LOC110531575



Basic Information


Item Value
gene id LOC110531575
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 14949437 ~ 14972051 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036989259.1
ATGTACACCAAGGAGCTTTACGTTTTTGACCATCTCCACGGCAACCCCAttgatgaggatgggggcgtGTCCAACTTTGTTCCTCCTGAGGTCCGCAATCAGCTCCTTTATTTTGCTGAAGGAGTGTCGAAGGCTGTTCTGACCATACACCCCAACAGCTCCCAGATATTCAGTGGAGAGTCAGTCACTCTCAGATGTGTCATACAGGGGGGAGGAGTCACTGACTGGGAGTACAGATGGTTAACACCCAGTCCAGATCAATGTCAACAGAAAGAACATGAATGTATTATCAGTGCAGCTGAGTTTTCCCACAGTGGTGACTACAGTTGTCTGGGATCACATCAGCAGCAGGATTCTAAATGGAGTGATAAAGTCAGACTGACAGTGACACCTCTGCCCAAAGCTACACTGACTGTAGAGCCAAACCCTGTGTTCCCTGGAGAGACAGTTACTCTGACGTGTTCAGTAGAGTCTGACAGTATCTGGAGCTATAAGTGGTACAAAGACAGGAATTATAATGTAGTATCCCAGTCTGTCAGTCACACTATAACAGGAGACACTCTCACTATCAATGGATCAACAGTGAATGAGGGTCCCTACTGGTGTCAGGGAGCGAGAGAGTCCACACCCACCTTTTCATCCATCAGTGACCCTGTCACAATCACTGTCAACGCTCTGCCTGTGGCCTCAGTGAGTGTCTCTCCTCAGGGTCTCCTCTACTCTGGAGAGACAGTCAGTCTGCAGTGTGTCATACCAGACTACACAAACTGGAGGTACCTCTGGTTCAGAGACAACCAACAGATTCCCAGTCAGACCAGTAAAAGCATCACATTCCCCATCACTCAGACTGGTCAGTACAGATgtgaagggaagaggagagatcaTCCCCAGAGGTCACATCCCAGTGATTATGTCACCATAAGTGTCACTGCCTTTCCCAAAGCTACACTGACTGTGAAGCCAAACCCGGTGTTCCCTGGAGAGACAGTTACTCTGATGTGTTCAGTTGGGTCTGACAGTATCTGGAGCTATAAGTGGTACAAAGACAGGAATGATAATGTAGTATCCCAGTCTGTCAGACACACTATAACAGGAGACACCATCACCATCAGTAGTGTTGCTGAGTCTGACCAGGGTCTCTACTGGTGTCAGGGAGAGATCCAGTCCAGATCCATATCATCAATCATCAGTGATCCTGTCACTATCACCCTGAATGCTCTGCCTGTGGCCTCAGTGAGTGTCTCTCCTCAGGGTCTCCTCTACTCTGGAGAGACAGTCAGTCTGCAGTGTGTCATACCAGGCTACACAGACTGGAGGTACCTCTGGTTCAGAGACAACCAACAGCTTCCCAGTCAGACCAGTAAAGCCGTAGATATCACCATCCCCACCACCCAGACTGGTCAGGCTGGTCAGTACAGATGTGAGGGGCTGAGGACAGATCAGCCCCAGAGGTCACAACCTAGTGATGACATCATTATCAGTGTCACTGCTCTGCCCAAAGCTACACTGACTGTAGAGCCAAACCCTGTGTTCCCTGGAGAGACAGTTACTCTGACATGTTCAGTAGAGTCTGACAGTATCTGGAGCTATAAGTGGTACAAAGACAGGAATGATAATGTAGTATCTCAGTCTGGTTACAGTAACATTGGAGTCTCTCACACCATCAGTAGAGCTGCTGAGTCTGACCAGGGTCTCTACTGGTGTCAGGGAGAGATCCGGTCCAGATCCATATCATCAATCATCAGTGATCCTGTCACTATCACCCTGAATGCTCTACCCAGAGCATCAGTGAGTATCTCTCCTCAGTTTGTCCTCTACCCTGGAGATACAGTCACTCTGCAGTGTGACATATCAGACTACACAGACTGGACATACCACTGGTTTAGAGACAACCAACTGCTTCCCAGTCCGACCAGAAAAACCatcaccttctctctccctgacaAGGCTGGTCAGTTCAAGTGTGTTGGGATGAGGGGAGGTCGGCCCCAGATGTCATATCCCAGCTTTTCTTTCCCCATCATCATCACTGCCTTGCCCAAAGCTACACTGACTGTAAAACCCAACCCTGTGTTCCCTGGAGAGACAGTTACTCTGACGTGTTCATTAGCGTCTGACAATATCTGGAGCTATCAGTGGTACAAAGACAGGAATTATAATGAAGTATCCCAGTCTGTCAGACACACTATAACAGGAGACACCCTCACCATCAGTAGAGCTGCTGAGTCTGTCCAGGGTCTCTACAGGTGTAAGGGAGAGATCCAGTCCAGATCCATATCATCAATCATCAGTGATCCTGTCACTATCACCCTGAATGTTCTGCCCTCGGCCTCAGTGAAGATAGTCACTCCACAGGGTCTCCTCTACCCTGGAGAGACAGTCACTCTGCAGTGTGACATATCAGACTACACAGACTGGACATATCGCTGGTTCAGATACAATGAAGAGCTTCCCATTCAGACCAGAACAaccatcaccatctctctccctgaccAGGCTGGTCAGTACCAGTGtgttgggaggaggagaggtcggCCCCAGATGTCATATTACAGCTCAGCTCTCCCCATCATCGTCACTGCTCTGCCCAAAGCTACACTGACTGTAAAACCTAACCCTGTGTTCCCTGGAGAGACAGTTACTCTGACGTGTTCAGTAGGGTCTGACAGTATCTGGAACTATCAGTGGTACAAAGACAGGAATGATAATGTAGTATCTCAGTCTGGTTACAGTAACACTGGAGTCTCTCACATCAGTAGAGCTGCTGAGTCTGACCAGGGTCAGTACTGGTGTGAAGGGAACAGAGTGTCTAGACCCACATCTTCACAACCAAGTTATGCTATTACTCTCACTGTAAAAGATAGTTGTCCGACGGCCACACTGAGTTCAGACAAAGAGGACGTATTCACAAGAGACAGTGTGACACTGAGCTGTACTGTAGAGTCTCCTGGATGGAAGTTTTACTGGTACAGACACAGACCAGACTCTACACCAGTAACCACAACCTCTGGATACTCCTACACACTCAGCTGGGTCAGTGTCTCTGATGGAGGACAGTACTGGTGCAGAGCTGGGAGAGGAGACCCAGTCTACTACACCCAGTACAGTGACCCAGTCCAGATAAACATTACTGAGAGGCCTGTTGCTGTTCTGACCCTCCAACCAAACTGGACCCAAATATTCAGTGGAGAGACTGTTACTATGAGATGTgacatacagggaggaggagactctAGCTGGAACTACAGATGGTATAAGAATAGTCCGGTAGTGATCCTATTTAACACAAAGCCTGAGTACAGAATCAGTCCTGTCCATAGGTCTAACAGTGGATCATATACCTGTGAGGGTGTAGAGGGAAACAAGCTCTCCAAGACCAGTGAAGCTGTACAACTGACTGTGTCTGATCAACCCAAGGCTTTTCTGAGTATCTCTCCTCAGTGGATGAACCCTAGAGACTCTGTGTCTCTGAGCTGTGGGGTTAAAGAGTTGTCTACAGACTGGAGGTTCTCCTGGTACAGGACTGTTCCCTACAGAGCTGGGTTACCCTCCCTATCAGACGAGTCTTACTCTCTACAGCCCCTATCTGACAATGGGACTAGTGAAGACTCCTACACTCTGATCCCTGCTGGTCCTACTCACACAGGAGGATATGTGTGTAGAGCTGGGAGAGGAGACCCAGTCTATGACACACTCTACAGTGAACCTCAGTTTCTCTGGTCAGGAGATCTGCAGCCTTCAGTGTCTCTTACAGTAAATCCCAACACAACTCAACACTTTACATCAACGTCTCTCTCACTGAGCTGTGAGGAGAAGGGGAACTCTACTGGATGGAGACTGAtgagctacagagggagaagagtGAAGTCGGGGTGTGTCTCTAACTGGGGATCAATAGCAGGGTCTACATGTACCATCTACACATACACATGGTACAGTGGGGTGTTCTGGTGTGAGTCTGGATCAGGAGAGTACAGTAATGCTGTCAACATCACAGTAAATGATGGTGATGTGATCCTGGAGAGTCCTGTCCATCCTGTGACTGAAAGAGACTCTGTGACTCTGTGCTGTAAATACCGTACAACCAGATCAAACTTCAAGGCTGATTTCTTCAAAGACGGAGTACTCATCAAGAATGAGACCACAGGAGAGATGACCATCCTTACAGTATCCAAGTCAGATGAAGGATTCTATAAGTGTAAATCTAGTGAAGGAGAATCACCAGAGAgctgggtgacagtgagagtctctccagtcgtAGCTCCTGGATCCTCTACATCAGTCCTAGTAGGAGTGGTTGTGGGTCTGCTTGTTGCTGGTGTCCTACTGGTCATTCTCCTGGTGCTGTTGGTGAGATATAAAAACAGCACAGGTTCCTGTTCCAACAGAATATTCTGGCCCCCTCAGCCCCAGAGCACCAACCAGGGCCCCCAACAGGACCAAGGATCTGGGTATACACATCAGCAACATGGTGACGCTAACATCTACGATACAATCAATTCCTCAGACAACAATGATAATGATGCTGCTGGTGCTTCTACTGCTGGACCAAGTCATGTGACTTACGCCCAGATTCAACTGAAAAAGTTGGACAAAAAAAAGAAAGaaaAACTAGCTGATCCAGCTAAAAATCCAGTCTACTCGTTGGTGAAAACAGGCAAAGCGACAGCAGCAGCTGAACCTGTTGATGTGACCTATGCTGAGGTGGACCTCAAAAACAAGGCCAAAGCCAAGAAGAAGCGAGCAGCAGCTGGATCTGTTGATGTGACCTATGCTGAGGTTGACCTCCAAAGAAAGGCCAAAGCCAAGAAGAAGAGAGAAACACCAACCCCACCAGAGACAGATTCAGTCTATTCTCTAGTGAAGCCATACACAGTCCCCGCAGCAGCTGGACCTGTTGATGTGACCTATGCTGAGGTTGACCTCCAAAAGAAGGTCAAAGCCAAGAAGAAGAGAGCAACCCCACCCGAGGCAGATTCAGTCTATTCTCAATTGAAGCCACGGTCATGCCCCGgtccttgagggagatggagggacacATCATCAGAGGAGGAGCAGGGAATACCTGGGAATATAGATTATtcacacatgcgcacacagacacacaagcacacccacagatacacacacagataaaggatatatatatatatatatgatttaaTATTGGTTTAACTGTGTATAACTGCAACAGGTTTTGAAACAATGATATGGTGTTATGATTATTATCTGTAGCTACAGCAAGTGTATTGTGTAATAAATTGTGTATTGAATTGTTGTAAATCTATTGGCATGTATTGTCTTTGGTTTATTACTTCTGTCACTCAGATGATAGAATACTACACTACacagccaaaagtatgtggacacacatAAGTGGATTCTGCTAT

