LOC118965999 (LOC106596013)


Basic Information

Item Value
gene id LOC118965999
gene name LOC106596013
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15217597 ~ 15248137 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987397.1
TGAAGCCAAACCCGGTGTTCCCTGGAGAGACAGTTACTCTGATGTGTTCAGTTGGGTCTGACAGTATCTGGAGCTATAAGTGGTACAAAGACATGAATGATAATGTAGTGTCCCAGTCTGTCAGACACACTAGAACAGGAGACACCCTCACCATCAGTAGAGCTGCTGAGTCTGACCAGGGTCTCTACTGGTGTCAGGGAGAGATCCAGTCCAGATCCATATCAATCATCAGTGATCCTGTCACTATCACCCTGAATGCTCTGCCTGAGGCCTCAGTGAGTGTCTCTCCTCAGGGTCTCCTCTACTCTGGAGAGACAGTCAGTCTGCAGTGTGTCATACCAGGCTACACAGACTGGAGGTACTACTGGTACAAAAACAACCAACACCTTCCTGATGAGACCAGTAAAGTTATAGATATCACCATCCCCATCACTCTGACTGGTCAGGCTGGTCAGTACAGGTGTGAAGGGAACAGAGTGTCTAGACCCACATCTTCACAACCAAGTGATCCTGTCACTCTCACTGTAAAAGCTCTGCCTGTGGCCTCAGTGAGTGTCTCTCCTCAGGGTCTCCTCTACTCTGGAGAGAGAGTCAGTCTGCAGTGTGTCATACCAGGCTACACAGACTGGAGGTACTACTGGTACAAAAACAACCAACACCTTCCTGATGAGACCAGTAAAGTCATAGATATCACCATCCCCATCACTCTGACTGGTCAGGCTGGTCAGTACAGGTGTGAAGGGAACAGAGTGTCTAGACCCACATCTTCACCACCAAGTGATCCTGTCACTCTCACTGTAAAAGCTCTGCCTGTGTCCTCAGTGAGTGTCTCTCCTCAGGGTCTCCTCTACTCTGGAGAGAGAGTCAGTCTGCAGTGTGTCATACCAGGCTACACAGACTGGAGGTACTACTGGTACAAAAACAACCAACACCTTCCTGATGAGACCAGTAAAGTTATAGATATCACCATCCCCATCACTCTGACTGGTCAGGCTGGTCAGTACAGGTGTGAAGGGAACAGAGTGTCTAGACCCACATCTTCACCACCAAGTGATCCTGTCACTCTCACTGTAAAAGCTCTGCCTGTGGCCTCAGTGAGTGTCTCTCCTCAGGGTCTCCTCTACTCTGGAGAGAGAGTCAGGCTGCAGTGTGTCATACCAGGCTACACAGACTGGAGGTACTACTGGTACAAAAACAACCAACACCTTCCTGATGAGACCAGTAAAGTTATAGATATCACCATCCCCATCACTCTGACTGGTCAGGCTGGTCAGTACAGGTGTGAAGGGAACAGAGTGTCTAGACCCACATCTTCACCACCAAGTGATCCTGTCACTCTCACTGTAAAAGCTCTGCCTGTGGCCTCAGTGAGTGTCTCTCCTCAGGGTCTCCTCTACTCTGGAGAGAGAGTCAGGCTGCAGTGTGTCATACCAGGCTACACAGACTGGAGGTACTACTGGTACAAAAACAACCAACACCTTCCTGATGAGACCAGTAAAGTTATAGATATCACCATCCCCATCACTCTGACTGGTCAGGCTGGTCAGTACAGGTGTGAAGGGAACAGAGTGTCTAGACCCACATCTTCACCACCAAGTGATCCTGTCACTCTCACTGTAAAAGCTCTGCCTGTGGCCTCAGTGAGTGTCTCTCCTCAGGGTCTCCTCTACTCTGGAGAGAGAGTCAGGCTGCAGTGTGTCATACCAGGCTACACAGACTGGAGGTACTACTGGTACAAAAACAACCAACACCTTCCTGATGAGACCAGTAAAGTCATAGATATCACCATCCCCATCACTCTGACTGGTCAGGCTGGTCAGTACAGGTGTGAAGGGAACAGAGTGTCTAGACCCACATCTTCACCACCAAGTGATCCTGTCACTCTCACTGTAAAAGCTCTGCCTGTGGCCTCAGTGAGTGTCACTCCTCAGGGTCTCCTCTACTCTGGAGAGACAGTCAGTCTGCAGTGTGTCATACCAGGCTACACAGACTGGAGGTACTACTGGTACAAAAACAACCAACACCTTCCTGATGAGACCAGTAAAGTCATAGATATCACCATCCCCATCACCCAGACTGGTCAGGCTGGTCAGTACTGGTGTGAAGGGAACAGAGTGTCTAGACCCACATCTTCACAACCAAGTGATCCTGTCACTCTCACTGTAAAAGATTATCAGCCAAAGACCACACTGACTTCAGACAAAGAAGACGTATTCACAGGAGACAGAGTGACACTGAACTGTACTGTTGAGTCTCCTGGATGGAAATTTTACTGGTACAGACACAGACCAGACTCTACACCAGTAACCACAACCTCTGGATACTCCTACACACTCAGCAGGGTCAGTGTCTCTGATGGAGGACAGTACTGGTGCAGAGCTGGGAGAGGAGACCCAGTCTACTACACCCTGTACAGTGACCCAGTCCAGATAAACATTACTGagaggcCTGTTGCTGTTCTGACCCTCCAACCCAACTGGACCCAGATATTCATTGGAGAGACTGTCACTATGAGATGTgacatacagggaggaggagactctGACTGGAACTACAGATGGTATAAGAATAGTCCGGTAGTGATCCCCTTTAACATAAAGCCTGAGTACAGAATCAGTCCTGTCTACATGTCTAACAGTGGATCATATACCTGTGAGGGTGTAAAGGGAAACAAGTTCTCCAAGACCAGTGAGGCTGTAAAACTGACCGTGTCTGATCAACCTCAACCTGTCCTGAGAATCTCTCCTCAGTGGCTGAACCCTGGAGACTCAGTGACTCTGAGCTGTGAGGTTGACAAGACGTCTACAGACTGGAGCTTCTCCTGGTACAGGACTGTTCCCTACAGAGCTGGGTTACCCTCCCTATTACACGAGTCTTACTCTCTACAGCCCCTATCTGGCAATGTGACTACTGAAGACTCCTACACTCTGATCCCTGCTGGTCCTACTCCCACAGGAGGATATGTGTGTAGAGCTGGGAGAGGAGACCCAGTCTATGACACACTCTACAGTGAACCTCAGTTTCTCTGGTCAGGAGATCTGCAGCCTTCGGTGTCTCTTACAGTAAATCCCAACACAACTCAACACTTTACATCAAAGTCTCTCTCACTGATCTGTGAGCTGAAGGGGAACTCTACTGGATGGAGActgaagagacacacagagacagcatgGCCGTCAGAGTGTCCATCTACCTGGAGATCAATAACAGAATCCACCTGCACCATCACATCATTGGACACATGGTACAGTGGAGTGTTCTGGTGTGAGTCTGGATCAGGAGAGTACAGTAATGCTGTCAACATCACAGTAAATGGTGGTGTTGTGATCCTGGAGAGCCCTGTCCATCCTGTGACTGAAGGAGACTCTGTGACTCTGACCTGTACATTTAGACATCAGGGAACAAATTCTAAACCCAAGACTGATTTCTACAAAGATGGAACACTCATCAAGAATGAGACCACAGGAGAGATGACCATCCCTGCAGTATCCAAGTCAGATGAAGGATTCTATAAGTGTAAATCTGATGAAGGAGAATCACCAGAGAgctgggtgacagtgagagCTCCTGCTTCCTCTACATCAGTCCTAGTAGGAGTGGTTGTGGGTCTGCTTGTTGCTGGTGTCCTACTGGTCATTCTCCTGGTCCTGCTGGTGAGATATCAAAACAGCAAAGGTTCCTGTTCCAACAGAATATTCTGgcCCCCTCAGCCCCAGAGAACCAACCAGGACCCCCAACAGGACCAAGGATCTACCCAGGGTCAGGCTCCTGATACTGGGTATACACATCAGCAGCATGGTGGCACTAACATCTACGATACGATCAATTCCTCAGACAACAATGATGatgATGTTGCTGGTGCTTCTGCTGCTGGACCAAGTCATGTGACTTACGCCCAGATTCAGCTGAAAAAGTTGGACAAGAAAAAGAAAGAAAAGAGAAATTATCCTAAAGACTATCCAGTCTACTCTGAGGTGAAGACAGGGAAAGCCACAGGAGCAGCAAGACCTGTTGATGTGACCTATGCTGAGGTTGACCTCCAAAAGAGGGCCAAAGCCAAGAAGAAGAGAGAAACAGCAACCCCACCTGAGCCAGAATCTGTCTATTCTCTAGTGAAGCCATACACAGTCCCCGCAGCAGCTGGACCTGTTGATGTGACCTATGCTGAGGTTGACCTCCAAAAGAGGGCCAAAGCCAAGAAGAAGAGAGAAAGAGCAACCCCACCAGAGGCAGATTCAGTCTATTCTCGATTGAAGCCACGCTAATGCCCCGGtccttgagggagatggagggataaataactttgtgtggtgatatgttacagGtccttgagggagatggagggataaataactttgtgtggtgatatgttacaggtcctt
