LOC110531573 (LOC106577850)


Basic Information

Item Value
gene id LOC110531573
gene name LOC106577850
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15252465 ~ 15262643 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614816.2
tgggtctgaatattttctacagtgtgtctgtgtgtgtgtgtgtgtcacggagACCACCAGACAGGAAGTGACACAAGATGTTACCTGAAACGTAGAAGGGGACCTTTGTCGGTAAGCTAGGACCCACTTCCTCCCAAAAACACACAAGTTGCTGTGTTTTTCATGTACCTCAGCCACACTGAACAATGAGCATGCAGGAGAACTCATGCAAACCTGCAGGCATACGACACCTACATGAAAATCACACAGACACTGTTCTGATACCATCAGCCTGATCCGTACAGTAAAAGACCCCAAACACACCCACTCCTCATGGTCTAACTCTCAAGCTGAGTAAAGGGGTATTTTCAGAGAACGACTATAGAGTGTGACTTCCTTTTTAACTAACATACCGGGAGTATTCTAGAACAGCAGCGCTCATCAAAGGAAatctcttctttctcttctctactcttctcagtgtgtgtttgtgggtctAGCTAGCTACCAGTCAATCCCTTAGAGATAGGTAGGACGTACAGCCAGAGGAAACAGACATACAACTTCTAACAGAGATGTCTGGtggtcccctctcctccttctccaaacaggGAATACtcctactctctatcctccactATGGTGTGGGTATTTCTCTGTTCAACAAAGCAGTGGGGGACTCAGTGGAGCTGCCCTCAGGCTTAGAAAGGGAAGGTATCAAGTCAATGGAGTGGAAGTATAAAAAAATGGTCATTGTAGAATTTGATAGGAACATTTCCTTACCAAGATCACAGTTTAAGGGGAGACTAGAGATGAACGATAGTAACTTCAGTTTAATAATAAGAGAACTGACACTGCAAGACTCAGGGGAATTTCTAGTTTCTGCCGCATCAAACAAAGAACAGATTCCAACCAAGACCATCCATCTTCAAGTCCATGagcCTATATCCAAGGTGGAGATCCAGAAGGAGATCAAGCTATTGGCCAACCAGTCCTGTTCAGTGTGGCTGCTGTGCAACGTGTCAGTCGGCTCCAACCTCTCCTACacctgggagagagggaatgagacgTACAGGGACGACCAGCAGATACACTTCTCTCTGTCACCAGCAGACGGAGACATCAGTGTAACCTGCACTGCCTCCAACTCAGTCAGTGAGAAATCTGCCTCGGCAACAGTAAAGTGTAGTAATGACACAACCACCCCAGCTGATCTAACTGACGACACAAGAATGAAAGATACAAGAACAAACAGTCAGGTAATGTCCATCTATGAGACCGTAGAAGATCTGGCTGTCCCAATTCTGAACATGCCGCAGACTCTATATGACAAGATCACATTTGGACGCCAGCCAGAAGACCCCTCTTCTTCCTACCAGGAAGTACTGTGAGCTGAACAGGATGTGGTCATAAGCTGGGCTTCTATAGATATAGAACCCTCTGCATCTTCTGCATCCTACATGTGTACCTTCTGTAATAGATGTTACAGTTTCATTTCATCACAACctgcacatttctgtttttattttcttaCTTGTTCAGAACTGCAACCTTCGTCTGTTCATGGTCATTGTGTGGTACAActtattatttttatattattttcaAGATAGTCAGTGTTACATAACTTTTTGTTAGGTTCTATTGCATTCTATTGTTGCATGAACTGTTTATATTTGTGTATTAACGACTAATGGCAATTCAAAACTATATTCTTAAAGATTACTTGTGTTTCTGTTTGGAAACAAGTTATTTATGTTTGTATGTATTGTAGTTTAGATGTGTCTATTGTACAGTAAAAGATTTTACATTCCACAGACATGCTTTGTAGAAATCACATAGGCCACATTCACATCAATTCATCATATACTCACAAactattgttgttgttgtgtgaaaTCAGACAATGAATAGACCTTATTAATACAATAATACCGTCTTTACATATTGAGAAAAGGGAGAGAACATCCTAATAAATACAACGATTTGTAGAAATCATAACGCATAGATCATATACTGATTCACAGTAAAGAAAAAATTGCAGTATTTGAGAAAGGCTACCTTCAAGTGATAGAACAACATTAATTACAacagaaatcaaaatatattttcaggtgtgtgaataataataataataataataataataatatatgtattatatacAGCACTTCCATTTAAGAACCTCAAAGTCACTGTAAAAAACTGATTGGCTTCAACAGCTTCAGATGATAAGGCATTGAGGTAGTATGGGTAGGCAGTAGCTTAAGTGGGGGagcatacagtggcttgcgaaaggattcaccccctttgcattttttctattttgttgccttacagcctggaattaaaatagattttttggggggtt
