LOC110531611 (LOC106577839)


Basic Information

Item Value
gene id LOC110531611
gene name LOC106577839
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 16048744 ~ 16087030 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614900.2
GGCAAGACAAAAAAACTACAGCCACCAAGatctaaaaaaaaatcatacaatagtTATACATAAGAATGGCATGGCCATGCCTTATATGGTTCGTTTTACCTTATGTGACCCTTTCCCCCATTTGAACACCCCCTCCTCAACGTTTTCTACACAGACATTATTGCGATCTCCAAATGCAGAAGACCCCGAGCAGACCACCAACAATCCAATAGCCGTGACCATGCCACCACAGCGCCGCCGAAACCAGCAAGTCAAACGGGGGTAAAGTAACTGATTTCAAGCCCATGCTCTGGGGTGCATGGTTGGAGAAAAAGTTTCCTTTCTTGGATGCAGAGTGAACTGACTGGCTTTGCAGAGACTAAGATAGATCATGCTGGTGGTTACACGATTGTCTTTCAGTTCATTTTTACGTGGGTGAACAAGTATAGCACCTCCCAGTTTCGTTGGTCATAGATCTGGTCTCCTCTTGTAGGCTACACTCATTGTATACGTACAACATGCATTGGGGTTTAGCGCGTACCTATAGCTGAGGAGGCTCGCTATCTGGCTTGTCCACAGGGCCCCCTCCTTCTCACCACATCCACCATCTCTCTTCTCTACTTCGGGCCGCAGGATAGTGCTGAAACATGCCGAGACACTTGCAGGGCAGCTCGTGTCCGTCGCAGGTCGGCGAGGCTGGTTCTGGTTTGTAGCCTAGCTCGATCTACTTTGTGGTGTGGTCTCCCCCACCATATCTGAATATAACTATTGCAAAGGAGGGAAACAAGTTAAAGAATAGAAATAACTGCCCAAGAACGAGGTGAAGAATACAGGAGATCTATACACCAATATTGGAATCGATGTTCGATCAAGCTACGACTATGGGCGATGGGATCGCCGAGGAccgcaaccaccaccaccaccgtggATCCAACTCTCTGTACGGTGACCGGATGGACAAATGCCATACCGAACTTGGGAGCAGGTCGCCGGTGCAGAGTACAACCGATACCGCGGGTACATCGGCGTCAACCCCCACCTCCTCCAGTGAAGACGGACATGATAAACTGGACCCAGTGGACCCAGACTACTGCCAGAGGATTTTAGTTCGAGATGCTAAGGGTACCATCCGGGAGATCGTGTTGCCAAAGGGTCTCGACCTCGACAGGCCAAAACGCACGCGGACCTCCTTCACTGCAGAGCAGCTCTACCGGCTCGAGCTCGAGTTCCAGCGCTGCCAGTATGTAGTCGGCCGAGAGCGCACTGAGCTGGCGAGGCAGCTGAACCTGTCTGAGACACAGGTTAAAGTGTGGTTCCAGAACCGCCGCACCAAGCAGAAGAAGGACACGACCAAGGACTCTGACAAGCACTCCTCCTCCACCTCGGAGTCACTAGCCACCTGTAACATTTTGCGTCTCCTCGAACAGGGCCGCCTCCTCTCCGCCCCGCCCCCCAATCCCCCATTGGGCCACCACCCAGGAAATGGCTCCCTATTGGTCAGCTCCGGAGGAGGCTCCTCCTCGCCAGGCGTGAGTAGGAGCACGCCACCAGGAAATGGCATTCATGGCATGGGTGGAACTTTCGGGCTGTCATTGCCTTCCCTGGGAGGAACTTCACCTTCGCCACGTCTGGGCATGCCGCCACCGCACTCACTGTGCTTCTCAATGCCGCTGCTAGGGGGCGCTCATCATGAACTGGCGTCTGGGTACGGGTGCGGGTCCTCGGCGTTTGAGCCATACATGCGGCTGGACAGGATCTCCAAGGATGGAGATCTAAGTGGGAAGAAGAGAGTTTCCTAAAAAGCGGCCATTAAGGGGTTgggatgacccccccccccctgcctctGGTCTCCCACCTATCCACCCACCAACATTGCTGTCCATCATTGGTTGGCACATCAACATCATTGCTCAGCTACTGCCTGCCACGGTGGGGGGGTTACGGAACAGGACCTTGTGGTGTGACAGACAGGGGTGATGATGAAGCCCGTCACACACAAAAACGTTGCTTGTGAATTATTTGGGAgaaatgaaatgtgtgtgtgattCATACGGAGAACAGACCTTTTTTTCTTAACGCTTCTCCTCCTTTGTTCACTTtgtccagtcagtgtgtttgtgtgatcgttctcttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttcccataGTATGTTTTTTAAAAGCCTGACATTGTAGAAAACTGAGTCAGTGTAAGTGAATAAGCGTGATGTCGTCTGTagattacattacaatacaaagGAGTGCAACCAGTTACCCCTTTAGCATATTACATACCTTCCAGCAAAATTACCAGGTTTCCCATCATGTGGCAGTTTTCTGCCAGAGCGTTCCAAGTAAAATAATCATACTCGTTAGCAGTTTCTAATGTTAATTTGCACTGTATAGTGTCCAACACTGATTCCTGTAAATTCTGTATTTTGTtggttgtgtgtgtatttaaaaaaaatgtggacAAGTAATATGTGAACTAAAGCTAGTCCTAGGTCAAATCCATGCTATGAAGAAGAAAAAGCAGTTGAGAAAAGGTACTGGGGGTTACAGTATGGCCTTGCCAAAGTAACGGGTTAGCAATAGCGCCGTTATCCTGGCCCCTGCTCTGCGCTACGTCCTCACGTCGTCGTGTCGTCCAATCAACTGGAGGAAATCCAGGTCAACCTGAGGagcttgacctctgacctctaaccccctgACCTTTTATCCACTCCCATGAGATTAACTCTTGATGTGTAATTCACCGGTGACAGTATCACTCCGTATGCTTTACCATTGGCTACAGAGACTACTCTCTGGTTTAAAGCCACCCACCCGCAGGTTGCCACAACAACCCCCGGTTTAGATCATCTCTGAATGTATGCAAACAAAAAGGGCTCATCCTCGTTGGGGGGCGGGGTGGGGGGTGAATTTGTCTTAGTGTACATAAAAAGCGACCCATCTGTCCCGTACATATCGCCCCCTGTGCTTGGTCTGGCCAAACACTCCTTATCCCAAATCTTGTGTTTGAATGTTGTTCACGTAGGTTtggtgcacacacatacacatacacacacacacacacacacacatacacaaacacacacacacagacagaatacTGTAGGATGCAGTAGGCATCGTCTCTTTTAAACTGGTTTCTTCTCTCAAGTCATAATAAGCTTTTTTTCATGTATATGTTTTCTCAGATTGGTACGTTCAATGGCTTCTTTTTCCCCTTTCCCTTTTTATTATCTAACAATTATATTTGGCTATTCCTTCCTAGACCCTCTCCCGCGCTCAAGACTCGCTCATTCACTTTGATCTAAAGCACTTTATTTTCCTTGAAGATTTTTACATGatctcccatctccctctttTTTAATATAGTTTGTTGTCATGTGCTAGACCGTGAAAGTTATTTGAGATCTTGAGGTATCAGATATTCACAGGTTGTATCACCTATAGGTACAGTTCTAAACGCAGTGTACGCAGACTATCTATTAAGAAGACAGATTAAGGGTTAGTCAGAGATTCTGGATTCAGTTCAGACACGTTTCGATTATTTTCTCAAAGAGACTCGAAGCTCCAAGCCCTGGTCACTGTAGTTCGACCTCAGTTTGTCAATGTTAACTAGAGTTATCTCCACTGGGTTTTTTCACAACTTTCTATTTCTCACCTCTAGCTTGGTGGTTTTCctattcatcggggcatggactccacaaggtctcgaaagcattccacaggaattctggcccatgttgactccaatgcttcccacagttgtgtcaagttggctggatgtcctttaagtggtagaccat

