LOC110531589 (ccs)


Basic Information

Item Value
gene id LOC110531589
gene name ccs
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15454410 ~ 15462353 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614864.2
AGGTGGCGATGACGGTCTAAATACAGTTTACCGACCTCATAAAGATGGCGGCTACCTTCTCCCGGTTAGTGCCTGTTTGGGGGAAAGTAAGACGTTTCCTAGTAAATTCTGTTATCATAGGTCAGACAACGGCGTGCTGCACAAAAATGGATACAGACAGAACTACGAAGCTGGAGTTTGCAGTGCAGATGACATGTGACAGTTGTGCAGAGAAAGTCAGAGCTGCACTGGAAGGAAAACCAGGAGTGCAGTCGGTGAAGATAGATGTGGGGAAGGAGGAGGTTCTGGTGGAGTCTGCTCTGACGTCCCATGAGGTGCAGGATCTCATAGAGAGCACTGGGCGCAGGGCAGTACTAAAGGGCATCGGAGGAACAGAATTAGACCTGGGTGCAGCGGTGGCCATGATGGGTGGTACtggtcctgtccagggggtggtGCGGTTCCTCCAGCTGTCCGAGGAGCGCTGTCTGATTGACGGGACCATTGATGGTCTGGAACCTGGCACCCACGGACTCCACGTCCACACGTTGGGAGACCTCACACAAGACTGCCAGAGCTGTGGAGAACACTATAACCCCTATGGGAGACAACATGGAGCCCCGCAGGACCCAGACAGGCATGTAGGTGATCTGGGGAATATTGTGGCCGGACCAGATGGTCGAGCCTCATTCAGACTAGAGGACCCTGAGctgaagGTGTGGGACGTGATTGGTCGGTCTCTGGTGGTGGATGCTGGGGAGGATGACCTGGGAAGGGGGGCTCACCCCCTCTCCAAACTAACCGGGAACTCCGGCCAGAGGCTGGCCTGTGGGATCATCGCTCGCGCCGCTGGCCTGTTCCAGAACGCCAAGCAGATCTGTGCGTGTGACGGGGTTACTctctgggaggagagggacagaccgCTGGCCGGGACGGGTCGCCGCAAGACCACTACAGAGACACCTGCTGCTCACCTGTGACCTGGGGTCTGTTCAGGAGGATGTGACGTTACAGAACATAAAAAAATGCATGTATTGTGTAGAATGGATATGTGTGTCAgcactattcattatatttctatctgcaatgttcaGAACGTTTCGTATCACTGAATACACCCATGAATGTCTCACTGACTGAAGTTGCACTGAGAGCGAGGGAGGGTAGGAGAAAAGAAGAGGAGAAACCGAAACCAAATGTTTGTCTATTCAGCTGTAATAATTATTGCCATATAGAATTCTTTTGAGATCGAAACCTGTCATAAGTCTAAAGAAAAACGACAGCACAATAATATGATATAGGTGTCTAGATACTTAGTGATCTCCCATTTAGGCAAGATCAGGATTCCAAGCCCAAATATTCCATGTTGACTATTCTGTTTTTGTCGACTAAGTTAACAGTTTTGTACTGTTAAGCAGTCAATGTTGTAATTCTGTTTGATTACAATTTCATACGTATCTCAATAGCTTTACTGTCTAAATATCTCTCTTGATCTCTGGATGTGCTCATTGTGTCATTGTGTTTTTAAACTGGGTGTTGATCGATGGTGACTGTTTGTGGTTCAATTACCTGTTGGTAGAATGCCATTCTACTAGGGTGAATCTCTGGTCTTTCCCAGATTCCTCgcatcctctctctaccttctccagTCGCATTGGAGGTGAAGATCACCTCAGATCTTCTCCAATGAGTTTGGGGGATTCGAGAAGCGATTAAATACtttagggcagcaggtagccgaGTGTTGGACCACTGAGGGGTCGATGGTTCGGGTCCACAAGCTGACTAAGTGAAGAGTCTGATGTGTCCTTGAGTGGGGCGCTTGACCCTAGTTGCTCCTGTGGGTCATTCTGGATACAATCATCTGCTAAATGATTAAAATTGAGCAGTTTCCATGACTTGAATCATTATTATATCAAAATCTTTGTAGCTAGTGTTGTTAGTGATTTTGTTTATCTTTCTCAAGTTCAGGAAACTTATTCATCAACTTTTCTCATTGAAATTAAATTTACAATAAAAGTTGCCCTTTGGAC

