LOC110531603 (groa)


Basic Information

Item Value
gene id LOC110531603
gene name groa
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15781909 ~ 15787666 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614892.2
TcctctatttggtaaaacacaTGATTACCAGAAAAACCAGGGCACCCACATCCGACAACAGAATCATCATTGGAGACCCATAGTACAGCAGCCTCCCACAGTGCTGCAAGTAAAAGGATATCACCATGAACACTGCAAACATAACCATCGTTCTGCTCACCCTCCTGGCAATCTTCTCAGCAACTGAAGGGAAAAGACAGCCACGGGTTCTACGCTGCCTTTGCCCCAACGTGCAGACTGGTCGTATTCCGTTCAGGAATCTGAAGAGAGTGCTGCATCTCCCTCCTCGACCGCACTGCTCAAAGACTGAAGTCATTATCACACTCAAAAATGGACGTCAACTCTGCCTGGACCCAAATGACCGCCCGGTGAAGATTCTGGTGGCGAGATCAACCATAAGAATGCAGGAAAGTAAACATTCTAAAGAGGTTGGAAGCACTACTCATACCCCGTAACACTTGTTAACAAAATGGTGAATGTGATTCAACAACCTGTGTCTTGGACTGCCGGCCCAGCGCTCTCTTCTGATACAATTCATTGCATTGTAGGGGATGTATGTTTGCTCTGCGAAAGCTTTCACTAGACAACTTTCTTCTTATGAGCGGAAGTGTACAATGTAGCACATTTTATGTCTATTGCTTGTTTTTATTATATGTTTATTACATATGTTATAATACAAATATGTTTATTATATCTTTACCTGTGAAGGACCCAGGAAGGGTCAGAGGGATGAGTCCTTAGAAGTAGGTAAATGAAAAGAGTTCCTTATAAGAGGACTTTTAGACCTTAGATCAAAGTGTTTATCCATGTTATATTTATGCTTTCACTTCATTTCCAAGCAAGCAAATAAAAGCAACATATTCATATTTGTTGACTGTAGTGGTATATTCATGCTATttctattgaacctttatttaaccagtaaaAACCTGTTGAGACACAGTCTCTTTTTCAAGTTAGACCTGGTCAAGAAAGCAAGCAGTCAacacaacattacaaaatgtaaAACATATAACACAAACAGCACACCAGCACCACACTTATATAATGTTACATTTTCAGTCAGAATATAAGCATCATACTAAAGATAATGGCAGTGTAGTGTAGTCTCAAATGGAACATATTACATTTATGGTGCACTACACAAACAATGATTGGCTAAAAACAGGTCAATGATGGTATTCCGCTGTGGCCTGCTCGCTCCGGGCGTAGATCTATATCTTTGGTATTTTCTCCGTGCCTCTTCTTTTTGGGGGTTCTTGGTTCTGGTCTGATTCTGGAGCGGGATAAGTGTATAGGAGgaaggggggtgga
>TU883145
GAATCATCATTGGAGACCCATAGTACAGCAGCCTCCCACAGTGCTGCAAGTAAAAGGATATCACCATGAACACTGCAAACATAACCATCGTTCTGCTCACCCTCCTGGCAATCTTCTCAGCAACTGAAGGGAAAAGACAGCCACGGGTTCTACGCTGCCTTTGCCCCAACGTGCAGACTGGTCGTATTCCGTTCAGGAATCTGAAGAGAGTGCTGCATCTCCCTCCTCGACCGCACTGCTCAAAGACTGAAGTCATTATCACACTCAAAAATGGACGTCAACTCTGCCTGGACCCAAATGACCGCCCGGTGAAGATTCTGGTGGCGAGATCAACCATAAGAATGCAGGAAAGTAAACATTCTAAAGAGGTTGGAAGCACTACTCATACCCCGTAACACTTGTTAACAAAATGGTGAATGTGATTCAACAACCTGTGTCTTGGACTGCCGGCCCAGCGCTCTCTTCTGATACAATTCATTGCATTGTAGGGGATGTATGTTTGCTCTGCGAAAGCTTTCACTAGACAACTTTCTTCTTATGAGCGGAAGTGTACAATGTAGCACATTTTATGTCTATTGCTTGTTTTTATTATATGTTTATTACATATGTTATAATACAAATATGTTTATTATATCTTTACCTGTGAAGGACCCAGGAAGGGTCAGAGGGATGAGTCCTTAGAAGTAGGTAAATGAAAAGAGTTCCTTATAAGAGGACTTTTAGACCTTAGATCAAAGTGTTTATCCATGTTATATTTATGCTTTCACTTCATTTCCAAGCAAGCAAATAAAAGCAACATATTCATA
>TU883146
atcgtttgtggccggtgtttgcttgtttgcagaccttttttgtacagctttgacagtgctactggtaatagtggtggcgcttggcaaattcagaacacacaacattccATAATATAACTGATATTTGagtgtcaaattaaaagcttatttaacaGGTCAAATAGTGTAATTCGACACGTCAAAAAGTGTtatttgatggggatttttttgaCACGCAGGGACCCAATCATTGTTCCATACTCAACAGATAAATCAACACATTGATAGTTGACCATCGGGTTAAATGTTTTGACATTGATCTTCAGACTAAGTGTTGAAAACATGAAAAGTAACTTACAATAAAAAAAACGGTGGAGGTTTAAGAATTTGCTCAAAGGAACACAGAACAAAGGTACTGGTGCACATCTTGAAGATAATGCGTTAAAGGAATTGCTGGTAATTCCTTACCTTGAAAGAAGTCTCTGGAGTACAGACAATCTCCCTTTAATTATTTTAGTATCACACTCAAAAATGGACGTCAACTCTGCCTGGACCCAAATGACCGCCCGGTGAAGATTCTGGTGGCGAGATCAACCATAAGAATGCAGGAAAGTAAACATTCTAAAGAGGTTGGAAGCACTACTCATACCCCGTAACACTTGTTAACAAAATGGTGAATGTGATTCAACAACCTGTGTCTTGGACTGCCGGCCCAGCGCTCTCTTCTGATACAATTCATTGCATTGTAGGGGATGTATGTTTGCTCTGCGAAAGCTTTCACTAGACAACTTTCTTCTTATGAGCGGAAGTGTACAATGTAGCACATTTTATGTCTATTGCTTGTTTTTATTATATGTTTATTACATATGTTATAATACAAATATGTTTATTATATCTTTACCTGTGAAGGACCCAGGAAGGGTCAGAGGGATGAGTCCTTAGAAGTAGGTAAATGAAAAGAGTTCCTTATAAGAGGACTTTTAGACCTTAGATCAAAGTGTTTATCCATGTTATATTTATGCTTTCACTTCATTTCCAAGCAAGCAAATAAAAGCAACATATTCATA

