XLOC_026615 (ramp2)


Basic Information

Item Value
gene id XLOC_026615
gene name ramp2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 36836711 ~ 36846496 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051851
GGACAGACAGCAGAACCAAGCCTGGATTAAAGCAGAATGGCCAGCTTACTTACACCTACGTCAAAGCCAACATGGAACCTTCTGTTTTGGGtctGTCTGTGTGCAATGGTCTCAGGTCTGCAGACTCTGGTACCAAATGGACAAAAACACTCTGTGAAGATGACTGTATCGACCTTGCCTACAGTGCAAACCACAGCATACACCAGAGCAGATCCTGTTCATGGAAATGGAGGAACAATTGGCTGCGCTAACAAGGGCGGCTGTGAAGTATACTGCTCAATTTGTGTGAATATAACAGCTCAAGAATGCTATGAAATACTGGTGAATCACTGGTGTAATTATCATTTTGTTTTGGCTATGGACTCCATGAACAGTACAGACTGGTGTTCACTGGAGAAAGTAAAAAGTGCATACAACAATTTCACAATGTGCACTGAGACTGTTGCTGACTGTCTGCTGGTTCCCTGGCCAAATCGATTTGTAGAACAGAAATTTGTGGATATCCATGCAACCTATTTTCACGATTGTCCCACAGAGGCACTGAGGGATCCCCCTCCCAGCATCATCCTTGCCCTTGTCATGACCCCCATATGCCTAATCCCTGTTATGGTGGTCCTAGTTGTTTTCAAGACTAAAAATGGAGACAGGAGGTCATGAAGCAGACTCCAGATGCAAGAAGATTTTGTTCCTGTTTATTCATCagctttatttctttttcattctggATGATGTCCCACCCAGGAATGAAATGAACTTGCACCTGGTATCATCCAGAATGGAGGATGAGCATTTGTTTTGGGAGTGTCCACTGACTGGAAAATGTTACTGTACTTTACTAAAATAATTGGTGGTTAGAAATGTGTATTTATCATTCACTTACAAACAAGATGCATTTCTGACAATTTACAGTATTAGTATGAAAATCACATCTCTATagcataaatatgttttgttgtcTTCATTCTGTGAATACACATAAATGTGAAATGAAGAGGTCAATTTGAAACATTCAGACGCAATGTGTTCATAAACAAGAGTACAAAACACAACACAGAACTACATACTGATCTGACTTTCCACTTTATGCACTGTAAGAATTATTTAATCCATGTTTTAATGTAGACTTCATTGCTAGTTCATTGACAAGAGCTGTTTAGCTGACTGTTTAGCATACTGTAACACCGTTTCTATTTTGACACAAGTCATAATGActgactttttaaatttattatgagGAATTAAGCATAAATGAGTCAACCTGAATGCATGACGAAACAAAGCCAAATGAAAGTTGTCCATTTTCAACAGGCAGCTCATTgagaatcattttatttatattaagttaaTGATATACacgttttctaaataaaaaaataagatggaAGAAAATGAAGGCCGCAACGTTCATTGCCATTCCCTTTAACACAGAACTGCATTGTATTTTAGAAAAATTTAATTCCTCTATCAATGTTGTCATAAGAATATGATTGGgattttcactcattcatttttttttcagcttagtccctttattattaaggGGTCAGTCACCATAGCAGAATGTACCActaacctatccagcacatgttttacgtgtTTAACGGATGCCCATCCAGCAGCAACTGATTGGGATTTGTTTCATAGTATTTTAGTAATAGAACGTTTTAAATGAGGGAAAGCCATTGTTTTCATAACTCTATTATAGGAGAAATCTTTGAATCTTTTCAAGTGCATGTctacagatttgttttgttttggacaTCTGTGTCAAACACTTTGGAGAACCACTTTTAAGAGTCTGTGAATAATTTTATATTTCTCACTTTACTTTGGGaagtatttttatataattaaacgACACTTTCTCTACCCTTTTCCTG
>TCONS_00051852
GTTCTCGGGAGCAGCTTTCCGAACATCTGGTAAGCGCGGTTCCGCATGTGGTGACGGCGCATCACCCGCTTCCACCCGTCGCGTTTCCTGTTATGCCTCGCGCTGCTCGGTGTAAAAGTTCAGGCACATTCAGCGGCGGCGTGAGAGCAGCTCGCCAGCGCTCGTTTGCTCTGATATGAGGGTATCGTTCAGCTTCTTTGGCGTCTTTCTGTCTTTTCTCTGTGATCCTGTTCATGGAAATGGAGGAACAATTGGCTGCGCTAACAAGGGCGGCTGTGAAGTATACTGCTCAATTTGTGTGAATATAACAGCTCAAGAATGCTATGAAATACTGGTGAATCACTGGTGTAATTATCATTTTGTTTTGGCTATGGACTCCATGAACAGTACAGACTGGTGTTCACTGGAGAAAGTAAAAAGTGCATACAACAATTTCACAATGTGCACTGAGACTGTTGCTGACTGTCTGCTGGTTCCCTGGCCAAATCGATTTGTAGAACAGAAATTTGTGGATATCCATGCAACCTATTTTCACGATTGTCCCACAGAGGCACTGAGGGATCCCCCTCCCAGCATCATCCTTGCCCTTGTCATGACCCCCATATGCCTAATCCCTGTTATGGTGGTCCTAGTTGTTTTCAAGACTAAAAATGGAGACAGGAGGTCATGAAGCAGACTCCAGATGCAAGAAGATTTTGTTCCTGTTTATTCATCagctttatttctttttcattctggATGATGTCCCACCCAGGAATGAAATGAACTTGCACCTGGTATCATCCAGAATGGAGGATGAGCATTTGTTTTGGGAGTGTCCACTGACTGGAAAATGTTACTGTACTTTACTAAAATAATTGGTGGTTAGAAATGTGTATTTATCATTCACTTACAAACAAGATGCATTTCTGACAATTTACAGTATTAGTATGAAAATCACATCTCTATagcataaatatgttttgttgtcTTCATTCTGTGAATACACATAAATGTGAAATGAAGAGGTCAATTTGAAACATTCAGACGCAATGTGTTCATAAACAAGAGTACAAAACACAACACAGAACTACATACTGATCTGACTTTCCACTTTATGCACTGTAAGAATTATTTAATCCATGTTTTAATGTAGACTTCATTGCTAGTTCATTGACAAGAGCTGTTTAGCTGACTGTTTAGCATACTGTAACACCGTTTCTATTTTGACACAAGTCATAATGActgactttttaaatttattatgagGAATTAAGCATAAATGAGTCAACCTGAATGCATGACGAAACAAAGCCAAATGAAAGTTGTCCATTTTCAACAGGCAGCTCATTgagaatcattttatttatattaagttaaTGATATACacgttttctaaataaaaaaataagatggaAGAAAATGAAGGCCGCAACGTTCATTGCCATTCCCTTTAACACAGAACTGCATTGTATTTTAGAAAAATTTAATTCCTCTATCAATGTTGTCATAAGAATATGATTGGgattttcactcattcatttttttttcagcttagtccctttattattaaggGGTCAGTCACCATAGCAGAATGTACCActaacctatccagcacatgttttacgtgtTTAACGGATGCCCATCCAGCAGCAACTGATTGGGATTTGTTTCATAGTATTTTAGTAATAGAACGTTTTAAATGAGGGAAAGCCATTGTTTTCATAACTCTATTATAGGAGAAATCTTTGAATCTTTTCAAGTGCATGTctacagatttgttttgttttggacaTCTGTGTCAAACACTTTGGAGAACCACTTTTAAGAGTCTGTGAATAATTTTATATTTCTCACTTTACTTTGGGaagtatttttatataattaaacgACACTTTCTCTACCC

