LOC110531626 (LOC106608856)


Basic Information

Item Value
gene id LOC110531626
gene name LOC106608856
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 16827053 ~ 16828583 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614927.2
TATTGTGAGCAACGTGAATAGTGGGACCTATCTTTGAGAAACACAGAACATTTTCGCAACCGAAAATTGGTGTAGAAATTTGCTTATGTTGTGAACTGGAAACCAAATTTAGCAGCTATTACACAGATACCATATCAGTTATAATATCATTAATGTGTTTAGAAAACAAAATAAGTCAAAATGTTGATTAAAGTCAAGACCCTCACAGGGAAGGAAATTGAGATTGACATAGAGCCCACAGACAAGGTGGAGCGGATTAAGGAgcgagtggaggagaaagaggggatccCTCCTCAACAGCAGAGGTTGATCTACAGCGGGAAACAGATGAACGATGAAAAGACAGCGGCAGACTACAAGATCCAGGGAGGTTCTGTACTACATCTGGTCCTGGcactgagaggaggggaggtccTCCACTGTCCCACGAGCCTTCTGCTCGCCTTGTAACCACCACGCTTGCCTTAGCCCCGGTTAGACGTTgcccttaggcacagatctaggatcagcttaacCCTCCTCAAATCCAAACCGTAATCGTTATGGGCGACAAATGCAAAACGGACCTTGGATCAGTGATTGTGGGCAACTTCAGCTTTATCCCCTTGGAACCGGCCAATGTAGACCTTCTCTGAGACATATTACAACTGTAACGAGTTGTTGTCCTTTTGTGTTGGGAGGATCGCCATGTCAGCACTCTCTCTTGTCCCTTCCTCGTTTGAGAGCATCAAACTGATGCAGATGTTACGTTTACAATGCGTGAAAGTGTGAGAAAGTATTATTCTGTAGAGATAGATTCATGTAATGGTTTAGTTTGTCATTAAAACATCAGTTATCCGCGA
>TU884559
CGAAAATTGGTGTAGAAATTTGCTTATGTTGTGAACTGGAAACCAAATTTAGCAGCTATTACACAGATACCATATCAGTTATAATATCATTAATGTGTTTAGAAAACAAAATAAGTCAAAATGTTGATTAAAGTCAAGACCCTCACAGGGAAGGAAATTGAGATTGACATAGAGCCCACAGACAAGGTGGAGCGGATTAAGGAgcgagtggaggagaaagaggggatccCTCCTCAACAGCAGAGGTTGATCTACAGCGGGAAACAGATGAACGATGAAAAGACAGCGGCAGACTACAAGATCCAGGGAGGTTCTGTACTACATCTGGTCCTGGcactgagaggaggggaggtccTCCACTGTCCCACGAGCCTTCTGCTCGCCTTGTAACCACCACGCTTGCCTTAGCCCCGGTTAGACGTTgcccttaggcacagatctaggatcagcttaacCCTCCTCAAATCCAAACCGTAATCGTTATGGGCGACAAATGCAAAACGGACCTTGGATCAGTGATTGTGGGCAACTTCAGCTTTATCCCCTTGGAACCGGCCAATGTAGACCTTCTCTGAGACATATTACAACTGTAACGAGTTGTTGTCCTTTTGTGTTGGGAGGATCGCCATGTCAGCACTCTCTCTTGTCCCTTCCTCGTTTGAGAGCATCAAACTGATGCAGATGTTACGTTTACAATGCGTGAAAGTGTGAGAAAGTATTATTCTGTAGAGATAGATTCATGTAATGGTTTAGTTTGTCATTAAAACATCAGTTATCCGCGATGGATGTTGCATTGTCATTAATGATGTGTTTAATGTTATGGGATTCAAACACCACACCAGTCAACAACATTTATTTTACC
>TU884558
GGGACCTATCTTTGAGAAACACAGAACATTTTCGCAACCGAAAATTGGTGTAGAAATTTGCTTATGTTGTGAACTGGAAACCAAATTTAGCAGCTATTACACAGATACCATATCAGTTATAATATCATTAATGTGTTTAGAAAACAAAATAAGTCAAAATGTTGATTAAAGTCAAGACCCTCACAGGGAAGGAAATTGAGATTGACATAGAGCCCACAGACAAGGTGGAGCGGATTAAGGAgcgagtggaggagaaagaggggatccCTCCTCAACAGCAGAGGTTGATCTACAGCGGGAAACAGATGAACGATGAAAAGACAGCGGCAGACTACAAGATCCAGGGAGGTTCTGTACTACATCTGGTCCTGGcactgagaggaggggaggtccTCCACTGTCCCACGAGCCTTCTGCTCGCCTTGTAACCACCACGCTTGCCTTAGCCCCGGTTAGACGTTgcccttaggcacagatctaggatcagcttaacCCTCCTCAAATCCAAACCGTAATCGTTATGGGCGACAAATGCAAAACGGACCTTGGATCAGTGATTGTGGGCAACTTCAGCTTTATCCCCTTGGAACCGGCCAATGTAGACCTTCTCTGAGACATATTACAACTGTAACGAGTTGTTGTCCTTTTGTGTTGGGAGGATCGCCATGTCAGCACTCTCTCTTGTCCCTTCCTCGTTTGAGAGCATCAAACTGATGCAGATGTTACGTTTACAATGCGTGAAAGTGTGAGAAAGTATTATTCTGTAGAGATAGATTCAT
>TU884560
CGAAAATTGGTGTAGAAATTTGCTTATGTTGTGAACTGGAAACCAAATTTAGCAGCTATTACACAGATACCATATCAGTTATAATATCATTAATGTGTTTAGAAAACAAAATAAGTCAAAATGTTGATTAAAGTCAAGACCCTCACAGGGAAGGAAATTGAGATTGACATAGAGCCCACAGACAAGGTGGAGCGGATTAAGGAgcgagtggaggagaaagaggggatccCTCCTCAACAGCAGAGGTTGATCTACAGCGGGAAACAGATGAACGATGAAAAGACAGCGGCAGACTACAAGATCCAGGGAGGTTCTGTACTACATCTGGTCCTGGcactgagaggaggggaggtccTCCACTGTCCCACGAGCCTTCTGCTCGCCTTGTAACCACCACGCTTGCCTTAGCCCCGGTTAGACGTTgcccttaggcacagatctaggatcagcttaacCCTCCTCAAATCCAAACCGTAATCGTTATGGGCGACAAATGCAAAACGGACCTTGGATCAGTGATTGTGGGCAACTTCAGCTTTATCCCCTTGGAACCGGCCAATGTAGACCTTCTCTGAGACATATTACAACTGTAACGAGTTGTTGTCCTTTTGTGTTGGGAGGATCGCCATGTCAGCACTCTCTCTTGTCCCTTCCTCGTTTGAGAGCATCAAACTGATGCAGATGTTACGTTTACAATGCGTGAAAGTGTGAGAAAGTATTATTCTGTAGAGATAGATTCAT