>XM_021614815.2
tttctacagtgtgtctgtgtgtgtgtgtgtgtcacggagACCACCAGACAGGAAGTGACACAAGATGTTACCTGAAACGTAGAAGGGGACCTTTGTCGGTAAGCTAGGACCCACTTCCTCCCAAAAACACACAAGTTGCTGTGTTTTTCATGTACCTCAGCCACACTGAACAATGAGCATGCAGGAGAACTCATGCAAACCTGCAGGCATACGACACCTACATGAAAATCACACAGACACTGTTCTGATACCATCAGCCTGATCCGTACAGTAAAAGACCCCAAACACACCCACTCCTCATGGTCTAACTCTCAAGCTGAGTAAAGGGGTATTTTCAGAGAACGACTATAGAGTGTGACTTCCTTTTTAACTAACATACCGGGAGTATTCTAGAACAGCAGCGCTCATCAAAGGAAatctcttctttctcttctctactcttctcagtgtgtgtttgtgggtctAGCTAGCTACCAGTCAATCCCTTAGAGATAGGTAGGACGTACAGCCAGAGGAAACAGACATACAACTTCTAACAGAGATGTCTGGtggtcccctctcctccttctccaaacaggGAATACtcctactctctatcctccactATGGTGTGGGTATTTCTCTGTTCAACAAAGCAGTGGGGGACTCAGTGGAGCTGCCCTCAGGCTTAGAAAGGGAAGGTATCAAGTCAATGGAGTGGAAGTATAAAAAAATGGTCATTGTAGAATTTGATAGGAACATTTCCTTACCAAGATCACAGTTTAAGGGGAGACTAGAGATGAACGATAGTAACTTCAGTTTAATAATAAGAGAACTGACACTGCAAGACTCAGGGGAATTTCTAGTTTCTGCCGCATCAAACAAAGAACAGATTCCAACCAAGACCATCCATCTTCAAGTCCATGagcCTATATCCAAGGTGGAGATCCAGAAGGAGATCAAGCTATTGGCCAACCAGTCCTGTTCAGTGTGGCTGCTGTGCAACGTGTCAGTCGGCTCCAACCTCTCCTACacctgggagagagggaatgagacgTACAGGGACGACCAGCAGATACACTTCTCTCTGTCACCAGCAGACGGAGACATCAGTGTAACCTGCACTGCCTCCAACTCAGTCAGTGAGAAATCTGCCTCGGCAACAGTAAAGTGTAGTAATGACACAACCACCCCAGAGTATGATACATGGATGGAGTGGTATAGGATCTACATCGTGGTACCAGTAGGCGTCACTGTGTTGCTGATCCTCACTGTAGCTGTGGCAGTGTATTACTGCAGGGGGCGCTGTAACACGGCTGATCTAACTGACGACACAAGAATGAAAGATACAAGAACAAACAGTCAGGTAATGTCCATCTATGAGACCGTAGAAGATCTGGCTGTCCCAATTCTGAACATGCCGCAGACTCTATATGACAAGATCACATTTGGACGCCAGCCAGAAGACCCCTCTTCTTCCTACCAGGAAGTACTGTGAGCTGAACAGGATGTGGTCATAAGCTGGGCTTCTATAGATATAGAACCCTCTGCATCTTCTGCATCCTACATGTGTACCTTCTGTAATAGATGTTACAGTTTCATTTCATCACAACctgcacatttctgtttttattttcttaCTTGTTCAGAACTGCAACCTTCGTCTGTTCATGGTCATTGTGTGGTACAActtattatttttatattattttcaAGATAGTCAGTGTTACATAACTTTTTGTTAGGTTCTATTGCATTCTATTGTTGCATGAACTGTTTATATTTGTGTATTAACGACTAATGGCAATTCAAAACTATATTCTTAAAGATTACTTGTGTTTCTGTTTGGAAACAAGTTATTTATGTTTGTATGTATTGTAGTTTAGATGTGTCTATTGTACAGTAAAAGATTTTACATTCCACAGACATGCTTTGTAGAAATCACATAGGCCACATTCACATCAATTCATCATATACTCACAAactattgttgttgttgtgtgaaaTCAGACAATGAATAGACCTTATTAATACAATAATACCGTCTTTACATATTGAGAAAAGGGAGAGAACATCCTAATAAATACAACGATTTGTAGAAATCATAACGCATAGATCATATACTGATTCACAGTAAAGAAAAAATTGCAGTATTTGAGAAAGGCTACCTTCAAGTGATAGAACAACATTAATTACAacagaaatcaaaatatattttcaggtgtgtgaataataataataataataataataataatatatgtattatatacAGCACTTCCATTTAAGAACCTCAAAGTCACTGTAAAAAACTGATTGGCTTCAACAGCTTCAGATGATAAGGCATTGAGGTAGTATGGGTAGGCAGTAGCTTAAGTGGGGGagcatacagtggcttgcgaaaggattcaccccctttgcattttttctattttgttgccttacagcctggaattaaaatagattttttgggggg
