LOC118966003


Basic Information

Item Value
gene id LOC118966003
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15854217 ~ 15857206 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987430.1
ATTTCAAATGGAAATCGCTGAggtcacagccttattctttCTTGTTCTTACTGTCCTGACACTAATTCAGTCCAATTCGTGCACTGATAACAACCTATTCTATTATtgaaaataaagattaaatattaAACTGCAACAAGTGCCAGATTGGCGGTTTCCAAACAACACAGGTTCTGTAGCCCTTGTGAAGCACTGGGGAGAAATATGTAAAAGTTGACATTTTCTTTACATTTAGTTTATGACTAACTCCCAATGTGTCCTCTCTCCATAGTTTGACATAAAGATCCCGGTTGCCATTGTCAACTGTAGTTGCAGTGTTTCCTGTGGATCCAGGGGATTTTAAACAAAACTCTTACATAACATGCAGTATGGGAGCCAAACACAGTAAAACATGTACAGACACAGATGAGGATCCATTAATTACAAATGAAGTGTTAGATGAAGAGGAGGTCCTGTTTAATCGTTTGGATTTTGTGCTTATTGGAGGTAAGGGTGCTGGAAAGAGTACCGTAGGAAACATAATCCTTGACAAGAAGTCCTCTTTCTGGATATTCAGTAATAAACAACGTGTGAAGAAAATAAATCAGAAAATAACTGTGATCCGCACTCCAGGCTGGAGTGAGTCTGGACTCTATAGCAGTCAAAAGAAGATAAAGCGGCAGATCCAAGACTCTGTTAAGTCATTTAAAGACGGACCTAATGCTGTCCTCTTGGTCATTGAATCCACCTCTAAAAAGTATAGTTTTAATATGGGTGAGCAGAATATACTGGAAGATCTGCTTACCAAGGAAGTATGGGATTATACTGTGGTGTTGTTCACAAAAGGGGAAAAACTGGCTGAATTTGACCTCAGTGAGCAGAAAATCAAAGATACATTTGAGCATTtgataagaaaatgtggaaaccGGTGTCATGTTCTCTATGACAACAAGCCACGCAAGCAACAAaacagggaggtgatcaagacaTTGGAGGACATGTCTCTTAAAAACAAATATGAGAATTTCTACGTGGAGCAAGATGACACCGATTCTTTAACGATATCCAAGAGGTTGATGAAGAAGATCGCTCTGAAAGGAAACATTTTGAACAAAATTACAAAACTTTATTCACGTCTATCAACTGAAAATGGCAGATCCAACGAGTCCCTTCAGAATGAAATCAAAAAACTGAAAGAGATCCTTAAACAGAAGAATGCGGATATAACAAGACTACAGTCTTGTCTTAATCAGCATTCAGGGACAGACTCTCTCAGTCTGTcaaatatagacagacagacacagacagactgtcCAGGACTCCCCGAAGAAAACCAACAGAAACATCCCTTGATGGGAGAAGATAGCAATGAGGACACAAAAGTGGAGAGAAAATACTGGATGAatgaggtgaaggagagggatatagagataGAACAGTTAAAGACTAAGTTGGGAAAGCAAGCCAGCTATGGTACCATTGCAAAACCAGTGAACATGAATGGGAGACAGGACACAAATGGTAAATTCTTCAAGAAACACAAGTTGGCGTTGGAGGACCGTCTGGGACTGTTGCGGCCCATACTTCGGCTTCTCCAGGAGCGAGGGGTTCTGAATGACGAGGAGAGGCAGGAGGTGgacaacaaaacaaacaagacacTGAAGAACCAGGCCCTGCTGGAAATGGTTTTGTTGAAGGGAGCTTGTGCCCATGAGCAGTTCTACCAGGTACTGAGAGAAGTAGACCCTTTCCTAGTAAAGGACCTGGAAGAGAAGACAAGTTGACAAGAgcaggttggtgtgtagttaaGGATTCCGACCCCAACCAGAATAGGAGACCACTCTCCAGTTATGTTTGACATTATCTGTGCTGCCTACCAGATTAGGAACCTGTCGATTTCTAATCACTGGGATTTACTGGGATTTACATGCATTCATTTTACTGGGAATTACATGCATTCAGAGGGGTAAAGCGTTTTTCAAAATATACTGTTCAGAAAGGACAATATTCTTCACATTACATCACAAGTTAAATGATGTCTTAGCCTACTCCATGTAAAATGTATCTTTTAAGTGTCTTGAATAGGCCCCCAGGTCTCAGGAAAGGTGATGTGACCATGTAAGGCTAACATTTAACAGCCTCTACTACACAGGTGTACTAACTGCACACAACAAGCTCAGGTAAAAGTAAATACGCTGATCAGGAAAGTCTGTGGTTGAAGCTTGACACCCCCTGGTGTCATAGTGGAGGATGGAAATTGTTGGGCTTTGAAAATGATACTTTACACTGTATCATCTTGTGAGCCTCAATCCAAATCACTGCATGTTATAGTTCTGTCACTtcattttgtattttgttttatcatgtattttcctaCCATAGCCTATTCTGCTGTGTGAAACACAATTATTTCTCAGTgttc
>TU883253
ATGGAAATCGCTGAggtcacagccttattctttCTTGTTCTTACTGTCCTGACACTAATTCAGTCCAATTCGTGCACTGATAACAACCTATTCTATTATtgaaaataaagattaaatattaAACTGCAACAAGTGCCAGATTGGCGGTTTCCAAACAACACAGGTTCTGTAGCCCTTGTGAAGCACTGGGGAGAAATATGTAAAAGTTGACATTTTCTTTACATTTAGTTTATGACTAACTCCCAATGTGTCCTCTCTCCATAGTTTGACATAAAGATCCCGGTTGCCATTGTCAACTGTAGTTGCAGTGTTTCCTGTGGATCCAGGGGATTTTAAACAAAACTCTTACATAACATGCAGTATGGGAGCCAAACACAGTAAAACATGTACAGGTACGTCTCAGACAGAACTAGATTTCTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987430.1 False 2401 mRNA 0.41 3 15854217 15857206
TU883253 True 421 lncRNA 0.38 1 15856779 15857199