Function

NR:

description
ventral anterior homeobox 2-like

GO:

id name namespace
GO:0061386 closure of optic fissure biological_process
GO:0090259 regulation of retinal ganglion cell axon guidance biological_process
GO:0021554 optic nerve development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030900 forebrain development biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:1902254 negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614900.2 True 3834 mRNA 0.48 3 16048744 16087030

Neighbor

gene id symbol gene type direction distance location
LOC110531610 LOC106577838 coding downstream 18846 15991941 ~ 16029898 (-)
trnal-cag-5 NA coding downstream 35126 16013536 ~ 16013618 (-)
LOC110531609 LOC106577837 coding downstream 68943 15951928 ~ 15979801 (-)
LOC110532935 LOC106577836 coding downstream 157475 15867906 ~ 15891269 (-)
LOC118966003 NA coding downstream 191538 15854217 ~ 15857206 (-)
LOC110531612 LOC106577840 coding upstream 8932 16095962 ~ 16117909 (-)
trnak-cuu-4 NA coding upstream 46015 16133045 ~ 16133117 (-)
trnan-guu-3 NA coding upstream 46575 16133605 ~ 16133678 (-)
gba2 gba2 coding upstream 99227 16186257 ~ 16220121 (-)
LOC118966005 msmp coding upstream 143628 16230658 ~ 16232360 (-)
G775603 NA non-coding downstream 1451 16045612 ~ 16047293 (-)
G775602 NA non-coding downstream 4952 16043489 ~ 16043792 (-)
G775600 NA non-coding downstream 6001 16042380 ~ 16042743 (-)
G775599 NA non-coding downstream 6411 16041968 ~ 16042333 (-)
G775596 NA non-coding downstream 10834 16037523 ~ 16037910 (-)
G775645 NA non-coding upstream 33237 16120267 ~ 16127928 (-)
G775650 NA non-coding upstream 41763 16128793 ~ 16129615 (-)
G775651 NA non-coding upstream 43719 16130749 ~ 16131239 (-)
G775653 NA non-coding upstream 45279 16132309 ~ 16132581 (-)
G775656 NA non-coding upstream 50542 16137572 ~ 16137787 (-)
G775532 NA other downstream 135450 15912836 ~ 15913294 (-)
G775139 NA other downstream 184910 15862320 ~ 15863834 (-)
LOC110531603 groa other downstream 261138 15781909 ~ 15787666 (-)
G774954 NA other downstream 422824 15625202 ~ 15625920 (-)
G774702 LOC106577875 other downstream 687425 15352307 ~ 15361319 (-)
LOC110531626 LOC106608856 other upstream 740023 16827053 ~ 16828583 (-)
G776294 NA other upstream 778437 16865467 ~ 16866034 (-)
G776340 LOC106577790 other upstream 922982 17010012 ~ 17014685 (-)
G776355 NA other upstream 938350 17025380 ~ 17025813 (-)
G776461 NA other upstream 1158404 17245434 ~ 17245797 (-)

Expression


Co-expression Network