>XM_021614817.2
cAGTGTTTAaagatctgtaaagttatttggatttttactaattatttttgaaagacagggtcctgaaaaagggaagtttattTTTATGCTGAGTTCAGTTTGTACGTGAGCAAAGGAGCATATATTGATAAAGATCCATTCCCCACTTCTCTTTTCCTGTAATCTCATCGTGTTCTGCTGAATGTGGGGGAGGAGTGGACTTGAATAAAGTAAAGTGTGGGTATTTCTCTGTTCAACAAAGCAGTGGGGGACTCAGTGGAGCTGCCCTCAGGCTTAGAAAGGGAAGGTATCAAGTCAATGGAGTGGAAGTATAAAAAAATGGTCATTGTAGAATTTGATAGGAACATTTCCTTACCAAGATCACAGTTTAAGGGGAGACTAGAGATGAACGATAGTAACTTCAGTTTAATAATAAGAGAACTGACACTGCAAGACTCAGGGGAATTTCTAGTTTCTGCCGCATCAAACAAAGAACAGATTCCAACCAAGACCATCCATCTTCAAGTCCATGagcCTATATCCAAGGTGGAGATCCAGAAGGAGATCAAGCTATTGGCCAACCAGTCCTGTTCAGTGTGGCTGCTGTGCAACGTGTCAGTCGGCTCCAACCTCTCCTACacctgggagagagggaatgagacgTACAGGGACGACCAGCAGATACACTTCTCTCTGTCACCAGCAGACGGAGACATCAGTGTAACCTGCACTGCCTCCAACTCAGTCAGTGAGAAATCTGCCTCGGCAACAGTAAAGTGTAGTAATGACACAACCACCCCAGAGTATGATACATGGATGGAGTGGTATAGGATCTACATCGTGGTACCAGTAGGCGTCACTGTGTTGCTGATCCTCACTGTAGCTGTGGCAGTGTATTACTGCAGGGGGCGCTGTAACACGGCTGATCTAACTGACGACACAAGAATGAAAGATACAAGAACAAACAGTCAGGTAATGTCCATCTATGAGACCGTAGAAGATCTGGCTGTCCCAATTCTGAACATGCCGCAGACTCTATATGACAAGATCACATTTGGACGCCAGCCAGAAGACCCCTCTTCTTCCTACCAGGAAGTACTGTGAGCTGAACAGGATGTGGTCATAAGCTGGGCTTCTATAGATATAGAACCCTCTGCATCTTCTGCATCCTACATGTGTACCTTCTGTAATAGATGTTACAGTTTCATTTCATCACAACctgcacatttctgtttttattttcttaCTTGTTCAGAACTGCAACCTTCGTCTGTTCATGGTCATTGTGTGGTACAActtattatttttatattattttcaAGATAGTCAGTGTTACATAACTTTTTGTTAGGTTCTATTGCATTCTATTGTTGCATGAACTGTTTATATTTGTGTATTAACGACTAATGGCAATTCAAAACTATATTCTTAAAGATTACTTGTGTTTCTGTTTGGAAACAAGTTATTTATGTTTGTATGTATTGTAGTTTAGATGTGTCTATTGTACAGTAAAAGATTTTACATTCCACAGACATGCTTTGTAGAAATCACATAGGCCACATTCACATCAATTCATCATATACTCACAAactattgttgttgttgtgtgaaaTCAGACAATGAATAGACCTTATTAATACAATAATACCGTCTTTACATATTGAGAAAAGGGAGAGAACATCCTAATAAATACAACGATTTGTAGAAATCATAACGCATAGATCATATACTGATTCACAGTAAAGAAAAAATTGCAGTATTTGAGAAAGGCTACCTTCAAGTGATAGAACAACATTAATTACAacagaaatcaaaatatattttcaggtgtgtgaataataataataataataataataataatatatgtattatatacAGCACTTCCATTTAAGAACCTCAAAGTCACTGTAAAAAACTGATTGGCTTCAACAGCTTCAGATGATAAGGCATTGAGGTAGTATGGGTAGGCAGTAGCTTAAGTGGGGGagcatacagtggcttgcgaaaggattcaccccctttgcattttttctattttgttgccttacagcctggaattaaaatagattttttggggggt

