si:ch211-168d1.3 (LOC106577859)


Basic Information

Item Value
gene id si:ch211-168d1.3
gene name LOC106577859
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15523556 ~ 15561336 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987417.1
CTATCTTTACTGAAATAATGATGATATATATAGCCTCAATAGCCAACCATCTACAGTTAAAAGTACAGGCATAATCATAAGTATAGGACATGGCAGATATTTTACTAGTATACTactaaagagagagaatgagggggagaCAAAATTGTTTGAGCGGACCTTTGGGGGAACAGTCCGTCCGTGGGGGGAATACTGAATCACTCCAGGATGCTTTTGCAGAAGTCTTTGCGCTGTCATACCACGGCGCATTCCTGAAAAGGGAATTCACAGAATGTCACTGAAAGAGCGACGTTCTCCCGAAGGGCATGTCACAGTTGTCTGCATCCCCAAATCCCGTGGATTTTTAACTGAACAAGAAAGGACGCATATCAAGTTAGCATCTTAAAGAAGAGGAAAAGAGGAAATAGAAAAAGATGCAGGGGGATATAGGGTCCCAGCGGAGTTTCAGTGTGTTGGACCgactcctccacacacaccccgTCTGGCTGCAGCTGTCCATCAATGCTGACTCCGCCCTCTATATCCTGCTCAGAGAACCTGTCGGGACATTCCTGGTGCGTAAGTGCAGCTCCAGCCAGAGGAAGTTGTTGTGTGTCAGAGTGACCGCAGACCGAGCAGCATCCTCCATTAAGGAGTGTCTCATATGTGAGGAAGACTCCACCTTCGCCTTGGAGAGCTCCGCCCTCAGCTTCCCAGACCTCTGCCGATTGGTGGCCTTCTACTGCATTAGCAGGGATGTGCTGCCTTTTCCACTGGAGCTCCCAGAAGCCATTGCTCAGGCCTCCACCCACAGGAAGCTGGAGGCCATCTCCCATATGGGATTAGAGTTCTGGAGTTCACTCTCTGACACCCAGAATGGACCTGGGGATCTACAGGCTCCACCCACCATCAAGGCTTCACCCATTACCACCAAGACTCCGCCCACCAGTGCCATGCAGGTCAAGGCGGGTCTGTCCCATGACCTGTGTTACTTGCTGTCCCGCGGCAGACAGGAGTCTCTCTGCTTCAttaaccctctctttctccagcttgagcagcaacagcagccgCAACAGTCGAACCCGGGGGCGTCCCACAAACGCCACCGCTTCAAACGCAGCATGAGGGTCCGTGTCTCTACAGAGAGCTCCATGACTCTGTctggttgtggaggtggtggagggggggcTGGGTCATTCCCCTTGCCCCCACCGGAGAACCCCAAGGACCAGGAGAGGCTCCAGCCCACACCCCTCCAGCCCAGTCCCAAACCGCACAGAAAGGTCCATCCTGGGGCTGGCGTCCTGAGGAAAACCCCTGCACTGTCCCCCATGTCGGCCGAGGATGAGGACCTCGTGCCTGTACCGCCAGCGGCTCCAACAGATCCTCCAgtgggggaggtagaggaggacccATCTGCTCCAGAGGAGCCCAGCATCGAAGAGGCGTGCTTGGCCTTGGAGGGCCACCCAGCCCCCTCTCTGGCCCAACTGGACAGCAGCAGCTCTTTCAGCAGTCTGGAGGAAGAGGACCCAGGAGCAGAAGCAGAGGACCAGTTCTTCAAACAACCAAACCCCAACCCTCAGCACCGCCCGCCCCTGGTGCGCTCGCGGGGGGGTCACGGAGGCCTGCAGAGGATGAGCGCTGCGTTTGTGTGTTTCTTTGCTCCAGAGAAGAGGCTCGCCAGGCTGGTGGAGGAGCTGTCCCGGGAACGGAGGTCTGCGTTTGGTTCCTTGGTCCAGGAGTTCCTCCAGAAGCAGAAAGAGGAGCTGAGAGGGGTCTTGACCCAGGCTGCCTCTTCATCGTCGTCTTCCTCGCCGAAGTCCTCCTTGGCGGTGCTCCAGGGGCTGCGGTGCTTCTTGTCCCAGGCCAAGAGCTTCCTGCTGGACAGCGGAGAACTGTCGCCCCCCCTAGAGACCCTGGTGCCCGACAACGAGAAAGACCTAGCCCTGGAGAAGGCCATGTTTGGCTGTGTGCTGAAACCTCTGAGGGTGCTGCTAGACcaggccctcctctccctccacagaCAGGACGGCTCCACCCAGCACCTGGCCTCTAGTCTCCTGGCCTGCCAAGAGGGGGCGATGGAACGCCTCGGAGTGCTGGTGGGCGTGCCCGACACACGCGGAGTGGAGAGGGTGAGGCAGAAGCTGGGCCTCATGCAGCGCACCCACTCACCCATAGACAAGGTGCTGCTTCTGCTGCAGGTCTGCAAGTCGGTCCAGAAGGCCATGGGGGCCCTCCACGACGGTGGACAGGAAGTGAGCTCTGAGGACTTCCTGCCGGCGCTGTCCTATGTGATAGTGATGTGTAACACGCCTCAGATCCTACTGGAGGTGGAGTACATGATGGAACTACTAGAGCCCTCCTGGCTCACTGGGGAGGGTGGCTACTACCTGACCAGTGTCTATGCCAGCCTCTGTCTGATCCAGAGCCCTGAAGCGAAGGGGGACCAAGTCCCCCCAGGAGGTCTGACCCGCGAGGCCCTGGACGGGCTGAGGGAGTGGGGCCGCAGACGCAGCCTGGAAGCCAAGAGCAACCGTGAGAGACAACAGAACCAGAGGTGTGTTCGGGTACTGTTCCAGGACGGCGAGCGCAGCGCTGTGCGGACGCTGCAGTGGAGAGCCGGGGAGAGCAGCGAGGCCCTAGCCCGGCTCTGTGCCTCCACCTTCGGCGTCTCCGAGCCCCAGGACTACACCCTCTACTGGAGGTCCGGGGGGGAGATGAGGACCCTTCCCACCCAGACACAGCCTCAGGACCTGGCCAGCCACAGTGAGGgaggcccctctctctcctaccttcgCACGGACCACGACTTCAGCAAGATGCGGCGCCTGACCAGAGGGGGAGCTGTGGACCTGGGGGAGTCCGTGTGtgaggagtgaaggagggagggcgatggaaggaaggagggcgatggagggaggaagaggaggtggaagagttCTTCTCGGATCTCAGCGTTTTTTCgatttattgattgattaaaAAAGCTGTGTTGTGTCTTGGACGTGTTGTCATAACTACAGCTCTCACTAAAGACTAAGGGGCAAGtctcaattggcaccctattccatagtgGAGGTTTAAAAGTTGTGCACTGCACTGTATGGGCTCTGGTAAATAGGGTGTCACTTGAGACTCAGCCTTAGAGGAAGGGCAGATTGGTTGTCTATTATTCACATCACTTCTGTCAATCTGCTGCTCCTTGGTTGgaaccatagaattagaatgaattctataaattatatttctatgttcagAACCCTGTTGTtaagggttgggggggggggcctaAAACACTAGCTACCGGTATGTCCTTGCTACTGTAACGTAAGAGCGACGGAAATATTTTTTGTAAGACGGAACCTCAATACCAAAGTTAAGAAAGTAAAGTCATACACATAGGAATGTGTGCAGCTCCGAGGACAATCTTTGCTTTAAGGTTCTTTTGACTTATTTACAGTGTTACAGATAAAGAAGGAGTGAATAAGAGCCAATACAGGCAAACGCCATGAAGCCATTTTGGATTGTGAGTCTGAGGTACTGTTGATGTTGGCTCTGCCACCTCTAGTCACTTACTGTTGATGTTGGCTCTGCCACCTCTAGTCACTTACTGTTGATGTTGGCTCTGCCACCTCTAGTCACTTACTGTTGATGTTGGCTCTGCCACCTCTAGTCACTTACTGTTGATGTTGGCTCTGCCACCTCTAGTCACTTACTGTTGACAGGATTGTGGGAAAACCATTTTTTTACTTTACAAATAGAAAACTGGTTTGAGGAATTTTGTTGAAAGGCACAATATTTCCTTGTTTTAAGATTTTTGCCAACTGAATGTCTCTTTATGATTAAAAAGGGACACATTTGTCAAAATAATTACTTTTTTTTCTGTTTCACTTTCTATTACTGTTTCCATTGAACTGCTTTAATATTCCATGACAAAAGTAGCTTCTGAGAGAAAAGACCATCTACGTGACAATGGCCAATAAAACTGCCTCATGGCGATTAGCTGAATGTAAAGTCACCTAAGTGGCCATGGCGACGACTCCTGCTGCAGATCATCTTTGCCAACTGACTGTTCAACTTAATGTTAACACTTATAATGTATTATTACAATaatgaattgtaaaaaaaaaaaaaagttggaaTAGTTATATTGAGTATGAAtcacacatttctaaaaatcaAAGTGAGATATTTACCTTTATGTAAGCTTTTACTGGAGATGGGGTTCTTTAAAGAAGAACAAGGACACATTGAGGACTATTGCATGCTCTTTTCATTGAATGTAAAGACTTTGCTGGTTTCGTATGTGATGCATGTGTTGACTGTGTTGAAAAAGGCAACATAATGGCATTCACTATTTCATTGGCTGTATAACACATTGCTGTATTTTGTCCAGTAATACAAAATCGCAATAAAATTGCATTATCTGTTCATAGTGCTACTACA
