LOC110531609 (LOC106577837)


Basic Information

Item Value
gene id LOC110531609
gene name LOC106577837
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15951928 ~ 15979801 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614897.2
GGCACACTGGATCCTTGAGGGGTGGAACTGACCATCCATCAGTTAGCTAAATTATTTCCAAGCGTAGCACTCACTGTCACTTTTGTTTTTTCATATGTATGTGTTTTATTTTACATGAAACGAGATgtggtttatttatttactaagttGGCTGTCGTTGGTGATACAAATATCTTTCGTCACACTAGCAATTGcTGCTGGCCTGTATTATTTGGCAGAACTAATAGAAGAATACACAGTTGCCACTAGTCGAATAATAAAGTACATGATACTGTTCTCCACAGGCGTGCTGTCGGGGCTGTACCTGTTTGAAGGCTTCCCATGGCTGATGATGGGCTGTGGTCTCTTCACCAACCTGGTGTACTTTGGCCTCCTGCAGACCTTCCCTTACATACTGCTGAGCTCACCTAACTTCATCCTCTCCTGTGtattGGTGGTGCTGAACCACTACATGGCCTTCCAGTACTTTGCAGCAGAGTATTACCCCTTCTCAGAGGTCCTTGCGTACTTCACCATCTGTCTGTGGATTATCCCCTTCTCGTTCTTCGTGTCACTCTCTGCTGGGGAGAACGTGCTTCCATCCACCATGCAGCAAGGAGATGACGTGGTCTCAAATTACTTCACCAAGGGAAAGAGGGGCAAGCGGTCCGGAATCCTGCTCATCTTCTCATTCCTAAAGGAGGCGGTGTTGCCTAGTCGACAGAAGATGTACTGATGCTCTACCTGGGGgtttgggtgggggtgggggggggatagATTTGGGAAGGGACTAAAGGAGAGGTggcggaggaggagggaagaaaaggaggaggaaggagagtgcATCGTAGCAGAGCAGATGAGAGCTCCCACTATTACTACGGACTAGCAGCAGTGCGTTTTACAGGACTGATacatctctcttactctctctgtgtccgaaatggcaccctattccctatatagtacacttatatatatatatatatagtacactatatagggtatCCATGTCGGTCTGTGATGACGACTGCCAATGAACAACTGAagacttctccctccctctctggctcCTGTTCTCCAGCTACAGTAAAAGCCTCTGTAGGCTCTACTCCAACACTCTTCGGTTCTGTTTTATAAAGGTTTGTTAAGGAAACTACGTGCTGGTGTGAGTCATCTAGGCCGTATTCATTAGCGCAAAATGGAAAcgagcgtttcttattggacaagttcatgtTGTTCCCTCTGTTTATAGTCAGTtgtcttctgtttggtgcctaatgaataacAGCTAAGTGGAGAAGTCAGGTTGGAAGTGAGAATGAGAACAAGGTTGGGGTAAAACTAAGCCAGATAGGATCTCTTGAATgagtccaaatggcaccctatttcctacatagtgcacttcttttgacctgagtcccatgggccctggtcaaaagtagtacactatatagggaatagggtaccatttgggacacaacccttgtcttgtcttgtgtgCTGGGCCGTTAACTCCCTGCAAGTATGGGGTCGCCTATAACCCAATGTTTGTACGTGGACCCATAGGaatgcatttttttgttgtttcttcACTGTTCCCCATTCATTGACTTTATCGTTATAAAATTACTTATTCTCCTGAACTGtttaaaagaagaaaaaaaacttaaataatatataagtgattttttttttggggggggggggggggggggtatcaatTGATAGAAAAAACTGAACAAACAAACATTCCCACAAATACTTGTGCAATGATTTCTGTATGCCTGTTATGGCTGAATCTGGGTTTGTTTAGAGGGAGGAACTGATCATGTGATTATTAAAGAGGCAGTACATGGTGTGAGACTCATCACTGATTGGTTGTTTGGAAGATGCATGGTATAAGACTGATTAGCTGTGAGGCagggtacagtgccttcagaaaatattcacaccccttgactttttacacattttgtcgttctgcagcctgaatttaaaatgagtTAAATAGAGATTTGGAATTAGCTTTTGAGATGTTttacaaatgtaataaaa

Function

NR:

description
PREDICTED: protein TEX261-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614897.2 True 2037 mRNA 0.44 6 15951928 15979801

Neighbor

gene id symbol gene type direction distance location
LOC110532935 LOC106577836 coding downstream 60659 15867906 ~ 15891269 (-)
LOC118966003 NA coding downstream 94722 15854217 ~ 15857206 (-)
cxcd2 cxcd2 coding downstream 128710 15820411 ~ 15823218 (-)
LOC118966175 LOC106577834 coding downstream 138731 15810151 ~ 15813197 (-)
LOC110531606 LOC106577834 coding downstream 147307 15801982 ~ 15804621 (-)
LOC110531610 LOC106577838 coding upstream 12140 15991941 ~ 16029898 (-)
trnal-cag-5 NA coding upstream 33735 16013536 ~ 16013618 (-)
LOC110531611 LOC106577839 coding upstream 68943 16048744 ~ 16087030 (-)
LOC110531612 LOC106577840 coding upstream 116161 16095962 ~ 16117909 (-)
trnak-cuu-4 NA coding upstream 153244 16133045 ~ 16133117 (-)
G775516 NA non-coding downstream 141 15950795 ~ 15951787 (-)
G775541 NA non-coding downstream 20991 15930625 ~ 15930937 (-)
G775538 NA non-coding downstream 25338 15926227 ~ 15926590 (-)
G775525 NA non-coding downstream 50725 15900892 ~ 15901203 (-)
G775524 NA non-coding downstream 52449 15899025 ~ 15899479 (-)
G775570 NA non-coding upstream 7604 15987405 ~ 15987780 (-)
G775577 NA non-coding upstream 25963 16005764 ~ 16006258 (-)
G775584 NA non-coding upstream 34955 16014756 ~ 16015038 (-)
G775585 NA non-coding upstream 35240 16015041 ~ 16015365 (-)
G775591 NA non-coding upstream 49163 16028964 ~ 16029642 (-)
G775532 NA other downstream 38634 15912836 ~ 15913294 (-)
G775139 NA other downstream 88094 15862320 ~ 15863834 (-)
LOC110531603 groa other downstream 164322 15781909 ~ 15787666 (-)
G774954 NA other downstream 326008 15625202 ~ 15625920 (-)
G774702 LOC106577875 other downstream 590609 15352307 ~ 15361319 (-)
LOC110531626 LOC106608856 other upstream 847252 16827053 ~ 16828583 (-)
G776294 NA other upstream 885666 16865467 ~ 16866034 (-)
G776340 LOC106577790 other upstream 1030211 17010012 ~ 17014685 (-)
G776355 NA other upstream 1045579 17025380 ~ 17025813 (-)
G776461 NA other upstream 1265633 17245434 ~ 17245797 (-)

Expression


Co-expression Network