LOC110531598 (pfdn2)


Basic Information

Item Value
gene id LOC110531598
gene name pfdn2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15605030 ~ 15608653 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614881.2
AGCCCCCACCACTAGCGACACCTTTCCAAGATGGCAGCGAACAGTAGCAGCACGGTTAGCAAACCCAGCAACATTATCGGGGGGAAACAATCAGGGCCGTCGGCCGAGCAGGTAGGCCTATATAACGAAGCTTTTTGCAACTTTGTTCAATCTAATGTTGTGGCTGCATTTCAGAGGATGCGCTCAGAACAGCGCAGCATGGCCTCAAAGGCtgcagagctggagatggagatcAACGAGCACAGCCTAGTCATCGAGACCCTAAAAGACGTggatccaaccaggaagtgcttcCGACTGGTGGGCGGGGTGCTCGTGGAGAGGACGGTTAAGGAAGTCTTACCAGCTCTGGGAAGCAATAAAGAACAGATATCAAAGATTGTAGAGTCCCTCAACATACAGATGCAGACAAAAGGCCGGGAGCTCACGGAGTATCGGGAAAAATACAATATCCGATtggtgggagaaggagaggaaggacaggGCAAATCGGCAGCTACCTCCAATGGGGGCGGGTCTAAAGGCGGTGCCGGCGTTCTAGTTTCGTAGCTTTGTGTGTGGAGACTTTAGTGCGATAGGAAATTGTGCGGAATGCCATCGAGCATCGAGTCAGCACAGATCCTGGAAGGCATTTCAAAGGCGTTTGACGTTTGACGTGTGTCTTGCATGAAAGAAATTATATAATTAACCAATGTCACAAGGGCCAGATTATCCAGAACATTCATTTCAGATCAAAGTGATCCCTTTTCACCTGTAGTTCAACAAAACTTAAACCAACATTTCACTTACACTCTGGTTTAAttacaagcctttcgccttttactcaAGACGGTGTTTCATCAAAATCTTACGGGATGATTGTTGTAAAAGACATGCCTTCTTGATGACCATGTATTGATTTGAAGTTTATTTATACTCTATTGTCAGTCATATTTCAATGTATATTATGATCCTGTTGTTGGGGGCTCTGTTTTTGAGGTTTGTCTCTGGCATGCTGTAAAATAATGCTTGCAAAAGGAATGACAATCTGATTGGAAAAACACTTCATAACAACGCACTGTATCGTTTCAATCTTTCTTGAAGGTGCACTGTGCAGAAATAGCTCTGCCATTTCCTCGTTGCTAAAATTCTAGTAGTtctcctaatttcagtttgtgacaaaacaagcaagtgtaGGAAATCATTGTACgctctaaactgctgtgaaatatatttttccataaccaaaatattgttttttcaGCTGTtggaagctggtgtacaaaacctaaATTAAAAGAAGCAAAAAATGAAACTTAAGATCAGGGAGCATAGAAATTGCGCTCACAGAACATATTTGctgcttcttagacttgtgttcaatgataatgacagatctataactcacatttctatgtgcatttgagagaagaaaaaaacagtGTGCCCAGAGTATCTGGATAACGTAAAATCAGCCTCCCAAACGGcagcctgttccctatatagcgGACTACTTTTTCtgagggtgccatttcagacacatagCTGATGTATTGGTATAGTCTTAGGTGCCCCCAAAGTATCTGAAGCACACAGCCCTAAATTACATTATCTATCACCATGTAGTTGTGTGGAGAAAATTCGTTTTTTTGTGTGAATGTTTaggaataaaaataaatgtaaacatgG
>XM_021614882.2
GTCTATATCCGACTGAGCAACACCAGAAAGTCTCTTCTTTGCTCGTGCTGTACTTTGGACTCTGTTTTAATTTCAAGTTAATGCCAAATCCAGTCAGTAAAGTATCAAAACATCAACAATGTAACTACCTACGTTGTGTTTGCGGCGCCAAATTCGCACGACTATGAGACAAGCTAGCACAACATTCTTCATGTGTTGTTTTGATTACGATTTTCCTAACAGGCAATCACATGAGACAGCTCAAGATGGTAAGCCTTGGGCCCTCAGCCCCCACCACTAGCGACACCTTTCCAAGATGGCAGCGAACAGTAGCAGCACGGTTAGCAAACCCAGCAACATTATCGGGGGGAAACAATCAGGGCCGTCGGCCGAGCAGGTTGTGGCTGCATTTCAGAGGATGCGCTCAGAACAGCGCAGCATGGCCTCAAAGGCtgcagagctggagatggagatcAACGAGCACAGCCTAGTCATCGAGACCCTAAAAGACGTggatccaaccaggaagtgcttcCGACTGGTGGGCGGGGTGCTCGTGGAGAGGACGGTTAAGGAAGTCTTACCAGCTCTGGGAAGCAATAAAGAACAGATATCAAAGATTGTAGAGTCCCTCAACATACAGATGCAGACAAAAGGCCGGGAGCTCACGGAGTATCGGGAAAAATACAATATCCGATtggtgggagaaggagaggaaggacaggGCAAATCGGCAGCTACCTCCAATGGGGGCGGGTCTAAAGGCGGTGCCGGCGTTCTAGTTTCGTAGCTTTGTGTGTGGAGACTTTAGTGCGATAGGAAATTGTGCGGAATGCCATCGAGCATCGAGTCAGCACAGATCCTGGAAGGCATTTCAAAGGCGTTTGACGTTTGACGTGTGTCTTGCATGAAAGAAATTATATAATTAACCAATGTCACAAGGGCCAGATTATCCAGAACATTCATTTCAGATCAAAGTGATCCCTTTTCACCTGTAGTTCAACAAAACTTAAACCAACATTTCACTTACACTCTGGTTTAAttacaagcctttcgccttttactcaAGACGGTGTTTCATCAAAATCTTACGGGATGATTGTTGTAAAAGACATGCCTTCTTGATGACCATGT

