LOC110531620 (LOC106577818)


Basic Information

Item Value
gene id LOC110531620
gene name LOC106577818
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 16454905 ~ 16473400 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614920.2
CCGGCAACCCTTGGTCGTGCAGAAACGCTCAGGGTTGCAACAGAAACACCCGCCGCCTTTTTTCTTTGCATATTTATAAACGCATCGTATCCCATTTCTATTCTTACCAAGGTTCGAGTTATTTTTGAGGCCAGTTGCATGCATTGTTCGTCTCCAAAAATGGTTTGCGAGACAAAAATTGTTGCGGATGAGCACGATGCCATACAAGGGACAAAAAAAGATTCTATTATCCTTTCCTCCTCGCAAATGTGGACTTCTTCCACACCGGCACCGAATCCTCTCGAGGAAAATTATGTGAGGAAAGATACGGTTTTGATCCGGGAGTTTGAGCGCACGGACCATGTGGAAGTGCGCCGCATCTTTTATGAGGGGATAATGGAGAGAATACCCAACACCGCGTTCAGAGGCATATTACAGCAAAGTCAAACCCAATTCGTATATGCTCTTCTGACACTGATGTGCTTTGTTGTGACCAAATCCCTCGCGCTGACCTGCTGCGCGCCGTTCCTTCTCATGGGCGCGCGCTACttctacagccacaaagtcatccaCAGCTATCTGGCCTGCGCGCTCCACACTGACATGGCAGACATCGAGGAGTATTACATGAAACCTACAGGCTCAtgtttctgggtggcagtgctgGAAGGTCAGGTGGTCGGCATCGTGGCGGCGCAGGGCCGGGAGGATGACAACACGGTGGAACTACGCCGCATGTCGGTGGACTCGCGCTTCCGCGGCAAGGGCATTGCCAAGTTGCTGGGGCGTCGTGTGCTAGAGTTCGCCATGCATAACAACTACGCCGCCGTCGTCCTGGGAACCACCGCCGTCAAGATGGCTGCCCACAAGCTGTATGAGTCGCTGGGCTTCCGGCGGACCGGCGGTAGCGAGGATTACATGCTGCCCGGAATGAGCCGCTCGCCGCAAGAGAGGCTCTTCTTCCAGATCCGTTACCAACGCTACCGTCTGCAGCTCCGTGAGgagtgagggatgagagagagggagagagggatggagagagaaagggggagagagcaaCGACACCACCTCCTCGAGGCAGAGCCCCTCGCCCAACGAGCCTCGACCAAGTCCTTCTCCTCTGAcaactttatttattttatattattagaGTTTCTTCTTCttactactactgtttctattcATTCATCTAAAGTCACTAACTTTTTATTggttttagtttattttttatttattttttaaattttgaaTTTAGTGCCCCCCCCCCGAGTAcatttattgattttttttttaccctgtcctgttgtaaaaaataaaaaaaatccctaaCATA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K18309 NAT8L; aspartate N-acetyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614920.2 True 1312 mRNA 0.50 3 16454905 16473400

Neighbor

gene id symbol gene type direction distance location
LOC110533002 LOC106577819 coding upstream 10891 16440652 ~ 16444014 (+)
LOC110531617 NA coding upstream 75328 16366488 ~ 16379577 (+)
LOC110532939 NA coding upstream 112388 16315734 ~ 16342810 (+)
LOC118966164 NA coding upstream 145168 16308133 ~ 16309737 (+)
LOC110532936 LOC106577844 coding upstream 204324 16233342 ~ 16250864 (+)
LOC110531621 LOC106577824 coding downstream 109009 16582409 ~ 16588385 (+)
LOC110531622 LOC106577817 coding downstream 115815 16589215 ~ 16593605 (+)
LOC110531623 LOC106577803 coding downstream 304134 16777534 ~ 16821342 (+)
LOC110531624 LOC106577801 coding downstream 355386 16828786 ~ 16839453 (+)
LOC110531630 NA coding downstream 418943 16892343 ~ 16907677 (+)
G775448 NA non-coding upstream 3279 16451095 ~ 16451626 (+)
G775406 NA non-coding upstream 27231 16382345 ~ 16427674 (+)
G775426 NA non-coding upstream 36763 16416137 ~ 16418142 (+)
G775394 NA non-coding upstream 101420 16352128 ~ 16353485 (+)
G775373 NA non-coding upstream 147928 16306762 ~ 16306977 (+)
G775477 NA non-coding downstream 29989 16503389 ~ 16503609 (+)
G775482 NA non-coding downstream 36441 16509841 ~ 16510040 (+)
G775490 NA non-coding downstream 46423 16519823 ~ 16520040 (+)
G775491 NA non-coding downstream 46707 16520107 ~ 16520494 (+)
G775497 NA non-coding downstream 52572 16525972 ~ 16527089 (+)
G775306 NA other upstream 267455 16186276 ~ 16187450 (+)
G775142 NA other upstream 588197 15866089 ~ 15866708 (+)
LOC110531590 LOC106577858 other upstream 953829 15471215 ~ 15505643 (+)
G775945 NA other downstream 209794 16683194 ~ 16683491 (+)
LOC110532942 LOC106577806 other downstream 823655 17292470 ~ 17305629 (+)
G776487 NA other downstream 907225 17380625 ~ 17394121 (+)
G776818 LOC106600668 other downstream 1184797 17658197 ~ 17659145 (+)
G777111 NA other downstream 1528489 18001889 ~ 18002182 (+)

Expression


Co-expression Network