LOC110531623 (LOC106577803)


Basic Information

Item Value
gene id LOC110531623
gene name LOC106577803
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 16777534 ~ 16821342 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987455.1
CTGGTGGTGAGAAGAGGAGGGGCTAGTGTGGAAAGGGGCGGTCCTACTGTACTCATAATATGAAGGGGACATGTATATTTACCCAATATCTTGCTCATTGTTTAGTCAAACCAAGCTGCAAGGATACCGCTGAAGACCTGAAGACCAGAAAGGACATTTTCAGGTTCAGTTTTTGGGTGGGAGACACAGTTGTGTGTTTTTCAACCAGTTTTAATGGTGCGTAAAGGGATGCTCTGAGTCGGGTCTCTGGAGCTCTCACCTGTAGTCAAGGAAGCAGTGAAAGACGTTTTAGTTTTGTTTCGAAACGAATATTTTGTGACAGAAGGGTTCTTTCGCAGTATGTCACTGGAATACGCCATTCTTGTTCACTAAATGGACTATTGAATACCTGTTACTTATTTGGTTATATATTTTcaacaatacttttttttttgtgtcatATGTCTAACAATTAAAATAGATTAACTGTGAAATATCACAACTTTGTTACTCAAATTAGACAGTCGCGTTAATAACGGTCAATACGAGATAAAAAGCTGTTATCTCATGTTTTTGTTGTCGTTGCCCGCAGTGCAAACTAGGCATTTTTCGTATTTTATCAACTGATTAGGTAGGCGAACTTGTTGCAATTTCCTTAGCGCTCAGGTAGTGCGCCAGTGCAACATTCTAACAGCAAATACATTGGTATTCTGGACAACATGAGAATACAGGTTTAAAAACAAGTTTACATGACGTGTAACTGCACTGATTTATTGTTATAAAAATTAACTATTTGCGGCAGTGCGTTGCCCATAACATCTGAAGGCTCGATTCGATTCGCGAGGTTTTGAATAGGCTACACCAGAATACTGCAACAAGTAAACAATTACTTGTATCTACTCATCTTCGACACTTTTGGGCGAAGTGCTGTGAAGTGTGCTGTGTGGTCTTACCGAAGCGCACGTCCAAGTGCTCTTTAGCTATCAATTTAGAGCGACCACAGGCACAGCTGCAGCGGCAAGTGTCACAGCGAGGACTGAACAACTCTATCACCAAAATGACGAACGGACCAAGGCAACGGGGCAGCGCAGCCGCGTCTGGCGGGGATGCTGTCTCCGAGTCCGGGAAGGAGTCAGGAGGGGTGGCTCTGAAGAAAGAGATCGGCCTTGTGAGCGCCTGCGGAATTATTGTTGGTAACATCATCGGGTCGGGCATCTTCGTCAGCCCTAAGGGTGTGATGGAGAACGCCAGTTCGGTGGGTCTGGCGCTGATCGTGTGGATCGTCACCGGCATCATCACGGCCATCGGGGCGCTGTGCTACGCCGAGCTGGGTGTCACCATCCCCAAGTCAGGGGGAGACTACGCATACGTCAAGGACATCTTCGGAGGACTGGCAGGgttCCTGCGTCTGTGGATCGCAGTGCTGGTGATCTACCCCACCAACCAGGCGGTGATCGCCCTCACCTTCTCCAACTACGTCCTACAGCCCCTCTTCCCAACCTGCTTCCCCCCGGAGAACGGACTGCGCCTGCTGGCTGGCGTCTGCCTACtgtTGTTGACGTGGGTGAACTGCTCCAGTGTGCGATGGGCCACCAGAGTCCAGGACATCTTCACAGCCGGCAAGCTGCTGGCCCTGGCTCTCATCATTATCATGGGCATCGTGCAGATCTGCAAGGGAGAGTACTATTGGCTGGAGCCAGCGAATGCCTTCGAGCCCTTCCAGGAGTACGACGTGGGACTGATAGCCCTGGCCTTTCTACAAGGCTCCTTCGCCTACGGGGGATGGAACTTCCTCAACTACGTCACTGAGGAGCTGGTCGACCCCTATGTGAATCTTCCTCGCGCCATCTTCATCTCCATCCCCTTGGTGACGTTTGTCTACGTATTCGCTAACATCGCCTACGTCACTGCCATGAGTCCTCAGGAGCTGCTGGCCTCCAACGCTGTTGCCGTGacttTTGGTGAAAAGCTGCTGGGAGTGATGTCATGGATCATGCCCATCTCTGTAGCTCTGTCCACCTTCGGAGGGGTTAACGGATCCCTCTTCACCTCCTCACGGTTGTTCTTTGCTGGAGCCAGAGAGGGCCACCTCCCCAGTCTTCTGGCTATGATCCATGTGAAGCGCTGCACCCCCATCCCTGCTCTGCTCTTCACTTGTCTGTCCACCCTGCTGATGCTGTGCACCAGTGACATGTACACCCTCATCAACTACGTGGGCTTTATCAACTACCTCTTCTACGGGGTCACTGTTGCCGGGCAGATTGTGCTGCGCATCAAGCAACCCGACATGCACCGACCAATCAGGatCAGTCTGGCATGGCCTGTGATCTATCTGTTGTTCTGGGCCTTCCTGCTCATCTTCTCCCTGTACTCTGAGCCCGTGGTGTGTGGCCTCGGTATGGCTATCATGTTGACTGGAGTACCTGTCTACTTCCTGGGTGTCTACTGGGACAACAAGCCCGCGTGCTTCAACACCTTCGTTGccaaGATGACCTACCTGGGCCAGAAGTTCTGTGTGGTGGTGTATCCAGGGGAGACGAAGGGAGGCGAGGAGGCAGGGAGCGGGGAGGAGTGCGAGCAGCTGAAGGAGTCGCGGGCTCCTCTCTCGCAGGAGGACGGCGAGACACAAAAGTCTGCAGACTGCTGAACACACACCTTGACTAACCCCCCAACACCCAACGCCtcaccatacacacacagacacacacaaactcagagAAACACACTCTCGTTGAGGTAGTCAAAGTTTCAGGTATATCACTATGGCAGAGGGGAGttaacacccacacactcacagactTGGAAACATTCAGTGACACACACTGTTATTTTAATGTGTTCAGAAGTCTGATTGTAGCTTTGTTTCAATCACGAATGCTGTGCCAAATAGAGAAACGGAGGAGATGGAGGTgggagggggtgggaggaggtgggaaggaggaggagataaaCGTTTAGTGGAGAGGGGAGATTATAGAACTATATCTGGTCATTACATGTTAGTGTGCCTCCTTTCGATGCTGCTTACTGTAGAAGACATATCCAACCTGACATCCTCACAGATACACACCTCTTTTCATCCCCTCGTTTTTTTTATTTACCCACTTGACAATAATAAGGATTCCTCTTTttcttccccttcctcttctttttcatcttcctcctcttcctccacacaCTCCCTGCACACTTCATGAGTGAGAGAGTGGCGGTCATTTTAAAGTACTCGTAGTGTACTGTGGCAGATTCATCATCAATATTGCTTGTGTCCGTTTGCATTTCTTTTTTGACACCTTTTGAATTTGCCTTGTCTTACTGAAAACACACCAAAGCTGGATTTTTTGATCGTCAAAAACATCAAATTAATATCAATTCATTTCATGTTCTATGTCAAATACACTAAATACTGTCTGTGTTTTTTAATTTTAACAACTGTgattccaaaatgtattttatatctgTGATAATTGTTTATATCATGTGTCATTGTTATTATTTTAGTTTTATTATGTTAGTTTTAGCGTGTGTTTTTTTTCTATTCAACATCATGCAACAGCGGAGGTATACATTTAAGAGCCTATGGGTAATCTGGTTCAGTGCCTGTCAGATCCTTGCCTGGTGCAAAAATCAACTCTTTTATCGCTCTAATTCTGATATATTCTGTACTTAGGTATTGGTCTATTTTTGTTATCATTGATGTTGACAGATTATTTTATTCTGATATTTTTAAAGAGCTAAGAAAACATTTAATGGAAAAGAATGGAGTGGCCATTTTGAATATTCCACTTTCACTCAGTGACTTCATTTTACTGGACACCTGAGAAAGATTTCATTAAAGACAGACAATCAACTCTACAGATGGACCGGACCGCCTGCTCCATGAAAGACTAGCAGTACAGACAGACTACAGTGCTAAACCTTTACAGATACTAACAAACAGAGAAGTCTTGAAAAAATATAAGGGTAGGCTAGCAGACTCTGAAGAGCATTTTGAGTAGGGTTCTCCGCAATATTGACCAGACATGCACAaactcacatgcacacaaacacacgtgaaCCTCCGCGGAGAGAATTGACACAAGTTTAATCATGTGTAGCTAAGCGTACTGTAATGTTGTGAATGAGGCCAACCAGTAGTGTTCCTGTGTTTTAATGTCAATGTCTATCATGAGGTTAATTCAGTATTTTTGTAAATTAAAACAGATCTATAAATCCACTCTA