Neighbor

gene id symbol gene type direction distance location
cxcd2 cxcd2 coding downstream 30999 15820411 ~ 15823218 (-)
LOC118966175 LOC106577834 coding downstream 41020 15810151 ~ 15813197 (-)
LOC110531606 LOC106577834 coding downstream 49596 15801982 ~ 15804621 (-)
LOC110531603 groa coding downstream 66551 15781909 ~ 15787666 (-)
LOC118966198 NA coding downstream 110667 15743342 ~ 15743550 (-)
LOC110532935 LOC106577836 coding upstream 10700 15867906 ~ 15891269 (-)
LOC110531609 LOC106577837 coding upstream 94722 15951928 ~ 15979801 (-)
LOC110531610 LOC106577838 coding upstream 134735 15991941 ~ 16029898 (-)
trnal-cag-5 NA coding upstream 156330 16013536 ~ 16013618 (-)
LOC110531611 LOC106577839 coding upstream 191538 16048744 ~ 16087030 (-)
G775120 NA non-coding downstream 9251 15844740 ~ 15844966 (-)
G775113 NA non-coding downstream 13353 15840661 ~ 15840864 (-)
G775106 NA non-coding downstream 24089 15829659 ~ 15830128 (-)
G775105 NA non-coding downstream 25669 15828244 ~ 15828548 (-)
G775104 NA non-coding downstream 27372 15826590 ~ 15826845 (-)
G775511 NA non-coding upstream 22133 15879339 ~ 15879538 (-)
G775523 NA non-coding upstream 40728 15897934 ~ 15898210 (-)
G775524 NA non-coding upstream 41819 15899025 ~ 15899479 (-)
G775525 NA non-coding upstream 43686 15900892 ~ 15901203 (-)
G774954 NA other downstream 228297 15625202 ~ 15625920 (-)
G774702 LOC106577875 other downstream 492898 15352307 ~ 15361319 (-)
G774562 LOC106577809 other downstream 600244 15238058 ~ 15253973 (-)
G774427 LOC106578022 other downstream 1129695 14724054 ~ 14724522 (-)
G775139 NA other upstream 5114 15862320 ~ 15863834 (-)
G775532 NA other upstream 55630 15912836 ~ 15913294 (-)
LOC110531626 LOC106608856 other upstream 969847 16827053 ~ 16828583 (-)
G776294 NA other upstream 1008261 16865467 ~ 16866034 (-)
G776340 LOC106577790 other upstream 1152806 17010012 ~ 17014685 (-)

Expression


Co-expression Network