LOC110532935 (LOC106577836)


Basic Information

Item Value
gene id LOC110532935
gene name LOC106577836
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15867906 ~ 15891269 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987431.1
CCCCATACAGAGAGCCCGTAGCAGCTtttctgtgtgagagagacacactCAGCCGACTGAGGAACAATTCTACCAGTCTACTGCAACCTTCCCCTCTTCAACTTCTACAGAGGCCTGTGAGGTGACATTTCAGCGCTAGTACCATGTCTAACCCGGAGCCCGCAGCCCAGCCACCGCCCCAGGTGTCCCACCGCGGCCGCAGCGCCGCCCCCATCGCCAGCTCCAatgcagagggggaggaggtgccTGAGTTCGATTCCTTCGGCATAATTGGACCCCGAGGACCTCCTCCACtcagggagtTCTTGGACATCTGGGACGTGAACATGCTGCGGAGGCCAGATGAGGTCAATACgccacagcacagcacacacctGTATGCCAGTGACCACCTCATCGTCCGTAGGGGCCAGGAGTTCCAGCTCAAGGTGACCTTTGACCGTCCTTACAAACCCTCCGATGATCAGTTTGCTGTGGAGTTCGTCATTGGGGGCAGTCCCCAGTACAGTAAGGGCACCTACATCCCCGTGTCTGTGGCCAAGGACCGCCAGAGCCCGTGGGCTGGCCGGGTGGTGGACAGCACCGACAACGTAGTCACAGTGGGCATCACCCCCGCGCCAGACTGCATTGTGGGAAAGTGGCGCACGTACGTGGCGGTGGTGACGCCCTACGGAATCCGCAGGACCAGGAGGGACGAGAGTCGAGACCTCTACGTTCTCTTCAACGCCTGGGCAACAGGTGATTCTGTGTTCCTGGATGATGCCgatgagagggaggagtgtgTTCTCAACGAGGTGGGGGTCATCTACCACGGGGCATATGACGACATGTCTGAGCGGCCCTGGAACTTTGGTCAGTTTGACTATGGGGTGCTGGATGCCTGTCTGTTCATCATGGATAAAGCTGCCATGCCCATCACCAACCGGGGCGACGCCATCAAAGTAGCCCGGAAGGCCTCCGCCATGctGAACTCTCATGACGACGATGGGGTGCTGGTGGGGAACTGGAGTGGTGATTACACCTACGGAGTGGCACCCACCTCCTGGACAGGAAGCACTGAGATCCTCCTCAACTACTCCAGCAGCAAGACACCTGTCTGCTACGCCCAGTGCTGGGTCTATGCTGCCGTCTTCAACACCTTCCTGCGCTGTCTGGGCATCCCCGCCAGGGTTGTCACCAACTTCTTCTCTGCCCACGACAACGACGGCAACCTGAAGACTGATGTTATCCTAGATGAGAATGGCAGAATTGACAAGCACCGCACCAAGGACTCCATCTGGAACTACCATTGCTGGAACGAGTGCTACATGAGCAGGCCGGACCTTCCTCAAGGGTTTGGGGGCTGGCAGGCTGTGGATGCTACACCCCAGGAGACCAGCGATGGGATGTACAGGTGTGGTCCTGCATCTGTCCAGGCCATCAAACACGGACAGATCTGCTTCCCGTTCGACGCACCATTCCTGTTTGCTGAGGTGAACAGTGATGTGGTGTTCTACTCACGGAACCCCAGAGACGGAACTCTGGATCCGGTCAAGGTCAACAGCAGCCATGTTGGCAGGATGGTGGTGACCAAAGTGCCCGGCCAGGATGCTCGCCGTGACATCACTGATCAGTACAAGTTCCctgaggGTAGTCCCGAGGAGCGCACGGTGCTGGAGAAGGCAGAGGAGTACGGCTGTCATCGTGAGAAGGCCACCCCTCCGGAGGCTGACGTGGAGCTAGACATGCCCCTGATGGAGGTGAGGGTGGGGGATGACTTTGAGCTGAAGCTGGAGTTCAACAACACGAGTGACCAGGCACGTACCGTGGACGTGTACGTCAGTGGCAATGTGGTGTATTACACTGGAGTCACCAGCTCTGAGTTCCTCTTCAAAACACCTAGAGTGATTCTGGATCCCAAGAAAGCTGAGAAGCAGGTGATGGAGGTGCGTTCCCAGGACTACATGAGAAAGCTGGTGGAGCAGGCCAACCTCCACTTCATCGCCACCGGGAAGGTCAAGGAGACCGGCCAGATCATCACCAGCATGAGGGTCGTCACCCTACACACCCCCAAACTCTCTGTAGAGGTGTCTGGTCTGGCCAAGGTGAGTGAGGAGATGATGGTGACCGTGGAGTTCACAAACCCATTCAAGTTTAATCTGGAGGATGTGTATGTTCGTGTGGAGGGGCCAGGAGTCATGCCACCCAAGTATAAACATTACAGTCTGATCACGGCAGGCTCGTCCCTGACGTGGACCGAGGGTGTCACCCCCCGTAGGGCGGGGCCAACTAAGCTGATGGCCAGTCTGGACTGTGCTGCCCTCAGACAGGTGTACGGACAGGCCCAGCTCACCGTCAAGCCCTGAGCAACACAGGAGACAACACATCTACAGCCCTGTTACAGCCTTGTTACAGCCCAACTAGCAACAGTTTAGAGATtaggggctctattcaatccgcatcTCGGAAATTCAGCTTTACTGCGTGAttaaaatttaaaggcaatgttaccctTTTAGTGGAGTCTGCAATCACGTTAAACGCtgcatgtcggctcaatcggaaatgaccttaTCGCGGAATCTATATCGCTTCagcaatacagattgaatagagctctAGGGTTGAATTGTTGCTTTTGTTAACTTTAGTACACTGATCATGTAGcttcacaaaatatatatattttctaactCTGCAACATTTACTGTAATTCAATGCAGTTGTTTTGTTTTCACATGACTTCTATAGCCTTCAAGTAAAAGACAACTACATCATACATGTAGCTACTATAACCCATTTACCAACAGTTTAGAGATGGGGTTGCTTTGTTGTTAAATATGAGTGAATGCATCTATGGTCATGTTGTTTCACAAAATagaactacagtatgtaatgcaatGACGTTAAGGACAAGTTAAGtgtcattgttttgtttttacttTTGACTTCTAGCACAACATGTTTTATATCACGCAAATAAAATAATACACGATGG
>TU883707
ATCATACATGTAGCTACTATAACCCATTTACCAACAGTTTAGAGATGGGGTTGCTTTGTTGTTAAATATGAGTGAATGCATCTATGGTCATGTTGTTTCACAAAATagaactacagtatgtaatgcaatGACGTTAAGGACAAGTTAAGtgtcattgttttgtttttacttTTGACTTCTAGCACAACATGTTTTATATCACGCAAATAAAATAATACACGATG

