LOC118966175 (LOC106577834)


Basic Information

Item Value
gene id LOC118966175
gene name LOC106577834
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15810151 ~ 15813197 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989276.1
AGCAGACAGACACTAAACTGGAGACGAGAAGAGCAACTCAGCAAAGAAAACTGTTGAACTCAGAAATTCACTGCAactgaagaagaaaaagaagaagactGCAGCTGGCTTACTGGTCTACCTTCTGATACAACAGCCACACTGCAACTACAGTCTACAGAGTCAAGATCATCATGAATACTGCAATGACTGTTATTGTTCTTCTGGTCTGCTCAGACGTCATCTACATGATACAAGGGAGAGGTATACAATATCCTCGATGCCGCTGTCCTAAAGTACACGCAGGGGGGGTGAATATCAGGTTAATCAGGAAACTGACCTATTACCGTCCTCGCTCACACTGCTCTAAGGAAGAAGTCATTGTCACACTGAAAACCAGGGGTTCGCTCTGTCTCGACCCAAATGGGAATTTTGCCAAAACACTGATTGAAAGACAAATCAAAGTAAATCAACAGCGTCATAATCAACGTTCCATTGAGACTCTCTCCCCCCATACCACCCCTAGCACTTGATCACTCTTTGTCTGGCACTGGAAGCTGTGCCAACCTGCAACCCctctgctggcttgcctctgaggTGGGGTTGGCCCCAGTCAAGTCTTGGATGGTAGACAACAACCAGAACAAGTGGTGTTGGAGTGCCAGTAGGGGGCACTGTTCCCTCTGGTCCAAAGAGACTTCAATCAATGAGTCAGGACAGTGATAGGGACACTGCCCTACAAAGGgtattatttatttgtatatatttctatgttttatgtatacagtatagacattaaGGAAGAACATAATAGTATTGTTGATATAAAACCTGTCTTTGATATATTTATTGTCATGTATTTAATTTTTTCAAATAAAACAAACAATAATAA

Function

NR:

description
CXC chemokine d1

GO:

id name namespace
GO:0042119 neutrophil activation biological_process
GO:0006955 immune response biological_process
GO:0030593 neutrophil chemotaxis biological_process
GO:0005576 extracellular region cellular_component
GO:0005153 interleukin-8 receptor binding molecular_function
GO:0008009 chemokine activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989276.1 True 871 mRNA 0.42 4 15810151 15813197

Neighbor

gene id symbol gene type direction distance location
LOC110531606 LOC106577834 coding downstream 5530 15801982 ~ 15804621 (-)
LOC110531603 groa coding downstream 22485 15781909 ~ 15787666 (-)
LOC118966198 NA coding downstream 66601 15743342 ~ 15743550 (-)
intu LOC106577868 coding downstream 69298 15697822 ~ 15740853 (-)
LOC118966163 aadat coding downstream 121404 15684639 ~ 15688747 (-)
cxcd2 cxcd2 coding upstream 7214 15820411 ~ 15823218 (-)
LOC118966003 NA coding upstream 41020 15854217 ~ 15857206 (-)
LOC110532935 LOC106577836 coding upstream 54709 15867906 ~ 15891269 (-)
LOC110531609 LOC106577837 coding upstream 138731 15951928 ~ 15979801 (-)
LOC110531610 LOC106577838 coding upstream 178744 15991941 ~ 16029898 (-)
G775062 NA non-coding downstream 9975 15799895 ~ 15800176 (-)
G775056 NA non-coding downstream 15177 15794514 ~ 15794974 (-)
G775054 NA non-coding downstream 16145 15793471 ~ 15794006 (-)
G775053 NA non-coding downstream 16800 15792846 ~ 15793351 (-)
G775050 NA non-coding downstream 18412 15789611 ~ 15791739 (-)
G775104 NA non-coding upstream 13393 15826590 ~ 15826845 (-)
G775105 NA non-coding upstream 15047 15828244 ~ 15828548 (-)
G775106 NA non-coding upstream 16462 15829659 ~ 15830128 (-)
G775113 NA non-coding upstream 27464 15840661 ~ 15840864 (-)
G775120 NA non-coding upstream 31543 15844740 ~ 15844966 (-)
G774954 NA other downstream 184231 15625202 ~ 15625920 (-)
G774702 LOC106577875 other downstream 448832 15352307 ~ 15361319 (-)
G774562 LOC106577809 other downstream 556178 15238058 ~ 15253973 (-)
G774427 LOC106578022 other downstream 1085629 14724054 ~ 14724522 (-)
G775139 NA other upstream 49123 15862320 ~ 15863834 (-)
G775532 NA other upstream 99639 15912836 ~ 15913294 (-)
LOC110531626 LOC106608856 other upstream 1013856 16827053 ~ 16828583 (-)
G776294 NA other upstream 1052270 16865467 ~ 16866034 (-)
G776340 LOC106577790 other upstream 1196815 17010012 ~ 17014685 (-)

Expression


Co-expression Network