Function

symbol description
ccs Predicted to enable copper ion binding activity. Predicted to be involved in removal of superoxide radicals. Predicted to act upstream of or within metal ion transport and superoxide metabolic process. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis. Orthologous to human CCS (copper chaperone for superoxide dismutase).

NR:

description
copper chaperone for superoxide dismutase-like

GO:

id name namespace
GO:0030001 metal ion transport biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0006801 superoxide metabolic process biological_process
GO:0004784 superoxide dismutase activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K04569 CCS; copper chaperone for superoxide dismutase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614864.2 True 2012 mRNA 0.48 8 15454410 15462353

Neighbor

gene id symbol gene type direction distance location
rbm14b LOC106577857 coding downstream 91 15438506 ~ 15454319 (-)
LOC110531568 LOC106577856 coding downstream 17708 15379329 ~ 15436702 (-)
LOC110531570 LOC106577853 coding downstream 133380 15285883 ~ 15321030 (-)
trnaa-ugc-30 NA coding downstream 157157 15297181 ~ 15297253 (-)
LOC118966001 NA coding downstream 168786 15284311 ~ 15285624 (-)
LOC110531592 LOC106577860 coding upstream 91121 15553474 ~ 15569492 (-)
LOC110531593 LOC106577861 coding upstream 107282 15569635 ~ 15578714 (-)
b4gat1 b4gat1 coding upstream 132781 15595134 ~ 15599951 (-)
LOC110531598 pfdn2 coding upstream 142677 15605030 ~ 15608653 (-)
mfap3l mfa3l coding upstream 204137 15666490 ~ 15678852 (-)
G774728 NA non-coding downstream 45701 15405502 ~ 15408709 (-)
G774683 NA non-coding downstream 146593 15306350 ~ 15307817 (-)
G774681 NA non-coding downstream 168492 15284319 ~ 15285918 (-)
G774675 NA non-coding downstream 185111 15269030 ~ 15269299 (-)
G774673 NA non-coding downstream 204110 15249229 ~ 15250300 (-)
G774767 NA non-coding upstream 44979 15507332 ~ 15507668 (-)
G774720 LOC106577859 non-coding upstream 97104 15559457 ~ 15561311 (-)
G774807 NA non-coding upstream 120660 15583013 ~ 15583220 (-)
G774815 NA non-coding upstream 130308 15592661 ~ 15592872 (-)
G774818 NA non-coding upstream 138513 15600866 ~ 15601141 (-)
G774702 LOC106577875 other downstream 93091 15352307 ~ 15361319 (-)
G774562 LOC106577809 other downstream 200437 15238058 ~ 15253973 (-)
G774427 LOC106578022 other downstream 729888 14724054 ~ 14724522 (-)
LOC118966145 LOC106599223 other downstream 1200253 14249401 ~ 14254157 (-)
LOC110531538 NA other downstream 1466828 13977459 ~ 13987582 (-)
G774954 NA other upstream 162849 15625202 ~ 15625920 (-)
LOC110531603 groa other upstream 320004 15781909 ~ 15787666 (-)
G775139 NA other upstream 399967 15862320 ~ 15863834 (-)
G775532 NA other upstream 450483 15912836 ~ 15913294 (-)
LOC110531626 LOC106608856 other upstream 1364700 16827053 ~ 16828583 (-)

Expression


Co-expression Network