LOC110531577 (LOC106578038)


Basic Information

Item Value
gene id LOC110531577
gene name LOC106578038
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 14864590 ~ 14889244 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987395.1
gatagggaggacgTACAGCCAGAGGAAACAGACATACAACTCCTAACAGAGATGTCTGGtggtcccctctcctccttctccaaacaggGAATACtcctactctctatcctccactATGGTGTGGGTATTTCTCTGTTCAACAAAGCAGTGGGGGACTCAGTGGAGCTGCCCTCAGGCTTAGAAAGGGAAGGTATCAAGTCAATGGAGTGGAAGTATAAAAAAATGGTCATTGCAGAATTTGATGGGAACATTTCCTTACCAAGATCACAGTTTAAGGGGAGACTAGAGATGAACGACAGTAACTTCCGTTTAACAATCCAAGAACTGTCACTGCAAGACTCAGGGGAATTTCTAGTTTCTGCCGCATCAAACAAAGGAGGACAGATTCCAACCAAGACCATCCATCTTCAAGTCCATGagcctaTATCCAAGGTGGTGATCCAGAAGGAGATCACGCTATTGGCCAACCAGTCCTGTTCAGTGTGGCTGCTGTGCAACGTGTCAGTCGGCTCCAAACTCTCCTACacctgggagagagggaatgagacgTACAGGGACGACGAGCAGATACACTTCTCTCTGTCACCTGCAGACGGAGACATCAGTGTAACCTGCACTGCCTCCAACTCAGTCAGTGAGAAATCTGCCTCAGCAACAGTAAAGTGTAGTAATGACACAACCACCCCAGAGTATGATACATGGATGAAGTGGTATAGGATCTACATCGTTGTACCAGTAGGCGTCGCTGTGTTGCTGATCCTCACTGTAGCTGTGGCAGTGTATTACTGCAGGGGGTGCTTTAACATGGCAGCTCTGACTGACGACACAAGAATGAAAGATACAAGAACAAACAGTCAGGTAATGTCCATCTATGAGAACGTAGATGATCTGGCTGTCCCAAGACTGAACAAGTCGCAGACTCTATATGACAAGATCACATTTGGACGCCAGCCAGAAACCCCCTGTTCTTCCTACCAGGAAGTACTGTGAGCTGAACAGGATGTGGTCATAAGCTGGGCTTCTATAGATATAGAACCCTCTGCATCTTCTGCATCCTACATGTGTACCTTCTGTAATAGATGTTACAGTTTCATTTCATCACAACctgcacatttctgtttttattttcttaCTTGTTCAGAACTGCAACCTTCATCTGTTCATGGTCATTGTGTGGTACAACTTGTTATTTTCAAGATAGTCAGTGTTACATAACTTTTTGTTAGCTTCTATTGCATTCTATTGTTGCATGAACTGTTTATAATTGTGTATTAACGACTAATGGCAATTCAAAATGATATTCTTAAAGATTACTTGTGTTTCTGTGGGACTACAAGAGTTGAAAACaagttatttgtatttctatttaTTGTAGTTTAGATGTGTCTATTGTACAGTAAAATGTTTTACATTCCACAGACATGCTTTGTAGAAATCACATAGGCCACATTCACATCAATTCATCATATACTCACTAACTatcttttgttgttgtgtgaaaTCAGACAATGAATAGACCTTATTAATACAATAATACCATCTTTACATATTGAGCAAAGGGAGAGAACATCCTAATAAATATAACGATTTGTAGCAATCATAATGCATAGATCATATAATGATTCTGTTAAGATAATTATGTGttcaatgttca

Function

NR:

description
SLAM family member 8-like isoform X1

GO: NA

KEGG:

id description
K16853 SLAMF8, CD353; SLAM family member 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987395.1 True 1654 mRNA 0.41 8 14864590 14889244

Neighbor

gene id symbol gene type direction distance location
LOC110532999 LOC106578032 coding upstream 12105 14849640 ~ 14852485 (+)
LOC110531580 LOC106578024 coding upstream 39346 14816295 ~ 14825244 (+)
LOC110531582 LOC106578023 coding upstream 101087 14756863 ~ 14763503 (+)
LOC110532934 LOC106578022 coding upstream 124145 14716449 ~ 14740445 (+)
LOC110531583 LOC106578020 coding upstream 176859 14649303 ~ 14687731 (+)
LOC118966162 LOC106578024 coding downstream 15763 14905007 ~ 14912257 (+)
LOC118965998 NA coding downstream 58011 14947255 ~ 14949071 (+)
LOC110531575 NA coding downstream 60193 14949437 ~ 14972051 (+)
LOC118936439 LOC106596013 coding downstream 196437 15085681 ~ 15185946 (+)
LOC118965999 LOC106596013 coding downstream 328353 15217597 ~ 15248137 (+)
G773811 LOC106578037 non-coding upstream 63463 14795963 ~ 14801127 (+)
G773761 NA non-coding upstream 131138 14728870 ~ 14733452 (+)
G773752 NA non-coding upstream 164078 14700214 ~ 14700512 (+)
G773739 NA non-coding upstream 206588 14656708 ~ 14658002 (+)
G773871 NA non-coding downstream 29974 14919218 ~ 14920221 (+)
G773917 NA non-coding downstream 214613 15103857 ~ 15111275 (+)
G773918 NA non-coding downstream 218337 15107581 ~ 15108957 (+)
G773940 NA non-coding downstream 269555 15158799 ~ 15219494 (+)
G773808 NA non-coding downstream 275192 15164436 ~ 15236467 (+)
G773601 NA other upstream 480424 14382670 ~ 14384166 (+)
G773583 NA other upstream 538757 14306630 ~ 14328474 (+)
G773562 LOC106577828 other upstream 549340 14311468 ~ 14315250 (+)
G773535 LOC106577997 other upstream 647738 14213449 ~ 14216852 (+)
G773437 NA other upstream 836062 14024873 ~ 14028528 (+)
G773983 LOC106577853 other downstream 409214 15291949 ~ 15299214 (+)
G774021 NA other downstream 485980 15375224 ~ 15377188 (+)
G774065 NA other downstream 576116 15465360 ~ 15465624 (+)
LOC110531590 LOC106577858 other downstream 582263 15471215 ~ 15505643 (+)
G775142 NA other downstream 976845 15866089 ~ 15866708 (+)

Expression


Co-expression Network