LOC110531572 (LOC106577851)


Basic Information

Item Value
gene id LOC110531572
gene name LOC106577851
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15264166 ~ 15268722 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614813.2
AAGAGGAAGTTGACGCTATAAGTAAGACGCTATGTCAGAGACGAACAGGGTCCATTTTAAAAGTGCTGTTGAAGATGATACGTGTAGAACTTTTagttctctctctcctaacaGTCTTATCAGTGGTGATGGGAGATACCATTGGCTACCTGGGAGAGTCTGTCACCTTATCCTCTGGAGCCAATCCATCCTGGCACATCACCAAGATAACGTGGTCCATATACAACAACGACACCTGGATCGCAACATTCAGGAGCAGAAATAGCAACACAGAATGGCTCGGGAAGTTTAAGAGTCGACTGAGTCTCAACACCTCGTCTGGCGACTTGGAGATCAGAGATGTTCAGAGAGGGGATGAACTGGTTTACTCTGTTCTCCTCACACACAGTCAGGGGGAGCAGCAGATCAGTAAGGTACCACTCACTGTGACAGAGCGTCTCGTTGAGCCTAGTGTTCAAAAGGTCTTCAGCGTTCTGAAGGACGGACACTGTGTGATGGCTCTTCAGTGCTCCTCTTCGGTGAAGGACACCAGATTTTCTTGGGAGCCAGAAGCTTCGTTTGACGGCTCCTTCTGGAGGGGGAGTCCCAACGCCAACGCCTCTGTTGTCTGGGCGTCTTACAGCCCCAACAGAAATGTCATCTTCATCTGTACTGCCAGCAACGGGCTCACTAACGCCTCTAAGGTTGTGAGGGAGATATGCCAAGATGAACAGCCAAAGCCTGacgtggtggtggagggggagaacCGCGTCCCCGGGATCATAAAATTGCTCTTAGGATTTCTGTTCGGATGTCTTTTAACATATATTTTCAGAGGAGTCGAAGCATCAACAAGTTGTGTCCTACACTTTCGGGAAATGAAAAAAACTCCAGCCTACCTATAGAGAGGAGTTGAACATCGGAGCTGTCAAACCAAAACTCCAGCCTACCTATAGAGAGGAGTTGAACATCGGAGCCGTCAAACCAAAACTCCAGCCtacctatagagaggaggtaaaCATCGGAGCCGTCAAACCAAAACTCCAGCCTACCTATAGAGAGGAGTTgaactgtcacatgatctcagtatatgcaacttttcaggaaagttaggaaccaatatgcacaggcagttaggaaagcaaaggctagctttttcagaCTTTTttttgcatcctgtagcataa
>XM_021614811.2
AAGAGGAAGTTGACGCTATAAGTAAGACGCTATGTCAGAGACGAACAGGGTCCATTTTAAAAGTGCTGTTGAAGATGATACGTGTAGAACTTTTagttctctctctcctaacaGTCTTATCAGTGGTGATGGGAGATACCATTGGCTACCTGGGAGAGTCTGTCACCTTATCCTCTGGAGCCAATCCATCCTGGCACATCACCAAGATAACGTGGTCCATATACAACAACGACACCTGGATCGCAACATTCAGGAGCAGAAATAGCAACACAGAATGGCTCGGGAAGTTTAAGAGTCGACTGAGTCTCAACACCTCGTCTGGCGACTTGGAGATCAGAGATGTTCAGAGAGGGGATGAACTGGTTTACTCTGTTCTCCTCACACACAGTCAGGGGGAGCAGCAGATCAGTAAGGTACCACTCACTGTGACAGAGCGTCTCGTTGAGCCTAGTGTTCAAAAGGTCTTCAGCGTTCTGAAGGACGGACACTGTGTGATGGCTCTTCAGTGCTCCTCTTCGGTGAAGGACACCAGATTTTCTTGGGAGCCAGAAGCTTCGTTTGACGGCTCCTTCTGGAGGGGGAGTCCCAACGCCAACGCCTCTGTTGTCTGGGCGTCTTACAGCCCCAACAGAAATGTCATCTTCATCTGTACTGCCAGCAACGGGCTCACTAACGCCTCTAAGGTTGTGAGGGAGATATGCCAAGATGAACAGCCAAAGCCTGacgtggtggtggagggggagaacCGCGTCCCCGGGATCATAAAATTGCTCTTAGGATTTCTGTTCGGATGTCTTTTAACATATATTTTCAGAGAGTCCCTCACATGCTTATCAATCAGGTTCAACAAGAGTCGAAGCATCAACAAGTTGTGTCCTACACTTTCGGGAAATGAAAAAAACTCCAGCCTACCTATAGAGAGGAGTTGAACATCGGAGCTGTCAAACCAAAACTCCAGCCTACCTATAGAGAGGAGTTGAACATCGGAGCCGTCAAACCAAAACTCCAGCCtacctatagagaggaggtaaaCATCGGAGCCGTCAAACCAAAACTCCAGCCTACCTATAGAGAGGAGTTgaactgtcacatgatctcagtatatgcaacttttcaggaaagttaggaaccaatatgcacaggcagttaggaaagcaaaggctagctttttcagaCTTTTttttgcatcctgtagcata
>XR_005053187.1
AAGAGGAAGTTGACGCTATAAGTAAGACGCTATGTCAGAGACGAACAGGGTCCATTTTAAAAGTGCTGTTGAAGATGATACGTGTAGAACTTTTagttctctctctcctaacaGTCTTATCAGTGGTGATGGGAGATACCATTGGCTACCTGGGAGAGTCTGTCACCTTATCCTCTGGAGCCAATCCATCCTGGCACATCACCAAGATAACGTGGTCCATATACAACAACGACACCTGGATCGCAACATTCAGGAGCAGAAATAGCAACACAGAATGGCTCGGGAAGTTTAAGAGTCGACTGAGTCTCAACACCTCGTCTGGCGACTTGGAGATCAGAGATGTTCAGAGAGGGGATGAACTGGTTTACTCTGTTCTCCTCACACACAGTCAGGGGGAGCAGCAGATCAGTAAGGTACCACTCACTGTGACAGAGCGTCTCGTTGAGCCTAGTGTTCAAAAGGTCTTCAGCGTTCTGAAGGACGGACACTGTGTGATGGCTCTTCAGTGCTCCTCTTCGGTGAAGGACACCAGATTTTCTTGGGAGCCAGAAGCTTCGTTTGACGGCTCCTTCTGGAGGGGGAGTCCCAACGCCAACGCCTCTGTTGTCTGGGCGTCTTACAGCCCCAACAGAAATGTCATCTTCATCTGTACTGCCAGCAACGGGCTCACTAACGCCTCTAAGGTTGTGAGGGAGATATGCCAAGATGAACAGCCAAAGCCTGacgtggtggtggagggggagaacCGCGTCCCCGGGATCATAAAATTGCTCTTAGGATTTCTGTTCGGATGTCTTTTAACATATATTTTCAGAGAGTCCCTCACATGCTTATCAATCAGGTTCAACAAGAGTCGAAGCATCAACAAGTTGTGTCCTACACTTTCGGGAAATGAAAAAAACTCCAGCCTACCTATAGAGAGGAGTTGAACATCGGAGCTGTCAAACCAAAACTCCAGCCTACCTATAGAGAGGAGTTGAACATCGGAGCCGTCAAACCAAAACTCCAGCCtacctatagagaggagTTgaactgtcacatgatctcagtatatgcaacttttcaggaaagttaggaaccaatatgcac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614813.2 False 1166 mRNA 0.48 5 15264166 15268722
XM_021614811.2 False 1199 mRNA 0.47 6 15264167 15268722
XR_005053187.1 True 1089 mRNA 0.48 7 15264226 15268722

