LOC110531619 (LOC100380775)


Basic Information

Item Value
gene id LOC110531619
gene name LOC100380775
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 16427088 ~ 16440148 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987447.1
ATGGCGTCGATGAAGGACAGCGACACCGGTCTGTGGCTCCATAATAAACTAGGATCAACAGACGAGCTTTGGGCGCCTTCTAGTATTGCTTCACTCCTCACCGTTTCAGTTATCGACAATATACGGTTGTGTTTTTCGAGTTTGTCGCCTCCAGTTAAGCTAAAACTATTGCTAGGGATGCTGCATCTTCCCAGGCGGACTGTTGACGAGATGAAGGAGGCCCTGTCCGAGATCATCCAGCTGGCCACGGTGGACTCTGAGCCCTGGGTACTGATGGTGGCAGACATCCTAAAGTCCTTCCCTGAGACGGGCTCCCTCAACCTGGACCTGGAGGAGCAGAACCCCAATGTACAGGACATCCTGGGGGAGCTCCGGGAGAAAGtgagtgagtgtgaggcGTCAGCCATGCTCCCTCTGGAGTGCCAGTACCTGAACAAGAGCGCCCTGACCACGCTGGTGGGCCCACTCACGCCCCCCGTCAAACACTTCCAGCTGAAGAGGAAGCCCAAGAGTGCCACGCTCAGGGCAGAGCTGCTGCAGAAATccacagAGACGGCTCAACAGCTGAAGAAGACAGCGGGAGTGCCTTTCCACGCCAAAGGAAGAGGCCTGGTCAAGAAGATGGACACCACCACACCCCTGAAGGGGATCCCCAAAGCCCCGTTCCGCAGCCCCACCACCCCCAGCATGTTCAGCCCCCCCAGCAACCGCACACCCATCGCCCCTGCACGGACACCCCTGCGCAAGGAGAGGGGGGTCAAGTTGTTAGACATCTCAGAGCTGGATATGGTGGGAGCTGGTAGAGAGgcaaagaggagaagaaagactTTGGAAACAGAGGCTGGGGAGAAAGCTGCTAAAGAGGAGGCTGTGGTGGAGAACGCTACACCAGACTATGCTGCTGGACTGGTATCTACACAGAAACTGGGTGCGTTGAACAACGAGAGTGCTCTGCCGTCTACGAGCTACCTGCCGTCTACCCCCAGTAtggtcccctcctcctcctacatTCCCAGTTCAGAGACACAGCCAGCGAACGCAGGTGGTTTGGGACGTGACGCCCTGCAGTCGGGTCGCCAGCCTGAGGAGTCGGCCACGCCCGGCGCTGCCGCCACCACCACCCTCCCGGGCCAGTTCAAACAGAGGACGCCCATGTACAACGCCAGCAACACTGCCACCAGCCCCACCGCTCCCGCCTCGCCCAGCACGCCAGCCAGCACCCCTGCCAGCAGCAACGGCCCCCCGGCTGCCGCCACCGCCACACAGCCCGAGACCCCCACCACACAGCCCCCGACGCCCACGCCCCAGCAGCCCCAGCCCAAGAAGAACCTCTCGCTCACGAGAACCCGTGTCCGGAGCAGGGGGACATTATCCAGATAAAGCTGAGTGAACACACAGAGATCCTGCCCAAGGCAGATGGCACGGGCAGCACCACCATGCTGGTGGACACAGTGTTTGAGATGAACTACTCCACAGGACAGTGGACCCGCCTCAAGAAGTACAAACCAATCACCAACGCCTCCTGAGGTGGCTGCTGGCCTGCCTGTCGGGACTaaacatacatgcatacatacatacatgcatgcatcaACACACAGACCAAATCTTGCTCTGGTGGACAGGgacttgtcacacacacacacttgtgcatACACATGGGCCAAATTCAGTGCGTGAGGGGCTAGGGAGGATTGTGTGGGAGGGATAGGGGGGTATGGCTCACTCTTTCAAAGTTCCTGCATTGACAGGCAGGGGTATCCTCaagactatctctctctctcccccccctcccattggtttgtttttctgttttgtttATATGTCCCCTCAGATTCCTGGATGTTTGGTAAGGGGAGGGGTACAAAGTTGTACCTTATTTTGATAAGACAACTGTTAACACTTGCTTTACTATTAAAGGTACAAGCATGCCACACTA
>XM_036987446.1
TTTAGATGGGATTATGCAACAGGCAGCCTTGACCGAGTTTCTAGCTGATGTTTCCTGAGCGGGAAGTATAGTTGTAACGTCAATGGACACCATGCTTACAAGCTGTTTCAAATGTATACTTAGCTCGTTAGCCGCAGATATGGCGATGCAGACAGTCAACATCATTCATTACAGTGTTCTCTACTCAAGTTAAACCACCGATAGCCAGCAGTCCGCATCGATCGCTTCCTTGGTTAGCTAGATAGCTGCTAACGTCAGCTGTGTAGATGAAGGAGGCCCTGTCCGAGATCATCCAGCTGGCCACGGTGGACTCTGAGCCCTGGGTACTGATGGTGGCAGACATCCTAAAGTCCTTCCCTGAGACGGGCTCCCTCAACCTGGACCTGGAGGAGCAGAACCCCAATGTACAGGACATCCTGGGGGAGCTCCGGGAGAAAGtgagtgagtgtgaggcGTCAGCCATGCTCCCTCTGGAGTGCCAGTACCTGAACAAGAGCGCCCTGACCACGCTGGTGGGCCCACTCACGCCCCCCGTCAAACACTTCCAGCTGAAGAGGAAGCCCAAGAGTGCCACGCTCAGGGCAGAGCTGCTGCAGAAATccacagAGACGGCTCAACAGCTGAAGAAGACAGCGGGAGTGCCTTTCCACGCCAAAGGAAGAGGCCTGGTCAAGAAGATGGACACCACCACACCCCTGAAGGGGATCCCCAAAGCCCCGTTCCGCAGCCCCACCACCCCCAGCATGTTCAGCCCCCCCAGCAACCGCACACCCATCGCCCCTGCACGGACACCCCTGCGCAAGGAGAGGGGGGTCAAGTTGTTAGACATCTCAGAGCTGGATATGGTGGGAGCTGGTAGAGAGgcaaagaggagaagaaagactTTGGAAACAGAGGCTGGGGAGAAAGCTGCTAAAGAGGAGGCTGTGGTGGAGAACGCTACACCAGACTATGCTGCTGGACTGGTATCTACACAGAAACTGGGTGCGTTGAACAACGAGAGTGCTCTGCCGTCTACGAGCTACCTGCCGTCTACCCCCAGTAtggtcccctcctcctcctacatTCCCAGTTCAGAGACACAGCCAGCGAACGCAGGTGGTTTGGGACGTGACGCCCTGCAGTCGGGTCGCCAGCCTGAGGAGTCGGCCACGCCCGGCGCTGCCGCCACCACCACCCTCCCGGGCCAGTTCAAACAGAGGACGCCCATGTACAACGCCAGCAACACTGCCACCAGCCCCACCGCTCCCGCCTCGCCCAGCACGCCAGCCAGCACCCCTGCCAGCAGCAACGGCCCCCCGGCTGCCGCCACCGCCACACAGCCCGAGACCCCCACCACACAGCCCCCGACGCCCACGCCCCAGCAGCCCCAGCCCAAGAAGAACCTCTCGCTCACGAGAGACCAGATGTATGCTGCTCAGGAAATGTTCAAGACGGCCAACAAGGTTACCAGACCAGAGAAAGCACTCATCCTGGGCTTCATGGCCGGATCCAGAGAGAACCCGTGTCCGGAGCAGGGGGACATTATCCAGATAAAGCTGAGTGAACACACAGAGATCCTGCCCAAGGCAGATGGCACGGGCAGCACCACCATGCTGGTGGACACAGTGTTTGAGATGAACTACTCCACAGGACAGTGGACCCGCCTCAAGAAGTACAAACCAATCACCAACGCCTCCTGAGGTGGCTGCTGGCCTGCCTGTCGGGACTaaacatacatgcatacatacatacatgcatgcatcaACACACAGACCAAAT
>XM_021614919.2
AATGCCCGAACTCAATACACTTCTTTTTCCAAGATGGCGTCGATGAAGGACAGCGACACCGGTCTGTGGCTCCATAATAAACTAGGATCAACAGACGAGCTTTGGGCGCCTTCTAGTATTGCTTCACTCCTCACCGTTTCAGTTATCGACAATATACGGTTGTGTTTTTCGAGTTTGTCGCCTCCAGTTAAGCTAAAACTATTGCTAGGGATGCTGCATCTTCCCAGGCGGACTGTTGACGAGATGAAGGAGGCCCTGTCCGAGATCATCCAGCTGGCCACGGTGGACTCTGAGCCCTGGGTACTGATGGTGGCAGACATCCTAAAGTCCTTCCCTGAGACGGGCTCCCTCAACCTGGACCTGGAGGAGCAGAACCCCAATGTACAGGACATCCTGGGGGAGCTCCGGGAGAAAGtgagtgagtgtgaggcGTCAGCCATGCTCCCTCTGGAGTGCCAGTACCTGAACAAGAGCGCCCTGACCACGCTGGTGGGCCCACTCACGCCCCCCGTCAAACACTTCCAGCTGAAGAGGAAGCCCAAGAGTGCCACGCTCAGGGCAGAGCTGCTGCAGAAATccacagAGACGGCTCAACAGCTGAAGAAGACAGCGGGAGTGCCTTTCCACGCCAAAGGAAGAGGCCTGGTCAAGAAGATGGACACCACCACACCCCTGAAGGGGATCCCCAAAGCCCCGTTCCGCAGCCCCACCACCCCCAGCATGTTCAGCCCCCCCAGCAACCGCACACCCATCGCCCCTGCACGGACACCCCTGCGCAAGGAGAGGGGGGTCAAGTTGTTAGACATCTCAGAGCTGGATATGGTGGGAGCTGGTAGAGAGgcaaagaggagaagaaagactTTGGAAACAGAGGCTGGGGAGAAAGCTGCTAAAGAGGAGGCTGTGGTGGAGAACGCTACACCAGACTATGCTGCTGGACTGGTATCTACACAGAAACTGGGTGCGTTGAACAACGAGAGTGCTCTGCCGTCTACGAGCTACCTGCCGTCTACCCCCAGTAtggtcccctcctcctcctacatTCCCAGTTCAGAGACACAGCCAGCGAACGCAGGTGGTTTGGGACGTGACGCCCTGCAGTCGGGTCGCCAGCCTGAGGAGTCGGCCACGCCCGGCGCTGCCGCCACCACCACCCTCCCGGGCCAGTTCAAACAGAGGACGCCCATGTACAACGCCAGCAACACTGCCACCAGCCCCACCGCTCCCGCCTCGCCCAGCACGCCAGCCAGCACCCCTGCCAGCAGCAACGGCCCCCCGGCTGCCGCCACCGCCACACAGCCCGAGACCCCCACCACACAGCCCCCGACGCCCACGCCCCAGCAGCCCCAGCCCAAGAAGAACCTCTCGCTCACGAGAGACCAGATGTATGCTGCTCAGGAAATGTTCAAGACGGCCAACAAGGTTACCAGACCAGAGAAAGCACTCATCCTGGGCTTCATGGCCGGATCCAGAGAGAACCCGTGTCCGGAGCAGGGGGACATTATCCAGATAAAGCTGAGTGAACACACAGAGATCCTGCCCAAGGCAGATGGCACGGGCAGCACCACCATGCTGGTGGACACAGTGTTTGAGATGAACTACTCCACAGGACAGTGGACCCGCCTCAAGAAGTACAAACCAATCACCAACGCCTCCTGAGGTGGCTGCTGGCCTGCCTGTCGGGACTaaacatacatgcatacatacatacatgcatgcatcaACACACAGACCAAAT

