LOC118966162 (LOC106578024)


Basic Information

Item Value
gene id LOC118966162
gene name LOC106578024
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 14905007 ~ 14912257 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989258.1
ATGTACGATGACAATCCTCACATGGTGTTAGGTGTAACGGCTGCATCGGACAGGTCACTGGCCTTTTgGACCTGGGCTGATGTCCCTCCAATAGACCAGTATGGCTTGAAGGGAGGTTCGGTATGTCTGGCTGTTGCAGAACACCCTGATCAACTCAAAGGAATTACATGGAAGTTCCGAAAGGATGTAATAGTGGATGATGAAGACATATCTCCTAAATACAAGAAGAAGGTAGATTCTAACCCAGTGAACCACACTCTGTGCATTAAAAatctgacagacacagacagtggaatTTACATTGCAAATGCAAAGAAAAACGATTGGACAGATTCAACGTCTTCATACAAACTTAAGGTGTTGGAAGCTGTTCCCATTCCAGCCATGCAGGTGACATACTACAACTCAAGTACAGGACTTTGTAACATCACAGTGAATTGTTCAGGCTGGATGTTTTCTGTCTGTGATGGAGGTCAGTGCCCACTGTACCAGGATTCTCTGTCAGTCTCTGAGGTCAACATCACTGTTTCCAGTGGTAATGGATTCATCCAGTGTATCGTCAACAATCATGTCAGCACAGAGACCAAATCACAACGCATGAATGACATATGTATTGTTGAGAAGAAGGGGATCGCTGCAGCATCACTAGTTGGCATCATTGTGGGCATTGTTACTGGTGGATTATTCTTAGTTGGTGTAGGATGCATCATATCAACCAGAAGATGGCGATCCCCTAAAGAAATACTGCTTCTGAAGGCCGTTGTTCCAGAAGTTGACAACCCAGTGAGCGCTATACCAGGAAGACCAGAACCCCAGAACACCCCTGGATCTGAGGTGACATCTATCTACATTACTGCAGGGAGACCAGGAGCAGTACCAGCATCagcagaaagagaagaggggcATCCAGGGGACAAGGAGTACACTTCACCAGAAGAGAGGATAGAACCACAGTCCCCCCCACAGGCAGAGACATTCTACAGCACCCTACAGATACCAGCTGCAGCACAGCACCACCCAGTGGGCAAAGGAAATCATCTAAAGAAACCAGACACAGTGTACTGCACAATAGGatattacccctccatccttctcgGAGACCCACGGATGTTGCTTTGATTAAGATTGTACCCATAGACTCAGGTACCGAATGCAAACACAGGGGAAATTATGAAGGAGAGAATCATGATAATGGGTTTTTAACATTTCCGTCTAATTTCATCCATATTTAAAGTGGCAATCTGCAATTCCTACGTACTTTTAATTGAATTGTATATAACTATTAATCCATGCAGAATACAACATATGCTTGTTTAATTCCATTGTTTGttaaaactgtatttgtaaaaCAATTGGTGGCAGGGTACCCGCGTTGTTATTATTTAgactgcagatttcccctttagcGATAGAAAGTATGTAAAACAGTCTTATTTTCTGTAAACGAAAATGGAGACATGCAGATGAATACAGTAGCGCTATACATGCTTTAAAAAAGTGTTTATACACAAAGCAGCGGTTTGAAAATGGGAAACCCAtcctttcaatcaatcaatcaaatcgaCCAatcaataaatatatacataaacCAATCATTCAATGAATAAATAAATCAAGCAACAACCTACCGACTCTGTAATAATGTTGTTATTtttcatacatactgtatgtctaatTATTTTATACGATGTGAATTCATATTTACAAATATAACTATAAAAGGTATCTGTCACATCCAGCTGGTTATGTGGAGGAACTACAGATATGTCAGTCAATTCTGACTAAAAGCGTTTGTCCTGTGGACAAAAGCTCACATATCGGATTGGCTGCAGTTCTGGATTTTCTGTAAACCCGATAAtcgtttttaaaatgtatttagatGCTGCCTACTTCGCTGCCTACAGAGCTGCTGCTCAGCTGTCCACTGTCATTAGCCTACATCATCACATACA

Function

NR:

description
uncharacterized protein LOC109906402 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989258.1 True 1952 mRNA 0.41 5 14905007 14912257

Neighbor

gene id symbol gene type direction distance location
LOC110531577 LOC106578038 coding upstream 15763 14864590 ~ 14889244 (+)
LOC110532999 LOC106578032 coding upstream 52522 14849640 ~ 14852485 (+)
LOC110531580 LOC106578024 coding upstream 79763 14816295 ~ 14825244 (+)
LOC110531582 LOC106578023 coding upstream 141504 14756863 ~ 14763503 (+)
LOC110532934 LOC106578022 coding upstream 164562 14716449 ~ 14740445 (+)
LOC118965998 NA coding downstream 34998 14947255 ~ 14949071 (+)
LOC110531575 NA coding downstream 37180 14949437 ~ 14972051 (+)
LOC118936439 LOC106596013 coding downstream 173424 15085681 ~ 15185946 (+)
LOC118965999 LOC106596013 coding downstream 305340 15217597 ~ 15248137 (+)
LOC110531573 LOC106577850 coding downstream 340208 15252465 ~ 15262643 (+)
G773811 LOC106578037 non-coding upstream 103880 14795963 ~ 14801127 (+)
G773761 NA non-coding upstream 171555 14728870 ~ 14733452 (+)
G773752 NA non-coding upstream 204495 14700214 ~ 14700512 (+)
G773739 NA non-coding upstream 247005 14656708 ~ 14658002 (+)
G773871 NA non-coding downstream 6961 14919218 ~ 14920221 (+)
G773917 NA non-coding downstream 191600 15103857 ~ 15111275 (+)
G773918 NA non-coding downstream 195324 15107581 ~ 15108957 (+)
G773940 NA non-coding downstream 246542 15158799 ~ 15219494 (+)
G773808 NA non-coding downstream 252179 15164436 ~ 15236467 (+)
G773601 NA other upstream 520841 14382670 ~ 14384166 (+)
G773583 NA other upstream 579174 14306630 ~ 14328474 (+)
G773562 LOC106577828 other upstream 589757 14311468 ~ 14315250 (+)
G773535 LOC106577997 other upstream 688155 14213449 ~ 14216852 (+)
G773437 NA other upstream 876479 14024873 ~ 14028528 (+)
G773983 LOC106577853 other downstream 386201 15291949 ~ 15299214 (+)
G774021 NA other downstream 462967 15375224 ~ 15377188 (+)
G774065 NA other downstream 553103 15465360 ~ 15465624 (+)
LOC110531590 LOC106577858 other downstream 559250 15471215 ~ 15505643 (+)
G775142 NA other downstream 953832 15866089 ~ 15866708 (+)

Expression


Co-expression Network