Function

NR:

description
PREDICTED: NEDD8

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614927.2 False 842 mRNA 0.44 4 16827133 16828583
TU884559 False 862 TUCP 0.44 4 16827053 16828523
TU884558 False 779 TUCP 0.45 4 16827174 16828561
TU884560 True 741 TUCP 0.45 4 16827174 16828523
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110532940 LOC106608858 coding downstream 75839 16595063 ~ 16751294 (-)
LOC118966166 NA coding downstream 245328 16580259 ~ 16581805 (-)
LOC118966165 NA coding downstream 253241 16555795 ~ 16573892 (-)
LOC110531619 LOC100380775 coding downstream 386985 16427088 ~ 16440148 (-)
LOC110531616 tesk1 coding downstream 537265 16263464 ~ 16289868 (-)
LOC110531628 cideb coding upstream 57945 16886528 ~ 16891710 (-)
LOC110531631 dhrs4 coding upstream 80255 16908838 ~ 16913948 (-)
LOC110531634 LOC106577795 coding upstream 125190 16953773 ~ 16966223 (-)
LOC110531636 LOC106577791 coding upstream 154127 16982710 ~ 17003093 (-)
LOC110531638 LOC106577815 coding upstream 200019 17028602 ~ 17043723 (-)
G776278 NA non-coding downstream 4504 16822282 ~ 16822629 (-)
G776277 NA non-coding downstream 5259 16821515 ~ 16821874 (-)
G776214 NA non-coding downstream 123229 16703566 ~ 16703904 (-)
G776202 NA non-coding downstream 142850 16684074 ~ 16684283 (-)
G776201 NA non-coding downstream 143327 16683348 ~ 16683806 (-)
G776282 NA non-coding upstream 13690 16842273 ~ 16842505 (-)
G776284 NA non-coding upstream 18825 16847408 ~ 16847682 (-)
G776285 LOC107661334 non-coding upstream 20325 16848908 ~ 16849146 (-)
G776286 NA non-coding upstream 21719 16850302 ~ 16850610 (-)
G776246 NA non-coding upstream 23725 16852308 ~ 16852628 (-)
G775532 NA other downstream 913839 15912836 ~ 15913294 (-)
G775139 NA other downstream 963299 15862320 ~ 15863834 (-)
LOC110531603 groa other downstream 1039527 15781909 ~ 15787666 (-)
G774954 NA other downstream 1201213 15625202 ~ 15625920 (-)
G774702 LOC106577875 other downstream 1465814 15352307 ~ 15361319 (-)
G776294 NA other upstream 36884 16865467 ~ 16866034 (-)
G776340 LOC106577790 other upstream 181429 17010012 ~ 17014685 (-)
G776355 NA other upstream 196797 17025380 ~ 17025813 (-)
G776461 NA other upstream 416851 17245434 ~ 17245797 (-)
G776652 NA other upstream 491032 17319615 ~ 17320373 (-)

Expression

LOC110531626(LOC106608856) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 80.
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LOC110531626(LOC106608856) Expression in each Bioproject

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LOC110531626(LOC106608856) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2000.
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Co-expression Network