LOC110531568 (LOC106577856)


Basic Information

Item Value
gene id LOC110531568
gene name LOC106577856
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15379329 ~ 15436702 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987416.1
CCCGCCAAGCAGAGCTTCTGGTAGTGGGAGCTGCACCTCCGCCGCAGTCTGTACTCTGCTTCtgcctctcttctttctcctgaCCAGCACACCTGACAGACAGCGACTCTTCAAGCCCAAGGAGGGTTCCTTCTCGTTTATTTTCTACATAATCAGAAGGGGGTACTAGAAACCCCAACAAGGCGTGATGATGGCTGTCGAAACCCAAGCGCAATACACCACCTCTTATATGATGAACGAGGAACACCAGTACATGACGCCAGAGGATGAGTGGGACAGGGACCTACTGCTGGACCCCGCCTGGGAGAAACAGCAGCGAAAGactTTCACAGCTTGGTGTAACTCCCACTTGAGGAAGGCAGGGACACAGATCGAGAACATAGAGGATGACTTCAGGAATGGCCTCAAGCTCATGCTGCTGCTGGAGGTCATCTCAGGTGAGAGACTGCCCAAACCTGACAAAGGCAAGATGCGTTTCCACAAGATCGCCAACGTGAACAAAGCCCTGGACTTCATCTGCAGCAAGGGAGTCAAGCTGGTGTCCATCGGAGCTGAGGAGATCGTCGACGGTAACACGAAGATGACTCTGGGAATGATCTGGACCATCATCCTGCGCTTCGCCATCCAGGACATCTCCGtggaagAGACCTCTGCTAAAGAGGGTCTTCTTCTATGGTGCCAGAGGAAGACTGCCCCCTACAGGAACGTTAACGTTCAAAACTTCCACATCAGTTGGAAAGATGGCCTGGCACTGTGTGCCCTGATCCACAGACACAGACCTGACCTCATTGACTACTCCAAACTGAAAAAGGATGACCCCATTGGTAACCTCAACACTGCCTTCGAGGTGGCTGAGAAGTACCTGGACATCCCCAAGATGCTCGATGCTGAGGACATTGTGAACACCCCCAAGCCTGATGAGAAGGCCATCATGACCTACGTGTCCTGCTTCTACCACGCCTTCGCTGGCGCTGAGCAGgCTGAGACAGCAGCTAACAGGATCTGTAAAGTGCTGGCTGTGAACCAGGAGAATGAGAAACTCATGGAGGAGTATGAGAAGCTGGCCAGTGAGCTGCTGGAGTGGATCCGCAAAACCATCCCGTGGCTGGAGAACCGCACGGCGGAGCATCACATGAGAGCCATGCAGCAGAAGCTGGAGGACTTCAGGGACTACCGCCGCGTCCACAAGCCGCCCCGCGTCCAGGAGAAGTGTCAGCTGGAGATCAACTTCAACACCCTGCAGACCAAGCTGAGGCTGAGCAACCGGCCCGCCTTCATGCCCTCCGAGGGAAAGATGGTCTCGgaCATAGCCAATGCCTGGAAGGGTCTGGAGCAGGTGGAGAAGGGatatgaggagtggcttcttacTGAGATCAGACGTCTGGAAAGACTGGACCACCTGGCTGAGAAGTTCAAACAGAAGTGTTCCCTGCACCAGTCCTGGACCTCAGgtAAGGAGGAGCTGCTGTCCATGAAGGACTATGAGTCGGCCTCTCTGATGGAGATCAGGGCTCTGATGAGGAAACACGAGGCCTTTGAGTCTGACCTGGCCGCCCACCAGGACAGAGTGGAGCAGATCGCTGCTATCGCACAGGAGCTCAATGAGCTGGACTACCATGATGCGTCCTCAGTGAACACCCGCTGCCAGGGCATCTGCGACCAGTGGGACAACCTGGGTACCCTCACCCAGAAGAGAAGAGACTCTctggagCGTGTGGAGAAACTGTGGGAGACCATCGACCAGCTGTACCTGGAGTTCGCCAAGAGGGCGGCGCCCTTCAACAACTGGATGGATGGAGCTATGGAGGATCTGCAGGACATGTTCATCGTCCACAGCACCGAGGAGatccattctctgATCACAGCCCATGACCAGTTCAAGGCCACCCTGCCAGAGGCTGATAAGGAGCGCATGGCCACCATGGGCATCCAGAGTGAGATCGTAAAGATCGCTCAGACCTACGGCATCAAGCTGTCAGGAGTCAACCCCTACACCAACCTCTCACCCCAGGATATCACCAACAAGTGGGAGACCgTGAAGCACCTTGTTCCTCTCAGGGACCAGATGTTGCAGGAGGAGGTAGCCAGACAGCAGGCCAACGAGAGGCTGAGGCGCCAGTTCGCTGCCCAGGCCAACATTATCGGACCCTGGATCCAGACTAAGATGGAGGAGATTGGTCATGTGTCTGTGGACATTGCTGGGTCTCTAGAGGAACAGATGAACAGCCTGAAGCAGTATGAACAAAACATTATCAACTACAAGTGTAACATTGACAAGCTGGAGGGAGACCACCAGCTCAGCCAGGAGTCCCTCATCTTCGATAACAAGCACACCAACTACACCATGGAGCATATCCGTGTGGGCTGGGAGCAGCTCCTGACCACCATCGCCCGCACCATCAACGAGGTGGAGAACCAGATCTTGACCCGCGACGCCAAGGGCATCAGCCAGGAGCAGCTCAACGAGTTCCGTGCCTCCTTCAACCACTTCGACAGGaaGAGAAACGGCATGATGGACCCAGACGACTTCCGTGCCTGTCTCATCTCCATGGGTTACGATCTGGGTGAGGTGGAGTTTGCCCGCATCATGACGCTGGTGGATTCCAACAACACTGGAGTGGTCACCTTCCAGGCCTTTATCGACTTCATGACCCGCGAGACAGCCGAGACAGACACAGCCGATCAGGTCATGGCCTCTTTCAAGATCCTGGCCTCAGACAAGTCCTACATCACGGTTGATGAGCTACGCAGGGAGCTGCCCCCAGAGCAGGCAGAGTACTGCATCAGCCGCATGACCAGGTACATTGGAGCTGACGGCCCAGCCGGAGCCCTCGACTACATCTCCTTCTCCAGCGCTCTCTATGGAGAGAGCGACTTGTaaaccccctctcctcctcctcctcctcctcctcttccttttctCCTCCCTTTATCTTCCCCCTCTCCTGTATGGAGAGAGCGActtgtttccctcctctcccttctcctctcctcctctcctcctctttccccttacttgtcctccctctatcctcctcctctcagtcATCTGAAGTTTCCCTCATTTTAAACCTTCCTCCATGTTGTCCACACTTCCCAGAGAGGAAGAGACGGTGGGAGGCTTTACTCAAATCAAAACTCAGAGACTCACCATGTCCTGTTTAGGTCTGTCTGGATATCTTACTGTTTAActgtcatccctctctcattCATACTGTCATCTGTACTGCACCAAGTGCCTGATGAGCCAGAACACCTGCAGTCACACGATAATCCGCTTCACACTAACCTTTAGTATGATCAGCAGGACAGAGAGATCACAAAGAAAGAacagaaataaagaaaaatactAAAATGGTTGAACAGTAGCAGAGTATTGGAGCACAGCCCCCGGCcctacactcttaggaaaaagggttccaaaagggttctacctggaactaaaaagggttctacctggaactaaaaagggttcttcaaagggccctcctatagggacagctgaataacccttttaggttccagataTCACCGTTTTTTCTAAGAATTTACACCTGTCCTCCTCTCAGAATATTAAAATATGTTTTGGTAAAATGGCTTACAAAAATGTGGAAGAAGATTGGTTGGTTATGTATTGTTGCAGATGCATATTGTGTTTATACTGTAGTGGAAATGCTGTCCAATCTGATTGGTTGAATCCCCCCTTACACCCCAACTTCTTTATAGCACCCCTTATCCCAGAAGACATGCCCCTCCCTTTCCATAGAAACTTGTAACGTTGTGCCAACGTTTTCATAACGTTGTCATTAAGTAGGAATCCCAACTATCCAAGATATACATGTTGAGTTATATTATGTGTAAGAAAGCCATGCAGTCTCAAGCTCACCTTCAactcagacagacaaagacagaccgTAGTACCTGTTGTCAACCATTAATGTTATGTTAACATTAGTTGTCAATAATCAAATTTAGCCTGTGATTTTAGGGATTATTTTGGACACACCCTAAATGAATGCAGTAGATCtgatgaaccccccccccaataGGCCCAACAAGAGAGAGCAACCTGAGTAATGCATTGTGGATAAGAGTTAGTCAACCACTGGTCACCCGTCACCCTGCAGACAGGAAAGCTAATTTTGTTTGAAGGACAGGAcgtcacctctctcctctgtcaccctCTATCATCACTCCCTTCGTATTGCGGTTGTCTGTTTGCTGTGCATtttgagaggagagaaagacagagagaggtgttaaatagagagcgagaatgagagagagagcgagaacgagacagagcgcaagagagagagagggcgggagacAGGACATCAGGTAAAGAGATATGGTGAACCATAGTTAGGCCCCAGActtcgtccaaaatggcaccctattccctatgtagtgcactacttttgacctgatcCAAAGTAACCACATTTACTACTTAGGGaagagggtgtcatttgggacagagACAGCATCTGTAACTCCCATGTGTATGAATTCTTTATTTTCCTCATCTGTCTTCTCTATTatgcccctcctctcctcctcactttaTTCTGTTCTATCACCCAGTCCAAGAGCTTGCTTCCATACCATCCATTTCAAAGTTAAAGACACACACCTTGGAATAAATTTAAAAAAGGGAAACTATATTACTATGTGaa