>XM_036987418.1
acCACGAAagaccgccgcgccaccttcctgttcaagtgagcacagcataacaagATGCAGGGGGATATAGGGTCCCAGCGGAGTTTCAGTGTGTTGGACCgactcctccacacacaccccgTCTGGCTGCAGCTGTCCATCAATGCTGACTCCGCCCTCTATATCCTGCTCAGAGAACCTGTCGGGACATTCCTGGTGCGTAAGTGCAGCTCCAGCCAGAGGAAGTTGTTGTGTGTCAGAGTGACCGCAGACCGAGCAGCATCCTCCATTAAGGAGTGTCTCATATGTGAGGAAGACTCCACCTTCGCCTTGGAGAGCTCCGCCCTCAGCTTCCCAGACCTCTGCCGATTGGTGGCCTTCTACTGCATTAGCAGGGATGTGCTGCCTTTTCCACTGGAGCTCCCAGAAGCCATTGCTCAGGCCTCCACCCACAGGAAGCTGGAGGCCATCTCCCATATGGGATTAGAGTTCTGGAGTTCACTCTCTGACACCCAGAATGGACCTGGGGATCTACAGGCTCCACCCACCATCAAGGCTTCACCCATTACCACCAAGACTCCGCCCACCAGTGCCATGCAGGTCAAGGCGGGTCTGTCCCATGACCTGTGTTACTTGCTGTCCCGCGGCAGACAGGAGTCTCTCTGCTTCAttaaccctctctttctccagcttgagcagcaacagcagccgCAACAGTCGAACCCGGGGGCGTCCCACAAACGCCACCGCTTCAAACGCAGCATGAGGGTCCGTGTCTCTACAGAGAGCTCCATGACTCTGTctggttgtggaggtggtggagggggggcTGGGTCATTCCCCTTGCCCCCACCGGAGAACCCCAAGGACCAGGAGAGGCTCCAGCCCACACCCCTCCAGCCCAGTCCCAAACCGCACAGAAAGGTCCATCCTGGGGCTGGCGTCCTGAGGAAAACCCCTGCACTGTCCCCCATGTCGGCCGAGGATGAGGACCTCGTGCCTGTACCGCCAGCGGCTCCAACAGATCCTCCAgtgggggaggtagaggaggacccATCTGCTCCAGAGGAGCCCAGCATCGAAGAGGCGTGCTTGGCCTTGGAGGGCCACCCAGCCCCCTCTCTGGCCCAACTGGACAGCAGCAGCTCTTTCAGCAGTCTGGAGGAAGAGGACCCAGGAGCAGAAGCAGAGGACCAGTTCTTCAAACAACCAAACCCCAACCCTCAGCACCGCCCGCCCCTGGTGCGCTCGCGGGGGGGTCACGGAGGCCTGCAGAGGATGAGCGCTGCGTTTGTGTGTTTCTTTGCTCCAGAGAAGAGGCTCGCCAGGCTGGTGGAGGAGCTGTCCCGGGAACGGAGGTCTGCGTTTGGTTCCTTGGTCCAGGAGTTCCTCCAGAAGCAGAAAGAGGAGCTGAGAGGGGTCTTGACCCAGGCTGCCTCTTCATCGTCGTCTTCCTCGCCGAAGTCCTCCTTGGCGGTGCTCCAGGGGCTGCGGTGCTTCTTGTCCCAGGCCAAGAGCTTCCTGCTGGACAGCGGAGAACTGTCGCCCCCCCTAGAGACCCTGGTGCCCGACAACGAGAAAGACCTAGCCCTGGAGAAGGCCATGTTTGGCTGTGTGCTGAAACCTCTGAGGGTGCTGCTAGACcaggccctcctctccctccacagaCAGGACGGCTCCACCCAGCACCTGGCCTCTAGTCTCCTGGCCTGCCAAGAGGGGGCGATGGAACGCCTCGGAGTGCTGGTGGGCGTGCCCGACACACGCGGAGTGGAGAGGGTGAGGCAGAAGCTGGGCCTCATGCAGCGCACCCACTCACCCATAGACAAGGTGCTGCTTCTGCTGCAGGTCTGCAAGTCGGTCCAGAAGGCCATGGGGGCCCTCCACGACGGTGGACAGGAAGTGAGCTCTGAGGACTTCCTGCCGGCGCTGTCCTATGTGATAGTGATGTGTAACACGCCTCAGATCCTACTGGAGGTGGAGTACATGATGGAACTACTAGAGCCCTCCTGGCTCACTGGGGAGGGTGGCTACTACCTGACCAGTGTCTATGCCAGCCTCTGTCTGATCCAGAGCCCTGAAGCGAAGGGGGACCAAGTCCCCCCAGGAGGTCTGACCCGCGAGGCCCTGGACGGGCTGAGGGAGTGGGGCCGCAGACGCAGCCTGGAAGCCAAGAGCAACCGTGAGAGACAACAGAACCAGAGGTGTGTTCGGGTACTGTTCCAGGACGGCGAGCGCAGCGCTGTGCGGACGCTGCAGTGGAGAGCCGGGGAGAGCAGCGAGGCCCTAGCCCGGCTCTGTGCCTCCACCTTCGGCGTCTCCGAGCCCCAGGACTACACCCTCTACTGGAGGTCCGGGGGGGAGATGAGGACCCTTCCCACCCAGACACAGCCTCAGGACCTGGCCAGCCACAGTGAGGgaggcccctctctctcctaccttcgCACGGACCACGACTTCAGCAAGATGCGGCGCCTGACCAGAGGGGGAGCTGTGGACCTGGGGGAGTCCGTGTGtgaggagtgaaggagggagggcgatggaaggaaggagggcgatggagggaggaagaggaggtggaagagttCTTCTCGGATCTCAGCGTTTTTTCgatttattgattgattaaaAAAGCTGTGTTGTGTCTTGGACGTGTTGTCATAACTACAGCTCTCACTAAAGACTAAGGGGCAAGtctcaattggcaccctattccatagtgGAGGTTTAAAAGTTGTGCACTGCACTGTATGGGCTCTGGTAAATAGGGTGTCACTTGAGACTCAGCCTTAGAGGAAGGGCAGATTGGTTGTCTATTATTCACATCACTTCTGTCAATCTGCTGCTCCTTGGTTGgaaccatagaattagaatgaattctataaattatatttctatgttcagAACCCTGTTGTtaagggttgggggggggggcctaAAACACTAGCTACCGGTATGTCCTTGCTACTGTAACGTAAGAGCGACGGAAATATTTTTTGTAAGACGGAACCTCAATACCAAAGTTAAGAAAGTAAAGTCATACACATAGGAATGTGTGCAGCTCCGAGGACAATCTTTGCTTTAAGGTTCTTTTGACTTATTTACAGTGTTACAGATAAAGAAGGAGTGAATAAGAGCCAATACAGGCAAACGCCATGAAGCCATTTTGGATTGTGAGTCTGAGGTACTGTTGATGTTGGCTCTGCCACCTCTAGTCACTTACTGTTGATGTTGGCTCTGCCACCTCTAGTCACTTACTGTTGATGTTGGCTCTGCCACCTCTAGTCACTTACTGTTGATGTTGGCTCTGCCACCTCTAGTCACTTACTGTTGATGTTGGCTCTGCCACCTCTAGTCACTTACTGTTGACAGGATTGTGGGAAAACCATTTTTTTACTTTACAAATAGAAAACTGGTTTGAGGAATTTTGTTGAAAGGCACAATATTTCCTTGTTTTAAGATTTTTGCCAACTGAATGTCTCTTTATGATTAAAAAGGGACACATTTGTCAAAATAATTACTTTTTTTTCTGTTTCACTTTCTATTACTGTTTCCATTGAACTGCTTTAATATTCCATGACAAAAGTAGCTTCTGAGAGAAAAGACCATCTACGTGACAATGGCCAATAAAACTGCCTCATGGCGATTAGCTGAATGTAAAGTCACCTAAGTGGCCATGGCGACGACTCCTGCTGCAGATCATCTTTGCCAACTGACTGTTCAACTTAATGTTAACACTTATAATGTATTATTACAATaatgaattgtaaaaaaaaaaaaaagttggaaTAGTTATATTGAGTATGAAtcacacatttctaaaaatcaAAGTGAGATATTTACCTTTATGTAAGCTTTTACTGGAGATGGGGTTCTTTAAAGAAGAACAAGGACACATTGAGGACTATTGCATGCTCTTTTCATTGAATGTAAAGACTTTGCTGGTTTCGTATGTGATGCATGTGTTGACTGTGTTGAAAAAGGCAACATAATGGCATTCACTATTTCATTGGCTGTATAACACATTGCTGTATTTTGTCCAGTAATACAAAATCGCAATAAAATTGCATTATCTGTTCATAGTGCTACTACA