Function

NR:

description
SLAM family member 8-like isoform X1

GO: NA

KEGG:

id description
K16853 SLAMF8, CD353; SLAM family member 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614816.2 False 2350 mRNA 0.40 6 15252465 15262643
XM_021614815.2 False 2455 mRNA 0.41 7 15252478 15262641
XM_021614817.2 True 2062 mRNA 0.39 7 15257204 15262642

Neighbor

gene id symbol gene type direction distance location
LOC118965999 LOC106596013 coding upstream 4360 15217597 ~ 15248137 (+)
LOC118936439 LOC106596013 coding upstream 66519 15085681 ~ 15185946 (+)
LOC110531575 NA coding upstream 280414 14949437 ~ 14972051 (+)
LOC118965998 NA coding upstream 303394 14947255 ~ 14949071 (+)
LOC118966162 LOC106578024 coding upstream 340208 14905007 ~ 14912257 (+)
LOC118966002 NA coding downstream 80281 15342924 ~ 15348526 (+)
LOC110533001 LOC106577875 coding downstream 89639 15352282 ~ 15362094 (+)
LOC110531590 LOC106577858 coding downstream 208572 15471215 ~ 15505643 (+)
si:ch211-168d1.3 LOC106577859 coding downstream 260913 15523556 ~ 15561336 (+)
trnas-gcu-6 NA coding downstream 341675 15604318 ~ 15604399 (+)
G773808 NA non-coding upstream 15998 15164436 ~ 15236467 (+)
G773940 NA non-coding upstream 32971 15158799 ~ 15219494 (+)
G773950 NA non-coding upstream 35094 15198764 ~ 15217371 (+)
G773917 NA non-coding upstream 141190 15103857 ~ 15111275 (+)
G773799 LOC106577851 non-coding downstream 138 15262781 ~ 15268676 (+)
G773973 NA non-coding downstream 13005 15275648 ~ 15276137 (+)
G773977 NA non-coding downstream 16232 15278875 ~ 15279216 (+)
G773979 NA non-coding downstream 17337 15279980 ~ 15280260 (+)
G773974 NA non-coding downstream 17776 15280419 ~ 15281635 (+)
G773601 NA other upstream 868299 14382670 ~ 14384166 (+)
G773583 NA other upstream 926632 14306630 ~ 14328474 (+)
G773562 LOC106577828 other upstream 937215 14311468 ~ 14315250 (+)
G773535 LOC106577997 other upstream 1035613 14213449 ~ 14216852 (+)
G773437 NA other upstream 1223937 14024873 ~ 14028528 (+)
G773983 LOC106577853 other downstream 35815 15291949 ~ 15299214 (+)
G774021 NA other downstream 112581 15375224 ~ 15377188 (+)
G774065 NA other downstream 202717 15465360 ~ 15465624 (+)
G775142 NA other downstream 603446 15866089 ~ 15866708 (+)

Expression


Co-expression Network