Function


NR:

description
basement membrane-specific heparan sulfate proteoglycan core protein-like isoform X10

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036989259.1 True 5390 mRNA 0.48 28 14949437 14972051

Neighbor


gene id symbol gene type direction distance location
LOC118965998 NA coding upstream 366 14947255 ~ 14949071 (+)
LOC118966162 LOC106578024 coding upstream 37180 14905007 ~ 14912257 (+)
LOC110531577 LOC106578038 coding upstream 60193 14864590 ~ 14889244 (+)
LOC110532999 LOC106578032 coding upstream 96952 14849640 ~ 14852485 (+)
LOC110531580 LOC106578024 coding upstream 124193 14816295 ~ 14825244 (+)
LOC118936439 LOC106596013 coding downstream 113630 15085681 ~ 15185946 (+)
LOC118965999 LOC106596013 coding downstream 245546 15217597 ~ 15248137 (+)
LOC110531573 LOC106577850 coding downstream 280414 15252465 ~ 15262643 (+)
LOC118966002 NA coding downstream 370873 15342924 ~ 15348526 (+)
LOC110533001 LOC106577875 coding downstream 380231 15352282 ~ 15362094 (+)
G773871 NA non-coding upstream 29216 14919218 ~ 14920221 (+)
G773811 LOC106578037 non-coding upstream 148310 14795963 ~ 14801127 (+)
G773761 NA non-coding upstream 215985 14728870 ~ 14733452 (+)
LOC110532934 LOC106578022 non-coding upstream 225579 14716449 ~ 14740445 (+)
G773752 NA non-coding upstream 248925 14700214 ~ 14700512 (+)
G773917 NA non-coding downstream 131806 15103857 ~ 15111275 (+)
G773918 NA non-coding downstream 135530 15107581 ~ 15108957 (+)
G773940 NA non-coding downstream 186748 15158799 ~ 15219494 (+)
G773808 NA non-coding downstream 192385 15164436 ~ 15236467 (+)
G773950 NA non-coding downstream 226713 15198764 ~ 15217371 (+)
G773601 NA other upstream 565271 14382670 ~ 14384166 (+)
G773583 NA other upstream 623604 14306630 ~ 14328474 (+)
G773562 LOC106577828 other upstream 634187 14311468 ~ 14315250 (+)
G773535 LOC106577997 other upstream 732585 14213449 ~ 14216852 (+)
G773437 NA other upstream 920909 14024873 ~ 14028528 (+)
G773983 LOC106577853 other downstream 326407 15291949 ~ 15299214 (+)
G774021 NA other downstream 403173 15375224 ~ 15377188 (+)
G774065 NA other downstream 493309 15465360 ~ 15465624 (+)
LOC110531590 LOC106577858 other downstream 499456 15471215 ~ 15505643 (+)
G775142 NA other downstream 894038 15866089 ~ 15866708 (+)

Expression



Co-expression Network