LOC118966005 (msmp)


Basic Information

Item Value
gene id LOC118966005
gene name msmp
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 16230658 ~ 16232360 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987440.1
TCTAGAACTACACAACTAGAACTAAAGAACATGAAGATGATGGACTCCATTGTTGGGAGAAACTGGACACTGACCTTCCTGGctgggactctgctctggacCACCCGCTGCCTAGCTGCTCCCATGCAGTGTCACTTCAACTCTAAAGGCCTGTGTGTGTACGAGGGGAGACACTACTCCCTGGGGGAGTCCTGGATGGAGGACGGCTGTCTGCAGTGTACCTGTCTGCACCCCATGGGCGTCGGCTGCTGTGAGACGGTGCATCGCCCGGTAGACTTCCCAGCTTGGTGTGAGGTTCGGGTGGACGCTCTAGCCTGTAAAGTGACCCTGGTGCAGAGCGCTGACCCTCGCCTGCCCTGCCTCCCTGGGAATGGACACAACCTGGGCCCCAGCCACAGCTCACGGGACAACAACTACCTGCAGATGGTGGAGTAGACAGGGACCCCGGTCAGACAGTGGAGGGACGGCCTCATTGGAATGAATGtcgccattacaatgagcccgtacTCCGATTTAAAGTGGCAACAGCCTCCACTGGAGTCGGGAAGATCAACTCCCTCCACCGCCGACCATCTCCATCCATGTCAGTGTAATCCTAACGGTCCATTCTCATTTCAGTTGCAGATCAGTGATCAGTTAACATTTAAACCGCATGAATATTACAATACCTTAAGCAGTAAATGATACTCAGTTGGAAAGCAGAGGTGAGCCCACATAATGGAATCCCTCATTTACCACCCTGTAATGCACTACTGTAAAGCTTTTATAGTAATATATAACTATTGTTGTATTTCTTCTGTCCCGTCTTGCAGTTATCCTCTAAATAAAATTCTTGTTGCGTGAAAGTCATTTGTTGATTGTGTGGATAAAAGGACTCCTTTCAGATTCATGTGGATTTGAATTTGACATTTTAATTCCTGATTCACATTGAACAGTGTTTCATTAACAATTTCAAAAATACAGTTGTACAGCATATAGCCTTTGAAAATAAAACACACTATTCATGTGACAAAGCAATGGACTCTTTTGGGGGGTTTTGAA

Function

symbol description
msmp Enables CCR2 chemokine receptor binding activity. Involved in lymphocyte chemotaxis and monocyte chemotaxis. Located in cytoplasm and extracellular space.

NR:

description
prostate-associated microseminoprotein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987440.1 True 1041 mRNA 0.48 3 16230658 16232360
Loading

Neighbor

gene id symbol gene type direction distance location
gba2 gba2 coding downstream 10537 16186257 ~ 16220121 (-)
trnan-guu-3 NA coding downstream 96980 16133605 ~ 16133678 (-)
trnak-cuu-4 NA coding downstream 97541 16133045 ~ 16133117 (-)
LOC110531612 LOC106577840 coding downstream 112749 16095962 ~ 16117909 (-)
LOC110531611 LOC106577839 coding downstream 143628 16048744 ~ 16087030 (-)
LOC110531616 tesk1 coding upstream 31104 16263464 ~ 16289868 (-)
LOC110531619 LOC100380775 coding upstream 194728 16427088 ~ 16440148 (-)
LOC118966165 NA coding upstream 323435 16555795 ~ 16573892 (-)
LOC118966166 NA coding upstream 347899 16580259 ~ 16581805 (-)
LOC110532940 LOC106608858 coding upstream 362703 16595063 ~ 16751294 (-)
G775668 NA non-coding downstream 40706 16189196 ~ 16189952 (-)
G775657 NA non-coding downstream 80045 16150132 ~ 16150613 (-)
G775656 NA non-coding downstream 92871 16137572 ~ 16137787 (-)
G775653 NA non-coding downstream 98077 16132309 ~ 16132581 (-)
G775651 NA non-coding downstream 99419 16130749 ~ 16131239 (-)
G775700 NA non-coding upstream 18609 16250969 ~ 16251198 (-)
G775702 NA non-coding upstream 22431 16254791 ~ 16255888 (-)
G775706 NA non-coding upstream 35635 16267995 ~ 16271059 (-)
G775717 NA non-coding upstream 72781 16305141 ~ 16305527 (-)
G775722 NA non-coding upstream 79463 16311823 ~ 16312024 (-)
G775532 NA other downstream 317364 15912836 ~ 15913294 (-)
G775139 NA other downstream 366824 15862320 ~ 15863834 (-)
LOC110531603 groa other downstream 443052 15781909 ~ 15787666 (-)
G774954 NA other downstream 604738 15625202 ~ 15625920 (-)
G774702 LOC106577875 other downstream 869339 15352307 ~ 15361319 (-)
LOC110531626 LOC106608856 other upstream 594693 16827053 ~ 16828583 (-)
G776294 NA other upstream 633107 16865467 ~ 16866034 (-)
G776340 LOC106577790 other upstream 777652 17010012 ~ 17014685 (-)
G776355 NA other upstream 793020 17025380 ~ 17025813 (-)
G776461 NA other upstream 1013074 17245434 ~ 17245797 (-)

Expression

LOC118966005(msmp) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.25.
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LOC118966005(msmp) Expression in each Bioproject

Bar chart with 14 bars.
LOC118966005(msmp) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 25.
End of interactive chart.

Co-expression Network