Function

NR:

description
growth-regulated alpha protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614892.2 False 1314 mRNA 0.41 4 15781909 15787666
TU883145 False 806 TUCP 0.42 4 15782357 15787606
TU883146 True 1046 lncRNA 0.37 2 15782357 15785529

Neighbor

gene id symbol gene type direction distance location
LOC118966198 NA coding downstream 38359 15743342 ~ 15743550 (-)
intu LOC106577868 coding downstream 41056 15697822 ~ 15740853 (-)
LOC118966163 aadat coding downstream 93162 15684639 ~ 15688747 (-)
mfap3l mfa3l coding downstream 103057 15666490 ~ 15678852 (-)
LOC110531598 pfdn2 coding downstream 173256 15605030 ~ 15608653 (-)
LOC110531606 LOC106577834 coding upstream 14316 15801982 ~ 15804621 (-)
LOC118966175 LOC106577834 coding upstream 22485 15810151 ~ 15813197 (-)
cxcd2 cxcd2 coding upstream 32745 15820411 ~ 15823218 (-)
LOC118966003 NA coding upstream 66551 15854217 ~ 15857206 (-)
LOC110532935 LOC106577836 coding upstream 80240 15867906 ~ 15891269 (-)
G775042 NA non-coding downstream 5475 15776086 ~ 15776434 (-)
G775028 NA non-coding downstream 8108 15773567 ~ 15773801 (-)
G775003 NA non-coding downstream 49150 15728685 ~ 15732759 (-)
G774989 NA non-coding downstream 68255 15711446 ~ 15713654 (-)
G774983 NA non-coding downstream 90230 15691479 ~ 15691679 (-)
G775050 NA non-coding upstream 1945 15789611 ~ 15791739 (-)
G775053 NA non-coding upstream 5180 15792846 ~ 15793351 (-)
G775054 NA non-coding upstream 5805 15793471 ~ 15794006 (-)
G775056 NA non-coding upstream 6848 15794514 ~ 15794974 (-)
G775062 NA non-coding upstream 12229 15799895 ~ 15800176 (-)
G774954 NA other downstream 155989 15625202 ~ 15625920 (-)
G774702 LOC106577875 other downstream 420590 15352307 ~ 15361319 (-)
G774562 LOC106577809 other downstream 527936 15238058 ~ 15253973 (-)
G774427 LOC106578022 other downstream 1057387 14724054 ~ 14724522 (-)
LOC118966145 LOC106599223 other downstream 1527752 14249401 ~ 14254157 (-)
G775139 NA other upstream 74654 15862320 ~ 15863834 (-)
G775532 NA other upstream 125170 15912836 ~ 15913294 (-)
LOC110531626 LOC106608856 other upstream 1039387 16827053 ~ 16828583 (-)
G776294 NA other upstream 1077801 16865467 ~ 16866034 (-)
G776340 LOC106577790 other upstream 1222346 17010012 ~ 17014685 (-)

Expression


Co-expression Network