Function

NR:

description
negative elongation factor A-like isoform X1

GO:

id name namespace
GO:0034244 negative regulation of transcription elongation from RNA polymerase II promoter biological_process
GO:0006414 translational elongation biological_process
GO:0032021 NELF complex cellular_component
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K15179 WHSC2, NELFA; negative elongation factor A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987447.1 False 1936 mRNA 0.57 10 16427088 16440115
XM_036987446.1 False 1761 mRNA 0.58 11 16427419 16439854
XM_021614919.2 True 1738 mRNA 0.58 11 16427419 16440148

Neighbor

gene id symbol gene type direction distance location
LOC110531616 tesk1 coding downstream 137220 16263464 ~ 16289868 (-)
LOC118966005 msmp coding downstream 194728 16230658 ~ 16232360 (-)
gba2 gba2 coding downstream 206967 16186257 ~ 16220121 (-)
trnan-guu-3 NA coding downstream 293410 16133605 ~ 16133678 (-)
trnak-cuu-4 NA coding downstream 293971 16133045 ~ 16133117 (-)
LOC118966165 NA coding upstream 115647 16555795 ~ 16573892 (-)
LOC118966166 NA coding upstream 140111 16580259 ~ 16581805 (-)
LOC110532940 LOC106608858 coding upstream 154915 16595063 ~ 16751294 (-)
LOC110531626 LOC106608856 coding upstream 386985 16827053 ~ 16828583 (-)
LOC110531628 cideb coding upstream 446380 16886528 ~ 16891710 (-)
G775758 NA non-coding downstream 51367 16375070 ~ 16375721 (-)
G775727 NA non-coding downstream 55240 16321089 ~ 16371848 (-)
G775748 NA non-coding downstream 68291 16357095 ~ 16358797 (-)
G775741 NA non-coding downstream 76401 16344650 ~ 16350687 (-)
G775734 NA non-coding downstream 91185 16335407 ~ 16335903 (-)
G775827 NA non-coding upstream 61342 16501490 ~ 16501719 (-)
G775828 NA non-coding upstream 62964 16503112 ~ 16503422 (-)
G775836 NA non-coding upstream 79386 16519534 ~ 16519852 (-)
G775839 NA non-coding upstream 86288 16526436 ~ 16526704 (-)
G775840 NA non-coding upstream 88408 16528556 ~ 16528810 (-)
G775532 NA other downstream 513794 15912836 ~ 15913294 (-)
G775139 NA other downstream 563254 15862320 ~ 15863834 (-)
LOC110531603 groa other downstream 639482 15781909 ~ 15787666 (-)
G774954 NA other downstream 801168 15625202 ~ 15625920 (-)
G774702 LOC106577875 other downstream 1065769 15352307 ~ 15361319 (-)
G776294 NA other upstream 425319 16865467 ~ 16866034 (-)
G776340 LOC106577790 other upstream 569864 17010012 ~ 17014685 (-)
G776355 NA other upstream 585232 17025380 ~ 17025813 (-)
G776461 NA other upstream 805286 17245434 ~ 17245797 (-)

Expression


Co-expression Network