>TU881660
GAGTGTCTCTCCTCAGGGTCTCCTCTACTCTGGAGAGAGAGTCAGGCTGCAGTGTGTCATACCAGGCTACACAGACTGGAGGTACTACTGGTACAAAAACAACCAACACCTTCCTGATGAGACCAGTAAAGTCATAGATATCACCATCCCCATCACTCTGACTGGTCAGGCTGGTCAGTACAGGTGTGAAGGGAACAGAGTGTCTAGACCCACATCTTCACCACCAAGTGATCCTGTCACTCTCACTGTAAAAGCTCTGCCTGAAACTACAGTGAAACCCTGTGTTCACCGGAGAAACAGTCACTCTGACGTGTTCAGCTGGGTCTTACAGTGACTGGAGCTATAAATGATTATCAGCCAAAGACCACACTGACTTCAGACAAAGAAGACGTATTCACAGGAGACAGAGTGACACTGAACTGTACTGTTGAGTCTCCTGGATGGAAATTTTACTGGTACAGACACAGACCAGACTCTACACCAGTAACCACAACCTCTGGATACTCCTACACACTCAGCAGGGTCAGTGTCTCTGATGGAGGACAGTACTGGTGCAGAGCTGGGAGAGGAGACCCAGTCTACTACACCCTGTACAGTGACCCAGTCCAGATAAACATTACTGagaggcCTGTTGCTGTTCTGACCCTCCAACCCAACTGGACCCAGATATTCATTGGAGAGACTGTCACTATGAGATGTgacatacagggaggaggagactctGACT
>TU881837
cctacaatgtgattttctggatttttttttcttctcattttgtctgtcatagttgaagtgtacctatgatgaaaatacaggcctctctcatcattttaagtgggagaacttgcacaattggtggctgactaaatactttttttgccccactgtatgtctctaTGTTTTATTCTTAGGGAATTGTTTTACTTCATGCAGGtccttgagggagatggagggataaataactttgtgtggtgatatgttacaggtccttgagggagatggagggataaataaCTTTGTGTGATGATATGTTACAGGCccttgagggagatggagggataaataactttgtgtggtgatatgttacaggtccttgagggagatggagggataaataactttgtgtggtgatatgttacaggtccttgagggagatggagggataaataaCTTTGTGTGGTGATGTGTTAGAGGtccttgagggagatggagggataaataactttgtgtggtgatatgttacaggtccttgagggagatggagggataaataactttgtg
>TU881838
cctacaatgtgattttctggatttttttttcttctcattttgtctgtcatagttgaagtgtacctatgatgaaaatacaggcctctctcatcattttaagtgggagaacttgcacaattggtggctgactaaatactttttttgccccactgtatgtctctaTGTTTTATTCTTAGGGAATTGTTTTACTTCATGCAGGtccttgagggagatggagggataaataactttgtgtggtgatatgttacaggtccttgagggagatggagggataaataaCTTTGTGTGGTGATGTGTTA
>TU881841
cctacaatgtgattttctggatttttttttcttctcattttgtctgtcatagttgaagtgtacctatgatgaaaatacaggcctctctcatcattttaagtgggagaacttgcacaattggtggctgactaaatactttttttgccccactgtatgtctctaTGTTTTATTCTTAGGGAATTGTTTTACTTCATGCAGGtccttgagggagatggagggataaataactttgtgtggtgatatgttacagGtccttgagggagatggagggataaataactttgtgtggtgatatgttacaggtccttgagggagatggggggataaataactttgtgtg

