LOC118966002


Basic Information

Item Value
gene id LOC118966002
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15342924 ~ 15348526 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987415.1
ATCATTACACATGAACACTGCATTATACAAAGATGCATTATTTCAGGAATGCTGTGCTCCTACATTCATATGTGCAAGCCAAGAGTTACTACTTTGAGAGATTTTTATTTAGCCACATTCATCATAACACATGCAGGTTACAACACGCCATCCCTTCACACAGCTAAATAGACTGTTTTAAGTTCACATTCTGTCATTTGAGCAGAGGATACTTGTCTATATGAGAAGATGTCTTCATTGTCTGaGTCAAACCAAAGGAGGATTGTGCTGCTGGGGAAAACAGGATGGGGCAAAAGCAGTGCAGGAAACACCATCtttggaggaggagatgaagagttCAAGATAGACAGTTCAGCCAACTCTGAAACACACAAGTGTGAAACAAAGACCAAGATCATCAATGGAAGAAAGCTCACTGTAGTAGACACACCTGGACTCTTTGACACAAACATCCCTGAAGAGGAGCTGAAACCTGAACTAGTGAGATGTATTGTAGAGTGTGCTCCGGGGCCACATGCCTTTCTCATTGTGCTTAAAGTGGGAAAGTACACAGTCCACGAGGAACAAGTCATTGCAGAAATTGAGGAATGTTTTTCACCAGAGGCCTTCAAATATGCCATAGTTCTCTTCACTCATGGTTACCAGCTCAAAGGTAGAGCCATTGATGATTTTGTGAAAACTAACAAGAAATTGAATGAGCTTGTGAAGAAATGTGGTGGCCGCTGTCATGTCATTGATAATGAATTCTGGAACAACAGTCAGCAGGGTCAGTACAGCAACCAGTACCAAGTAGCAAAGTTACTCAACACCATAgaggagatgatgagagagaacagaggaggatGTTACACCAACGAGATGCTCAAAGCAGTGATGCGGGAAATAAAAGTAGAGATAGAAAGTATTACAGAGGAGTCAAAAGGCCAGAAGTCACCGGAAGAGATCAAAGAACAGGCCACTGAAAATGTGTGGAAGAGACTCCTGATCAAATTGACAGGGATAGCAACAGGTACAATAGTGGCAGCTCTCCTTGGGGTTGCAGGGGCAGTAGCATTAGTTCGCTCAGTACTTGGTAAGATTCCCACGGTAACTGAACTTGCAGCAGGAGGACTAGGAACAGCAATAACAGTAAGCATAGCTGGAGGAGTTGTTGCTGGGGGAGCAATAGGAGGGGGGATGATAGGAGCTGCTGCAGCAGAGGATGCAGAGACACCAGGAGAGGCAGCAAAGAAAGCAGCTGAGGCAGTCTGGGAAGTGGGTAAGTATATCTTGGAGGAGGGTAAAGGTATTTTGGACAGTGTAAGAAGTGTGTCAGAGGGGTACAGCAAACTGAGTTTGAGTGAAGAAAAGAAGTAGCAGGAGCACTCTAGGTATTCAGAAAACACAGGTGAAATTAGTCAATGAGTGTTAACAACCTCTGTTTCAATAGTTTACTAAACACAACAGTCAGTAccataccacagaagaagaaaaactgTTCAAACAAATAACCATTTCAGACAAATCAAACCTGTCATGTCATTGTTTTAACATAATTACAGTagcacattttttatttcaatgttttaccGAATTACACTAGCACATTTTTGATTGCTAATTTCAAATGATTAAAAGACAAATAATTTCCTTTCAATGTAAATCATGTAATGAGTGACATGAAAAAAAGCACACACAAAAAGAACACGATATATAACATGAATGATTATAACATGTCATTATAACAGTGTATGAGTTGAAAGAACTGGAGACAGAGAAGTGGCTCATAAAATTGTATTTCCCAAGGCATAGATTTGTCACGCCCttaccttagttatctttgtagtctttattattttgattaggtcagggtgtgacgagggtggtttgtttcgtttttgtattgtctaggggtttttgtaagtctaggggtttttgtaagtctaggtgtttatatgtctgtggttgcctggattggttctcaagcagaggcagctgtttatcgttgtctctgattggggaccatatttaggtagccatattccttgggtagttTGTGGGTTCTTAGTCTATGTTAAGTTGTCTGTCTGCATTAGCCGTAATAGCTTTACGTTatgtatagttttgttcagtgttcgatCTTCCATTAAAATAagtatgtacgcttaccacgctgcgccttggtctcctctataCGACGACCGTGACAAGATTTGATATCAGGGTTTCCCTTTTTACAGCCTAATAGCTTATAGTTCATGGAAATGTAGTCAGTGACATCACCTCAATTGTAAAAATATTGactttatttacaaaaaaatcttGCTGACTTATTTGATTACTATGATTCATTTTGTATTTACTCTTTTAAATGATTACAGAAGGATTGTGTTAAGGCTTGTATTCCATACTCTGTTGATTAGAATTGCTTGCCAAAACAATAAAAGAgctcaaatctaattgtattggtcacatacacgtgtttagcagatgttattgcgggtgtagtgaaatgcttgagcttctagttccgacagtgcaataatatctaacaggAAATATATAACAATTtaacaacatatacccaatacacacaaatctaagtaaggaatggaattaagaacataa

