGGCTCTTGGAATCTTTCGTATCCTTGAGGCAGCAAAAGGAAAGATCTTTATAGATGGGATAAACATAGCAGAGATTGGACTGCATGAACTGAGGTCTCGTATCACTATCATCCCACAGGATCCAGTGCTGTTCTCAGGTTCGTTACGTATAAATCTGGATCCCTTTGATCGCTACACTGATGAAGAGGTTTGGAGATCTCTAGAACTTGCACATCTCAAGACCTTTGTGTCTGACTTGCCTGACAAACTCAACCATGAGTGTTCAGAGGGTGGAGAAAATCTCAGTTTGGGTCAGCGGCAGCTGGTTTGCCTGGCTCGAGCTCTCCTCAGAAAGACCAAGATTCTGGTTTTGGATGAAGCCACTGCAGCAGTGGATCTAGAGACAGACAATCTGATACAGTCCACCATCCGAACCCAGTTTGAGGACTGCACAGTTCTGACCATTGCACACCGCCTCAACACCATCATGGACTACACAAGGGTAATTGTGATGGACAGAGGAAAAATCACGGAGGTAGACTCTCCATCTAACCTGATTTCTCAGCATGGACAATTCTATCGAATGTGTCGAGAGGCTGGGCTGGTGTGAACCTTCACCATCAGTGACAAAATCATATCTTCACTTAGGAGAGACAATGAAAATATTGGTGTCGAACAACCAATATCTAAAGGGCATCTTTAGACGACTTCTTAAAAGAAGCACAGAGCTCAGGATGAAGAGGTTTCGGATGCTATAGCATGTGTCCACATTTTCTCTAGTAGTAGAAGTAGTGTGCTTTAGCGTTCTCCTGCTGATACTTTCACTGATGTCTGAGGtgctaaagcaggggtgcccaagctCAGTcctgagggccagtgtcctgcagattataCCACCATCTTGCCAcaacacacctgcacagatgATTCTAGAAATCTTAGTAACAGCTTAATTAgcaagcccaggtgtgtctgattgggttgaaactaaactttgcaggacaccggccctcaaggtaCGAGTTGGGCTCCCATTTGCTAAAGAAACAGAAAGTCAATAATCTCATCTCATAATATGAAGACTTGAGTGACTCTGAGTAACTTACCGTAAAGGTCTTCAGATGGTCAGGTATTTGTGGTGGTCATTATTTATCATCTCTAATTTATGTC
>TCONS_00051845
CTGGCTCTTGGAATCTTTCGTATCCTTGAGGCAGCAAAAGGAAAGATCTTTATAGATGGGATAAACATAGCAGAGATTGGACTGCATGAACTGAGGTCTCGTATCACTATCATCCCACAGGATCCAGTGCTGTTCTCAGGTTCGTTACGTATAAATCTGGATCCCTTTGATCGCTACACTGATGAAGAGGTTTGGAGATCTCTAGAACTTGCACATCTCAAGACCTTTGTGTCTGACTTGCCTGACAAACTCAACCATGAGTGTTCAGAGGGTGGAGAAAATCTCAGTTTGGGTCAGCGGCAGCTGGTTTGCCTGGCTCGAGCTCTCCTCAGAAAGACCAAGATTCTGGTTTTGGATGAAGCCACTGCAGCAGTGGATCTAGAGACAGACAATCTGATACAGTCCACCATCCGAACCCAGTTTGAGGACTGCACAGTTCTGACCATTGCACACCGCCTCAACACCATCATGGACTACACAAGGGTAATTGTGATGGACAGAGGAAAAATCACGGAGGTAGACTCTCCATCTAACCTGATTTCTCAGCATGGACAATTCTATCGAATGTGTCGAGAGGCTGGGCTGGTGTGA

Function

symbol description
abcc6b.1 Predicted to enable ATPase-coupled transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in EVL; dermal bone; inner ear; opercular flap; and pronephric proximal straight tubule. Human ortholog(s) of this gene implicated in arterial calcification of infancy; coronary artery disease; and pseudoxanthoma elasticum. Orthologous to human ABCC6 (ATP binding cassette subfamily C member 6).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050517-19 Predicted to enable ATPase-coupled transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in EVL; dermal bone; inner ear; opercular flap; and pronephric proximal straight tubule. Human ortholog(s) of this gene implicated in arterial calcification of infancy; coronary artery disease; and pseudoxanthoma elasticum. Orthologous to human ABCC6 (ATP binding cassette subfamily C member 6).

Ensembl:

ensembl_id ENSDARG00000105403

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051844 False 3275 mRNA 0.46 17 36744518 36750068
TCONS_00051845 True 591 mRNA 0.47 4 36745078 36745935

Neighbor

gene id symbol gene type direction distance location
XLOC_026610 myh11b coding downstream 32810 36667802 ~ 36711708 (-)
XLOC_026609 si:dkeyp-72e1.7 coding downstream 131641 36610085 ~ 36612877 (-)
XLOC_026608 si:dkeyp-72e1.6 coding downstream 137634 36605149 ~ 36606884 (-)
XLOC_026607 rrn3 coding downstream 142018 36589427 ~ 36602500 (-)
XLOC_026606 NA coding downstream 157382 36583100 ~ 36587136 (-)
XLOC_026612 FO744883.1 coding upstream 5965 36756033 ~ 36756149 (-)
XLOC_026613 abcc6b.1 coding upstream 6245 36756313 ~ 36764865 (-)
XLOC_026614 abcc6b.2 coding upstream 57574 36807642 ~ 36824190 (-)
XLOC_026615 ramp2 coding upstream 86643 36836711 ~ 36846496 (-)
XLOC_026616 cntnap1 coding upstream 153971 36904039 ~ 36944749 (-)
XLOC_026600 NA non-coding downstream 420893 36320239 ~ 36323625 (-)
XLOC_026588 NA non-coding downstream 1170067 35565128 ~ 35574451 (-)
XLOC_026585 NA non-coding downstream 1796457 34947402 ~ 34948061 (-)
XLOC_026580 NA non-coding downstream 2102545 34641048 ~ 34641973 (-)
XLOC_026617 NA non-coding upstream 203557 36953625 ~ 36954088 (-)
XLOC_026618 CT573704.1 non-coding upstream 217803 36967871 ~ 36967993 (-)
XLOC_026619 NA non-coding upstream 219335 36969403 ~ 36972222 (-)
XLOC_026621 CT573704.2 non-coding upstream 325630 37075698 ~ 37075813 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G199176 NA non-coding CI01000046 null 6869188 ~ 6869963 (-)