LOC110533002 (LOC106577819)


Basic Information

Item Value
gene id LOC110533002
gene name LOC106577819
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 16440652 ~ 16444014 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021617139.2
agtacagtatatgcatatgagatgagtaatgtagggtatgtaaacattatattaagtggcattgtttaaagtggctagtgatccatttttttttacatctttaaGGTTATGCAACTAAAGATGCTAAAATTAGTGCTGTGATTAAATTAGCCTATAAGACATGTGACCAACATAGCGAACCAGAGAGGCCAACATTTCATTTGCAATGAATAAAACAATTTAGCATCATTTTACGTGTTTTTGGGAGGGACAATCCGTTCAGAGGGTTTTATACGCATGCGCTTTCTGTCCATCGAATTCATATTCAACACAATCGTCTCTTCATTATCACACACAGTGAGTAGGCCTAGATTTGAATGCttctgtaaccgatgtgaaatggctagctatttagcggggtgcgcgctaatagcgtttcaatcggtgacgtcactctctCTGAGCCCTTGAGGTAGTtgttccctttgctctgcaaaGCCGCGGCTTTTGTGAAGCTATGGGTgacgatgcttcgtgggaggcagttgttgatgtgtgcagagggtccctggttcgatatataaacatatatatataaatgtgtgtATGTAGGCCTATATAATGGTGTGAAATAAACAGTATATGTTATATAGGATGAAATAGACAATATGTACAgtaagttatataggatgagtcTTGAATAAAATTAAGTATGTATAtgcatatgaagtgggtaaaacagtaggcctatgtaaacatgtatttttttatttataaattgaacttttatttaactaggcaagtcagttaagaacaaattattattaacAATGACagtctacaccggccaaacccggacgacgtttggccaattgtgcgccgccctatgggactcccaatcaccgccggttgtgatacagcctggattcaaaccagggtgtttGTCGTGATGCCCATAGTactgagatgcggtgccttagaccgctgcgccacttgggaccCCTAGTGAGTCTTTTGCTGAGCAAACATAGCCTACAGTCGTTTTCATCTAGCCTACCAATTTCGTAATATGATAGCTGCCTATCCTAAAGTTTCAAAGGCTGAAATTCGCTCTCTCCGTTTGCCAGGTCTTCCTCTGGACATGATGCACCGCAGTATGGCATCGAGCGGCTATTTGAAAGCGGTGATGCTGCTCTTAGCCGTGCAGCTGCTGTCTTTTAGGCCAGGTTTTGGCGAGCAGGAGACGGGGAAGGCAATACCCGCAGAAAGACGTCCCTGTGTGGACTGCCATGCATTTGAATTCATGCAGAGGGCACTGCAAGACCTCAAGAAGACTGCTTTCAAGCTCGATGCCCAGACTGAGACCCTGGCGTTGAGGGCAGTGAGGCGAGCCTTGTGTGGATGCACGCCCACTAATACCCTGCACTGAGTTAAGTAGTGATGTGCCCTCACCATGGCAACCGACTCCACACCCACTATTACTGGACACCTTCTTTAAACTGCCTGGACTAGACAGATGTCTCTGAGCCTTCTTCTATggaatattgtaaaaaaaaaaaattaaataatttgTACAACA

Function

NR:

description
neuropeptide-like protein C4orf48 homolog isoform X1

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021617139.2 True 1558 mRNA 0.43 3 16440652 16444014

Neighbor

gene id symbol gene type direction distance location
LOC110531617 NA coding upstream 61075 16366488 ~ 16379577 (+)
LOC110532939 NA coding upstream 98135 16315734 ~ 16342810 (+)
LOC118966164 NA coding upstream 130915 16308133 ~ 16309737 (+)
LOC110532936 LOC106577844 coding upstream 190071 16233342 ~ 16250864 (+)
rgp1 rgp1 coding upstream 209845 16220150 ~ 16230807 (+)
LOC110531620 LOC106577818 coding downstream 10891 16454905 ~ 16473400 (+)
LOC110531621 LOC106577824 coding downstream 138395 16582409 ~ 16588385 (+)
LOC110531622 LOC106577817 coding downstream 145201 16589215 ~ 16593605 (+)
LOC110531623 LOC106577803 coding downstream 333520 16777534 ~ 16821342 (+)
LOC110531624 LOC106577801 coding downstream 384772 16828786 ~ 16839453 (+)
G775406 NA non-coding upstream 12978 16382345 ~ 16427674 (+)
G775426 NA non-coding upstream 22510 16416137 ~ 16418142 (+)
G775394 NA non-coding upstream 87167 16352128 ~ 16353485 (+)
G775373 NA non-coding upstream 133675 16306762 ~ 16306977 (+)
G775372 NA non-coding upstream 134781 16305213 ~ 16305871 (+)
G775448 NA non-coding downstream 7081 16451095 ~ 16451626 (+)
G775477 NA non-coding downstream 59375 16503389 ~ 16503609 (+)
G775482 NA non-coding downstream 65827 16509841 ~ 16510040 (+)
G775490 NA non-coding downstream 75809 16519823 ~ 16520040 (+)
G775491 NA non-coding downstream 76093 16520107 ~ 16520494 (+)
G775306 NA other upstream 253202 16186276 ~ 16187450 (+)
G775142 NA other upstream 573944 15866089 ~ 15866708 (+)
LOC110531590 LOC106577858 other upstream 939576 15471215 ~ 15505643 (+)
G775945 NA other downstream 239180 16683194 ~ 16683491 (+)
LOC110532942 LOC106577806 other downstream 853041 17292470 ~ 17305629 (+)
G776487 NA other downstream 936611 17380625 ~ 17394121 (+)
G776818 LOC106600668 other downstream 1214183 17658197 ~ 17659145 (+)
G777111 NA other downstream 1557875 18001889 ~ 18002182 (+)

Expression


Co-expression Network