Function

NR:

description
PREDICTED: alpha-actinin-3-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K21073 ACTN2_3; actinin alpha 2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987416.1 True 4679 mRNA 0.51 22 15379329 15436702

Neighbor

gene id symbol gene type direction distance location
LOC110531570 LOC106577853 coding downstream 58299 15285883 ~ 15321030 (-)
trnaa-ugc-30 NA coding downstream 82076 15297181 ~ 15297253 (-)
LOC118966001 NA coding downstream 93705 15284311 ~ 15285624 (-)
LOC110531571 LOC106577852 coding downstream 97458 15270190 ~ 15281871 (-)
LOC110531572 LOC106577851 coding downstream 110607 15264166 ~ 15268722 (-)
rbm14b LOC106577857 coding upstream 1804 15438506 ~ 15454319 (-)
LOC110531589 ccs coding upstream 17708 15454410 ~ 15462353 (-)
LOC110531592 LOC106577860 coding upstream 116772 15553474 ~ 15569492 (-)
LOC110531593 LOC106577861 coding upstream 132933 15569635 ~ 15578714 (-)
b4gat1 b4gat1 coding upstream 158432 15595134 ~ 15599951 (-)
G774683 NA non-coding downstream 71512 15306350 ~ 15307817 (-)
G774681 NA non-coding downstream 93411 15284319 ~ 15285918 (-)
G774675 NA non-coding downstream 110030 15269030 ~ 15269299 (-)
G774673 NA non-coding downstream 129029 15249229 ~ 15250300 (-)
G774523 NA non-coding downstream 142860 15164072 ~ 15236469 (-)
G774767 NA non-coding upstream 70630 15507332 ~ 15507668 (-)
G774720 LOC106577859 non-coding upstream 122755 15559457 ~ 15561311 (-)
G774807 NA non-coding upstream 146311 15583013 ~ 15583220 (-)
G774815 NA non-coding upstream 155959 15592661 ~ 15592872 (-)
G774818 NA non-coding upstream 164164 15600866 ~ 15601141 (-)
G774702 LOC106577875 other downstream 18010 15352307 ~ 15361319 (-)
G774562 LOC106577809 other downstream 125356 15238058 ~ 15253973 (-)
G774427 LOC106578022 other downstream 654807 14724054 ~ 14724522 (-)
LOC118966145 LOC106599223 other downstream 1125172 14249401 ~ 14254157 (-)
LOC110531538 NA other downstream 1391747 13977459 ~ 13987582 (-)
G774954 NA other upstream 188500 15625202 ~ 15625920 (-)
LOC110531603 groa other upstream 345655 15781909 ~ 15787666 (-)
G775139 NA other upstream 425618 15862320 ~ 15863834 (-)
G775532 NA other upstream 476134 15912836 ~ 15913294 (-)
LOC110531626 LOC106608856 other upstream 1390351 16827053 ~ 16828583 (-)

Expression


Co-expression Network