LOC110531622 (LOC106577817)


Basic Information

Item Value
gene id LOC110531622
gene name LOC106577817
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 16589215 ~ 16593605 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614924.2
ACACAATATGCAGCATTCATATAGTCAAACCAATTGTGGTCCCTTTTGATTCATTCCAGAATTTTTTTTGTTCAGGTATTCAATGCATTTGAATGACCCAAGTCTTGAGAAATAGCCTAATCTACACacaaaatatgaaaatgtatcaTTTGCATTGCTTGAAGCACAATATTTCTATTGTCATCCCCGTCAAGCAGTTGGCTCGTGGATCGCCCACGAGGGGCAGGGCTTATGCGCGGCTTTTATAAACCCGGCAGCGTCACTTCACACACTGAAAGCCGCTTGCTGTCAAAGGAGCTTAGTATTGTGTTGTAACAGACCGCCAATAAACCACCATCAACATGATTATCGAAATTGAAGATAAGgaTTCCTTCTTCAGTGCCCTGAAGGAAGCAGGAGACAAGCTGGTGGTAGTAGACTTCACAGCCTCCTGGTGCGGCCCCTGCAAGAACATTGCGCCCTTCTTCAAAGGGCTTTCGGAAAAACCAGAGAACAAGAATGTGGTTTTCCTCAAGGTGGACGTGGACGAGGCAGCGGATGTGGCCAAACACTGTGACATCAAATGCATGCCGACGTTCCATTTCTACAAGAATGAGAAAAAGGTGGATGATTTCTCTGGGTCCAACGAAGCCAAACTGGAGGAGAAGGTCAACACTCTGAGGTCATGAGGAAGAGGCTGACACGCACATCTGCACTGACGCTGTACAAACGCCACTACCAACCAACTGTCTTTAGACCGAACTCCCCCTTGAAGGAATAATTCCGCTATAGTCCCAATTCCCTCTCAAAGGACAGATTCCACCATATGTACAACAAAACATTGTTTTAATTCAATTATTTTTAAAATTGTTATTAAATGTTAATACCAAACCATGCCTCTAAATCCTCCAGTGTATTAGTCGTTCTTATTCAGGTCAGGAGTTTATCTCCATTTTTAAAAAGGACCATcatattttaatgtatttttatatATTAGAGCAATGCTGTTGGGATTTTGAATGTTCTGTCGAAGTGGGTGGATTCAATAAATTAAGATGAATGCTGA

Function

NR:

description
thioredoxin-like

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0006662 glycerol ether metabolic process biological_process
GO:0015035 protein disulfide oxidoreductase activity molecular_function

KEGG:

id description
K03671 trxA; thioredoxin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614924.2 True 1045 mRNA 0.42 5 16589215 16593605

Neighbor

gene id symbol gene type direction distance location
LOC110531621 LOC106577824 coding upstream 830 16582409 ~ 16588385 (+)
LOC110531620 LOC106577818 coding upstream 115815 16454905 ~ 16473400 (+)
LOC110533002 LOC106577819 coding upstream 145201 16440652 ~ 16444014 (+)
LOC110531617 NA coding upstream 209638 16366488 ~ 16379577 (+)
LOC110532939 NA coding upstream 246698 16315734 ~ 16342810 (+)
LOC110531623 LOC106577803 coding downstream 183929 16777534 ~ 16821342 (+)
LOC110531624 LOC106577801 coding downstream 235181 16828786 ~ 16839453 (+)
LOC110531630 NA coding downstream 298738 16892343 ~ 16907677 (+)
LOC110531629 LOC106577796 coding downstream 320465 16914070 ~ 16925975 (+)
acin1b LOC106577794 coding downstream 332607 16926212 ~ 16953584 (+)
G775887 NA non-coding upstream 8324 16580686 ~ 16580891 (+)
G775447 NA non-coding upstream 51126 16537707 ~ 16538089 (+)
G775504 NA non-coding upstream 53109 16535887 ~ 16536106 (+)
G775498 NA non-coding upstream 61509 16527476 ~ 16527706 (+)
G775497 NA non-coding upstream 62126 16525972 ~ 16527089 (+)
G775913 NA non-coding downstream 32790 16626395 ~ 16626659 (+)
G775918 LOC106577822 non-coding downstream 42511 16636116 ~ 16636634 (+)
G775924 NA non-coding downstream 46758 16640363 ~ 16641599 (+)
G775927 NA non-coding downstream 55977 16649582 ~ 16649886 (+)
G775928 LOC106577822 non-coding downstream 58207 16651812 ~ 16652122 (+)
LOC110532936 LOC106577844 other upstream 338351 16233342 ~ 16250864 (+)
G775306 NA other upstream 401765 16186276 ~ 16187450 (+)
G775142 NA other upstream 722507 15866089 ~ 15866708 (+)
LOC110531590 LOC106577858 other upstream 1088139 15471215 ~ 15505643 (+)
G775945 NA other downstream 89589 16683194 ~ 16683491 (+)
LOC110532942 LOC106577806 other downstream 703450 17292470 ~ 17305629 (+)
G776487 NA other downstream 787020 17380625 ~ 17394121 (+)
G776818 LOC106600668 other downstream 1064592 17658197 ~ 17659145 (+)
G777111 NA other downstream 1408284 18001889 ~ 18002182 (+)

Expression


Co-expression Network