Function

GO:

id name namespace
GO:0018149 peptide cross-linking biological_process
GO:0046872 metal ion binding molecular_function
GO:0003810 protein-glutamine gamma-glutamyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987431.1 False 2977 mRNA 0.53 15 15867906 15891269
TU883707 True 224 lncRNA 0.32 1 15867907 15868130

Neighbor

gene id symbol gene type direction distance location
LOC118966003 NA coding downstream 10700 15854217 ~ 15857206 (-)
cxcd2 cxcd2 coding downstream 44688 15820411 ~ 15823218 (-)
LOC118966175 LOC106577834 coding downstream 54709 15810151 ~ 15813197 (-)
LOC110531606 LOC106577834 coding downstream 63285 15801982 ~ 15804621 (-)
LOC110531603 groa coding downstream 80240 15781909 ~ 15787666 (-)
LOC110531609 LOC106577837 coding upstream 60659 15951928 ~ 15979801 (-)
LOC110531610 LOC106577838 coding upstream 100672 15991941 ~ 16029898 (-)
trnal-cag-5 NA coding upstream 122267 16013536 ~ 16013618 (-)
LOC110531611 LOC106577839 coding upstream 157475 16048744 ~ 16087030 (-)
LOC110531612 LOC106577840 coding upstream 204693 16095962 ~ 16117909 (-)
G775120 NA non-coding downstream 22940 15844740 ~ 15844966 (-)
G775113 NA non-coding downstream 27042 15840661 ~ 15840864 (-)
G775106 NA non-coding downstream 37778 15829659 ~ 15830128 (-)
G775105 NA non-coding downstream 39358 15828244 ~ 15828548 (-)
G775523 NA non-coding upstream 6665 15897934 ~ 15898210 (-)
G775524 NA non-coding upstream 7756 15899025 ~ 15899479 (-)
G775525 NA non-coding upstream 9623 15900892 ~ 15901203 (-)
G775538 NA non-coding upstream 34958 15926227 ~ 15926590 (-)
G775541 NA non-coding upstream 39356 15930625 ~ 15930937 (-)
G775139 NA other downstream 4072 15862320 ~ 15863834 (-)
G774954 NA other downstream 241986 15625202 ~ 15625920 (-)
G774702 LOC106577875 other downstream 506587 15352307 ~ 15361319 (-)
G774562 LOC106577809 other downstream 613933 15238058 ~ 15253973 (-)
G775532 NA other upstream 21567 15912836 ~ 15913294 (-)
LOC110531626 LOC106608856 other upstream 935784 16827053 ~ 16828583 (-)
G776294 NA other upstream 974198 16865467 ~ 16866034 (-)
G776340 LOC106577790 other upstream 1118743 17010012 ~ 17014685 (-)
G776355 NA other upstream 1134111 17025380 ~ 17025813 (-)
G775511 NA non-coding upstream 11209 15879339 ~ 15879538 (-)

Expression


Co-expression Network