Function

NR:

description
PREDICTED: GTPase IMAP family member 7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987415.1 True 2607 mRNA 0.39 2 15342924 15348526

Neighbor

gene id symbol gene type direction distance location
LOC110531573 LOC106577850 coding upstream 80281 15252465 ~ 15262643 (+)
LOC118965999 LOC106596013 coding upstream 94819 15217597 ~ 15248137 (+)
LOC118936439 LOC106596013 coding upstream 156978 15085681 ~ 15185946 (+)
LOC110531575 NA coding upstream 370873 14949437 ~ 14972051 (+)
LOC118965998 NA coding upstream 393853 14947255 ~ 14949071 (+)
LOC110533001 LOC106577875 coding downstream 3756 15352282 ~ 15362094 (+)
LOC110531590 LOC106577858 coding downstream 122689 15471215 ~ 15505643 (+)
si:ch211-168d1.3 LOC106577859 coding downstream 175030 15523556 ~ 15561336 (+)
trnas-gcu-6 NA coding downstream 255792 15604318 ~ 15604399 (+)
nit1 nit1 coding downstream 259904 15608430 ~ 15611523 (+)
G773997 NA non-coding upstream 28460 15313841 ~ 15314464 (+)
G773998 NA non-coding upstream 30442 15312233 ~ 15312482 (+)
G773995 NA non-coding upstream 32772 15309695 ~ 15310152 (+)
G773994 LOC106577853 non-coding upstream 33996 15307999 ~ 15308928 (+)
G773992 NA non-coding upstream 37541 15305167 ~ 15305383 (+)
G774016 NA non-coding downstream 30824 15379350 ~ 15381388 (+)
G774024 NA non-coding downstream 90001 15438527 ~ 15444331 (+)
G774064 NA non-coding downstream 109765 15458291 ~ 15458506 (+)
G774069 NA non-coding downstream 120869 15469395 ~ 15469681 (+)
G774071 NA non-coding downstream 122440 15470966 ~ 15471165 (+)
G773983 LOC106577853 other upstream 43710 15291949 ~ 15299214 (+)
G773601 NA other upstream 958758 14382670 ~ 14384166 (+)
G773583 NA other upstream 1017091 14306630 ~ 14328474 (+)
G773562 LOC106577828 other upstream 1027674 14311468 ~ 14315250 (+)
G773535 LOC106577997 other upstream 1126072 14213449 ~ 14216852 (+)
G774021 NA other downstream 26698 15375224 ~ 15377188 (+)
G774065 NA other downstream 116834 15465360 ~ 15465624 (+)
G775142 NA other downstream 517563 15866089 ~ 15866708 (+)
G775306 NA other downstream 837750 16186276 ~ 16187450 (+)

Expression


Co-expression Network