Function

symbol description
pfdn2 Predicted to enable protein folding chaperone. Predicted to be involved in protein folding. Predicted to be part of prefoldin complex. Predicted to be active in cytoplasm. Orthologous to human PFDN2 (prefoldin subunit 2).

NR:

description
prefoldin subunit 2-like isoform X2

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0016272 prefoldin complex cellular_component
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09549 PFDN2; prefoldin subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614881.2 False 1668 mRNA 0.42 5 15605030 15608388
XM_021614882.2 True 1113 mRNA 0.47 4 15605805 15608653

Neighbor

gene id symbol gene type direction distance location
b4gat1 b4gat1 coding downstream 5079 15595134 ~ 15599951 (-)
LOC110531593 LOC106577861 coding downstream 26316 15569635 ~ 15578714 (-)
LOC110531592 LOC106577860 coding downstream 35538 15553474 ~ 15569492 (-)
LOC110531589 ccs coding downstream 142677 15454410 ~ 15462353 (-)
rbm14b LOC106577857 coding downstream 150711 15438506 ~ 15454319 (-)
mfap3l mfa3l coding upstream 57837 15666490 ~ 15678852 (-)
LOC118966163 aadat coding upstream 75986 15684639 ~ 15688747 (-)
intu LOC106577868 coding upstream 89169 15697822 ~ 15740853 (-)
LOC118966198 NA coding upstream 134689 15743342 ~ 15743550 (-)
LOC110531603 groa coding upstream 173256 15781909 ~ 15787666 (-)
G774799 NA non-coding downstream 1057 15603448 ~ 15603973 (-)
G774820 NA non-coding downstream 2833 15601958 ~ 15602197 (-)
G774818 NA non-coding downstream 3889 15600866 ~ 15601141 (-)
G774815 NA non-coding downstream 12158 15592661 ~ 15592872 (-)
G774807 NA non-coding downstream 21810 15583013 ~ 15583220 (-)
G774947 NA non-coding upstream 8397 15617050 ~ 15617894 (-)
G774950 NA non-coding upstream 11789 15620442 ~ 15620815 (-)
G774952 NA non-coding upstream 13422 15622075 ~ 15622298 (-)
G774957 NA non-coding upstream 20390 15629043 ~ 15633427 (-)
G774959 NA non-coding upstream 21450 15630103 ~ 15631781 (-)
G774702 LOC106577875 other downstream 243711 15352307 ~ 15361319 (-)
G774562 LOC106577809 other downstream 351057 15238058 ~ 15253973 (-)
G774427 LOC106578022 other downstream 880508 14724054 ~ 14724522 (-)
LOC118966145 LOC106599223 other downstream 1350873 14249401 ~ 14254157 (-)
LOC110531538 NA other downstream 1617448 13977459 ~ 13987582 (-)
G774954 NA other upstream 16549 15625202 ~ 15625920 (-)
G775139 NA other upstream 253667 15862320 ~ 15863834 (-)
G775532 NA other upstream 304183 15912836 ~ 15913294 (-)
LOC110531626 LOC106608856 other upstream 1218400 16827053 ~ 16828583 (-)

Expression


Co-expression Network