Function

symbol description
ramp2 Predicted to enable coreceptor activity. Predicted to be involved in several processes, including angiogenesis; protein localization to plasma membrane; and receptor internalization. Predicted to act upstream of or within intracellular protein transport and regulation of G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in cell surface. Human ortholog(s) of this gene implicated in hypertension. Orthologous to human RAMP2 (receptor activity modifying protein 2).

GO:

id name namespace
GO:0072659 protein localization to plasma membrane biological_process
GO:0006886 intracellular protein transport biological_process
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0032870 cellular response to hormone stimulus biological_process
GO:0001525 angiogenesis biological_process
GO:0031623 receptor internalization biological_process
GO:0015031 protein transport biological_process
GO:0008277 regulation of G protein-coupled receptor signaling pathway biological_process
GO:0006816 calcium ion transport biological_process
GO:0009986 cell surface cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0015026 coreceptor activity molecular_function

KEGG:

id description
ko04270 Vascular smooth muscle contraction
ko04030 G protein-coupled receptors

ZFIN:

id description
ZDB-GENE-080204-79 Predicted to enable coreceptor activity. Predicted to be involved in several processes, including angiogenesis; protein localization to plasma membrane; and receptor internalization. Predicted to act upstream of or within intracellular protein transport and regulation of G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in cell surface. Human ortholog(s) of this gene implicated in hypertension. Orthologous to human RAMP2 (receptor activity modifying protein 2).

Ensembl:

ensembl_id ENSDARG00000037895

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051851 False 1880 mRNA 0.37 6 36836711 36846496
TCONS_00051852 True 1885 mRNA 0.38 4 36836719 36839115

Neighbor

gene id symbol gene type direction distance location
XLOC_026614 abcc6b.2 coding downstream 12521 36807642 ~ 36824190 (-)
XLOC_026613 abcc6b.1 coding downstream 71846 36756313 ~ 36764865 (-)
XLOC_026612 FO744883.1 coding downstream 80562 36756033 ~ 36756149 (-)
XLOC_026611 abcc6b.1 coding downstream 86643 36744518 ~ 36750068 (-)
XLOC_026610 myh11b coding downstream 125003 36667802 ~ 36711708 (-)
XLOC_026616 cntnap1 coding upstream 57543 36904039 ~ 36944749 (-)
XLOC_026617 NA coding upstream 107129 36953625 ~ 36954088 (-)
XLOC_026618 CT573704.1 coding upstream 121375 36967871 ~ 36967993 (-)
XLOC_026619 NA coding upstream 122907 36969403 ~ 36972222 (-)
XLOC_026620 tubg1 coding upstream 213307 37059803 ~ 37082618 (-)
XLOC_026606 NA non-coding downstream 249575 36583100 ~ 36587136 (-)
XLOC_026600 NA non-coding downstream 513086 36320239 ~ 36323625 (-)
XLOC_026588 NA non-coding downstream 1262260 35565128 ~ 35574451 (-)
XLOC_026585 NA non-coding downstream 1888650 34947402 ~ 34948061 (-)
XLOC_026621 CT573704.2 non-coding upstream 229202 37075698 ~ 37075813 (-)
XLOC_026625 NA non-coding upstream 735026 37581522 ~ 37584807 (-)

Expression


Co-expression Network