XLOC_026619


Basic Information

Item Value
gene id XLOC_026619
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 36969403 ~ 36972222 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053073
ACCGCGGAAACCGATTGGCTCATGGCGCACACGCCCAGAATAATCCCCGCCCACTGTGTCTGGATCGCTGCACATGAGAAGTAGGCATTTCAGGAAATGGAAACAAATCTGCGATGTGGATCAGAAGTAATTGTCTCAAATCGTAAAGCAAAACAAACGCCAAAATCCCCAGTTTGAACCTATAAACAAGACACAGCCTATCAGAGCTGCTTAATTTGTAATTACAACACATTTCAGTTGTTTAGGTTTGATCCCAATCTGTCCAAACTGTGGTgtcatcaccaaaaaaaaaaaatgggcctTCTGTTTTGTAATGGGAAATTTGGCTTCTGTTATTTGGATAGTGCTGTGACGTGGACACTGTGCAGTTGCATTAACAAGAAACTCCTGTCACGAGAGGCTCTGAAGAGAGGGAGACAGACAGATCAAGAGGGAAAGAGCACCAGAAagactttttgtgtgtgtgtgtgacatccAAAAGGCTTGGAAAGCAAATGGCTCCGCATGGACAGCAATCAAACATCATttgattttgtttagttttattgtacCAATATCTTCCAGGAAATAGCTGGTCAGATGAGTTGACGTTAATCAAATGAATCATTCTGCAGACTCTAGTAGCTGAAGGATTATCATTAAACCATGAGTGGTATGTTGGTTCATAAAAAGGTTTTCTGTTTAAGATGGTCTCAGGCAACTCATCTATGAAATAGACTGGCTTAAAAAGTAGGCAAAACCTCTCCTAAACCAGGCCTCTAGACAGACTAGCAAACTAGTCTTCTCAGTATCAGCCTTATTTGAGCTTGGTCCATTTGATGTACAACTTTATTATAGTACTTATGGTGATGTAATCCAAGACCTTTGGAGAAATGATGctaaggtatccataatcctggaccaggccatatcctgagcagatgctgtggcagtCACGTAGgagcggagagcatgagactTATTCCTGAAAGACTCAGCGACAGACAAGTTTTCGCATTGAttctgtgggccagcctgaacacccgccggtgacctgctcacacctgcagcttctccacgatggacgtccagcgttctctaGCCTTTGGAACCCAGAATGCAGCTctacacaagaagtttggccagaggagaaatggtcgtgcccaattgagcttggttctctcaaggtttttttcctttactttcgtcaattggtgaagttttgtttctcgccactgtcACTACTGGCTTGCCTTGTTTGGGATCTTTTGGAGCTGCacatcggtggatttgctcttcagtgtttggtgaAAATAAAACCACACTGACCTGAACTAAACTCAACTTcgactctgaaaactggactgacacagttttaatttactagaacttctatgttaagctgcgtTGACACAAGCTACATTGAcataattaaacataaattgaatttaattgaatattagCAACAGGAATCAAGTGTGAAGGCTATTGTTAAAAGTttacaagcacacacaaacatcagagcaaaaattataaaaaatacaattcaacATGGTCAAACTTTAATCGTCTGCAGGTACTAAAGATTCAAACACTCAAAACTGCTTCCATGCACAAAGCCCATATAGATAAACTAGCATATTTCTTTTTTGCTTTCTTAGTCCTCCATGACCAAATGAAGCTTGCAACTGTGGAATTTTGCAGTTGTTGAAAGGTTTAAGGAGCTGTCAAATTAGTACCCATCAAACCTGCTGAAAAAAATTACCTAGAAGCTCTAATTGTTTCCAATAccattataaaaataacaaaccaTTCTACTGTGTTTTAGGACATATTCTATTATTAAGTAGTTTATCATACCAGCATTAGAAGGCAACAAATTACCAATCGAGACCAGCAAGGACCATAACAGTTTCTTTAAAACCAATGCAATTCCCATTATAACTATTAAAACCATTACTAAACTTATAAGGATTTATACTGTTTTATGCAGCAGGAAACCACTGGTCAAACAGAGCATCCCACCCTAAACCAACAACAATTGGTTTAAGCAGGGGCGTAGCAACTGGGGGGAACGGGGGTATATGTTCCTTTCATTTTTTAGAGACAGACcaggtgattaataattatatgcaTGTAAACTTAATGATCTCATACAGCTGTCCCcccacacttttaaaatgtctgctaGGCCCCTGGGTTTAACTATTGTTACTGGCTGTGATGATCAAAAACTTTTTTGCAGAAATCAACCTGCACtaacagttataaaaaaaatttaaagcaatGCTAGAACAGCAATGTGGCATTTGTTTGATCAAAAAAGGTAAAACTATGGTATTATTCATATGATCTTTTAGAAAGCTATGATTTCCttttcaagaaacatttattagcATTAGTATTTGCGCTGCACAATAGTTCTGTGCAGTCTtatgaaacattttattaattaatttatttattttacaaaatatcttgaCTTTTGATCTATTTAATATGCTGTATGTATCATACTATGATGAACAATGATGttggtttttattaaaaaataaaactagaaaCTTTTTTTCTAGTATTATCTCTTCGGTcagcaaattataaataaatgaattcaagaATG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053073 True 2602 lncRNA 0.38 3 36969403 36972222

Neighbor

gene id symbol gene type direction distance location
XLOC_026618 CT573704.1 coding downstream 1410 36967871 ~ 36967993 (-)
XLOC_026617 NA coding downstream 15315 36953625 ~ 36954088 (-)
XLOC_026616 cntnap1 coding downstream 24654 36904039 ~ 36944749 (-)
XLOC_026615 ramp2 coding downstream 122907 36836711 ~ 36846496 (-)
XLOC_026614 abcc6b.2 coding downstream 145213 36807642 ~ 36824190 (-)
XLOC_026620 tubg1 coding upstream 87581 37059803 ~ 37082618 (-)
XLOC_026621 CT573704.2 coding upstream 103476 37075698 ~ 37075813 (-)
XLOC_026622 mlx coding upstream 163294 37135516 ~ 37148594 (-)
XLOC_026623 SRCIN1 coding upstream 263702 37235924 ~ 37476475 (-)
XLOC_026624 arf2a coding upstream 586269 37558491 ~ 37588855 (-)
XLOC_026612 FO744883.1 non-coding downstream 213254 36756033 ~ 36756149 (-)
XLOC_026606 NA non-coding downstream 382267 36583100 ~ 36587136 (-)
XLOC_026600 NA non-coding downstream 645778 36320239 ~ 36323625 (-)
XLOC_026625 NA non-coding upstream 609300 37581522 ~ 37584807 (-)
XLOC_026626 NA non-coding upstream 661878 37634100 ~ 37649389 (-)
XLOC_026631 BX936420.1 non-coding upstream 1553757 38525979 ~ 38529416 (-)
XLOC_026636 NA non-coding upstream 1999213 38971435 ~ 38975698 (-)

Expression


Co-expression Network