Neighbor

gene id symbol gene type direction distance location
LOC118966000 LOC106578026 coding downstream 228786 15018031 ~ 15035380 (-)
LOC110531581 LOC106578037 coding downstream 460954 14792676 ~ 14803212 (-)
LOC110531584 LOC106578021 coding downstream 571799 14687934 ~ 14692367 (-)
LOC110531585 LOC106608993 coding downstream 617412 14633925 ~ 14646754 (-)
LOC110531563 LOC106578017 coding downstream 637351 14531994 ~ 14626815 (-)
LOC110531571 LOC106577852 coding upstream 1468 15270190 ~ 15281871 (-)
LOC118966001 NA coding upstream 15589 15284311 ~ 15285624 (-)
LOC110531570 LOC106577853 coding upstream 17161 15285883 ~ 15321030 (-)
trnaa-ugc-30 NA coding upstream 28459 15297181 ~ 15297253 (-)
LOC110531568 LOC106577856 coding upstream 110607 15379329 ~ 15436702 (-)
G774673 NA non-coding downstream 13866 15249229 ~ 15250300 (-)
G774523 NA non-coding downstream 27697 15164072 ~ 15236469 (-)
G774641 NA non-coding downstream 33131 15159121 ~ 15231035 (-)
G774636 NA non-coding downstream 46930 15155093 ~ 15217236 (-)
G774570 NA non-coding downstream 77560 14971633 ~ 15186606 (-)
G774675 NA non-coding upstream 308 15269030 ~ 15269299 (-)
G774681 NA non-coding upstream 15597 15284319 ~ 15285918 (-)
G774683 NA non-coding upstream 37628 15306350 ~ 15307817 (-)
G774728 NA non-coding upstream 136780 15405502 ~ 15408709 (-)
G774767 NA non-coding upstream 238610 15507332 ~ 15507668 (-)
G774562 LOC106577809 other downstream 10193 15238058 ~ 15253973 (-)
G774427 LOC106578022 other downstream 539644 14724054 ~ 14724522 (-)
LOC118966145 LOC106599223 other downstream 1010009 14249401 ~ 14254157 (-)
LOC110531538 NA other downstream 1276584 13977459 ~ 13987582 (-)
G773168 NA other downstream 1564838 13697179 ~ 13699328 (-)
G774702 LOC106577875 other upstream 83585 15352307 ~ 15361319 (-)
G774954 NA other upstream 356480 15625202 ~ 15625920 (-)
LOC110531603 groa other upstream 513635 15781909 ~ 15787666 (-)
G775139 NA other upstream 593598 15862320 ~ 15863834 (-)
G775532 NA other upstream 644114 15912836 ~ 15913294 (-)

Expression


Co-expression Network