Function

NR:

description
ras and Rab interactor 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987417.1 False 4431 mRNA 0.52 13 15523556 15561336
XM_036987418.1 True 4072 mRNA 0.53 13 15529030 15561336

Neighbor

gene id symbol gene type direction distance location
LOC110531590 LOC106577858 coding upstream 17913 15471215 ~ 15505643 (+)
LOC110533001 LOC106577875 coding upstream 161462 15352282 ~ 15362094 (+)
LOC118966002 NA coding upstream 175030 15342924 ~ 15348526 (+)
LOC110531573 LOC106577850 coding upstream 260913 15252465 ~ 15262643 (+)
LOC118965999 LOC106596013 coding upstream 275451 15217597 ~ 15248137 (+)
trnas-gcu-6 NA coding downstream 42982 15604318 ~ 15604399 (+)
nit1 nit1 coding downstream 47094 15608430 ~ 15611523 (+)
clcn3 LOC106577864 coding downstream 50239 15611575 ~ 15660094 (+)
ino80b znhi4 coding downstream 130749 15692085 ~ 15697823 (+)
trnav-uac-14 NA coding downstream 559628 16120964 ~ 16121036 (+)
G774088 NA non-coding upstream 3213 15520076 ~ 15520343 (+)
G774071 NA non-coding upstream 52391 15470966 ~ 15471165 (+)
G774069 NA non-coding upstream 53875 15469395 ~ 15469681 (+)
G774064 NA non-coding upstream 65050 15458291 ~ 15458506 (+)
G774109 LOC106577860 non-coding downstream 6026 15567362 ~ 15569488 (+)
G774120 NA non-coding downstream 23431 15584767 ~ 15584978 (+)
G774121 NA non-coding downstream 23839 15585175 ~ 15585374 (+)
G774840 NA non-coding downstream 63980 15625316 ~ 15625581 (+)
G774065 NA other upstream 57932 15465360 ~ 15465624 (+)
G774021 NA other upstream 146368 15375224 ~ 15377188 (+)
G773983 LOC106577853 other upstream 224342 15291949 ~ 15299214 (+)
G773601 NA other upstream 1139390 14382670 ~ 14384166 (+)
G775142 NA other downstream 304753 15866089 ~ 15866708 (+)
G775306 NA other downstream 624940 16186276 ~ 16187450 (+)
LOC110532936 LOC106577844 other downstream 676038 16233342 ~ 16250864 (+)
LOC110532939 NA other downstream 778358 16315734 ~ 16342810 (+)
G775945 NA other downstream 1121858 16683194 ~ 16683491 (+)

Expression


Co-expression Network