Function

NR:

description
large neutral amino acids transporter small subunit 2-like

GO: NA

KEGG:

id description
K13781 SLC7A8, LAT2; solute carrier family 7 (L-type amino acid transporter), member 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987455.1 True 4200 mRNA 0.46 11 16777534 16821342
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110531622 LOC106577817 coding upstream 183929 16589215 ~ 16593605 (+)
LOC110531621 LOC106577824 coding upstream 189149 16582409 ~ 16588385 (+)
LOC110531620 LOC106577818 coding upstream 304134 16454905 ~ 16473400 (+)
LOC110533002 LOC106577819 coding upstream 333520 16440652 ~ 16444014 (+)
LOC110531617 NA coding upstream 397957 16366488 ~ 16379577 (+)
LOC110531624 LOC106577801 coding downstream 7444 16828786 ~ 16839453 (+)
LOC110531630 NA coding downstream 71001 16892343 ~ 16907677 (+)
LOC110531629 LOC106577796 coding downstream 92728 16914070 ~ 16925975 (+)
acin1b LOC106577794 coding downstream 104870 16926212 ~ 16953584 (+)
LOC118966195 NA coding downstream 106318 16927660 ~ 16927776 (+)
G775953 LOC106674859 non-coding upstream 83384 16693396 ~ 16694150 (+)
G775942 NA non-coding upstream 96416 16680553 ~ 16681118 (+)
G775938 NA non-coding upstream 106508 16670603 ~ 16671026 (+)
G775937 NA non-coding upstream 107912 16669269 ~ 16669622 (+)
G775935 NA non-coding upstream 113841 16662811 ~ 16663693 (+)
G776015 NA non-coding downstream 1289 16822631 ~ 16822832 (+)
G776016 NA non-coding downstream 1523 16822865 ~ 16823073 (+)
G776017 NA non-coding downstream 2796 16824138 ~ 16824345 (+)
G776020 NA non-coding downstream 22282 16843624 ~ 16843838 (+)
G776021 NA non-coding downstream 23387 16844729 ~ 16845006 (+)
G775945 NA other upstream 94043 16683194 ~ 16683491 (+)
LOC110532939 NA other upstream 434724 16315734 ~ 16342810 (+)
LOC110532936 LOC106577844 other upstream 526670 16233342 ~ 16250864 (+)
G775306 NA other upstream 590084 16186276 ~ 16187450 (+)
G775142 NA other upstream 910826 15866089 ~ 15866708 (+)
LOC110532942 LOC106577806 other downstream 475713 17292470 ~ 17305629 (+)
G776487 NA other downstream 559283 17380625 ~ 17394121 (+)
G776818 LOC106600668 other downstream 836855 17658197 ~ 17659145 (+)
G777111 NA other downstream 1180547 18001889 ~ 18002182 (+)
G777113 NA other downstream 1181925 18003267 ~ 18005668 (+)

Expression

LOC110531623(LOC106577803) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 150.
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LOC110531623(LOC106577803) Expression in each Bioproject

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LOC110531623(LOC106577803) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 6000.
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Co-expression Network