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987397.1 False 4382 mRNA 0.49 25 15217597 15248105
TU881660 False 727 lncRNA 0.49 4 15229772 15238580
TU881837 False 546 lncRNA 0.40 2 15245032 15245775
TU881838 False 299 lncRNA 0.38 2 15245032 15248002
TU881841 True 340 lncRNA 0.39 2 15245032 15248137

Neighbor

gene id symbol gene type direction distance location
LOC118936439 LOC106596013 coding upstream 31651 15085681 ~ 15185946 (+)
LOC110531575 NA coding upstream 245546 14949437 ~ 14972051 (+)
LOC118965998 NA coding upstream 268526 14947255 ~ 14949071 (+)
LOC118966162 LOC106578024 coding upstream 305340 14905007 ~ 14912257 (+)
LOC110531577 LOC106578038 coding upstream 328353 14864590 ~ 14889244 (+)
LOC110531573 LOC106577850 coding downstream 4360 15252465 ~ 15262643 (+)
LOC118966002 NA coding downstream 94819 15342924 ~ 15348526 (+)
LOC110533001 LOC106577875 coding downstream 104177 15352282 ~ 15362094 (+)
LOC110531590 LOC106577858 coding downstream 223110 15471215 ~ 15505643 (+)
si:ch211-168d1.3 LOC106577859 coding downstream 275451 15523556 ~ 15561336 (+)
G773950 NA non-coding upstream 226 15198764 ~ 15217371 (+)
G773917 NA non-coding upstream 106322 15103857 ~ 15111275 (+)
G773918 NA non-coding upstream 108640 15107581 ~ 15108957 (+)
G773871 NA non-coding upstream 297376 14919218 ~ 14920221 (+)
G773811 LOC106578037 non-coding upstream 416470 14795963 ~ 14801127 (+)
G773799 LOC106577851 non-coding downstream 14676 15262781 ~ 15268676 (+)
G773973 NA non-coding downstream 27543 15275648 ~ 15276137 (+)
G773977 NA non-coding downstream 30770 15278875 ~ 15279216 (+)
G773979 NA non-coding downstream 31875 15279980 ~ 15280260 (+)
G773974 NA non-coding downstream 32314 15280419 ~ 15281635 (+)
G773601 NA other upstream 833431 14382670 ~ 14384166 (+)
G773583 NA other upstream 891764 14306630 ~ 14328474 (+)
G773562 LOC106577828 other upstream 902347 14311468 ~ 14315250 (+)
G773535 LOC106577997 other upstream 1000745 14213449 ~ 14216852 (+)
G773437 NA other upstream 1189069 14024873 ~ 14028528 (+)
G773983 LOC106577853 other downstream 50353 15291949 ~ 15299214 (+)
G774021 NA other downstream 127119 15375224 ~ 15377188 (+)
G774065 NA other downstream 217255 15465360 ~ 15465624 (+)
G775142 NA other downstream 617984 15866089 ~ 15866708 (+)
G773940 NA non-coding upstream 10278 15158799 ~ 15219494 (+)

Expression


Co-expression Network