LOC110531636 (LOC106577791)


Basic Information

Item Value
gene id LOC110531636
gene name LOC106577791
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 16982710 ~ 17003093 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614947.2
atatctctctttctctccgctgAGCGCGTTGACCAACCTCGTCCACGCGTCAGAGAGCGACGTCTTAATAGTCACACAGCGAGAAAGAAAGTAACTTGTGGAGACAAAGGAGAGAGGAACTGTGAAGCACTGAGATCGCAACGATTTCCCCCCACCCAACATCTGGATTTAAGTTTTTGGATAGACTTGTAGGAtgcttttgtttttttacatttagttATGATTGTTGGTACCACAAAATATTTGTTGTGCAGAATTTGAAGTGTGGCAAGAAAGTATCCATGAGAACAGATTAGAGTACAATATTGTTTTAAAGGTAATCGCTAGGGATTATAATTGATAAAAACGTGGAAAGCCAATAGAAGCTGTCCGGTTGTGAAGCTCTTTATTGAGTATTTTTGGGGTAACTCGCACATACAGAGGAATGTTGCCCCGGCTCGAAAATGTGATCCAGCTCCTGACGCTGGCGTGCGGACTGTTCTTTGGAGTTGTTTCAACGGAAAACGAAGTAAAAGCAGAGgTGTGGCTGCAACAGTATGGCTACCTGCCCCCGGGTGATGTCCGAGCCCAGGCTATCCGTTCTCCCAAGTCCATCACCACAGCCATCACAGCCATGCAGAGGTTCTACGGCCTCGCCGTCACCGGCTCCATCGACATCAACACCCTACAAGCGATGAAGCGGCCGCGTTGTGGTGTCCCGGACAAGTTTGGCTCTGAGCTGAAGAGCAACCTGAGGAGGAAGAGATACGCCGTACAGGGGCTGAAGTGGGACAAACAAGAGGTCACATTCAGcATACAGAACTACACCCCTAAGATTGGGGAGTACGCTACATACGAGGCCATCCGCCGGGCTTTTAAGGTGTGGGAGGCCGCCATCCCGCTCCGCTTCCGAGAGATCCCTTACAGCCACATCCGGGACAAGGTCGACAAGTACGCTGACATCATGCTCTCCTTCTCCGAGGGTTTCCACGGCGACAGCACGCCGTTCGACGGCGAGGGCGGCTTCCTGGCTCACGCGTACTTCCCCGGGAACGGGATAGGGGGCGACACGCACTTCGACAACGCCGAACCCTGGACGACTGGCTACGTCGACCAAGGAGgtaaTGATGTGTTCCTGGTTGCGGTCCATGAGTTGGGTCACGCCCTGGGTCTAGAACACTCCAACGACCCGTCTGCCATCATGGCTCCATTCTACCAGTGGATGGACACAGAGAACTTCCAGCTGCCTGATGACGATCGCCATGGCATCCAGGCAATCTATGGGTCGTCCGGAGCGCCACCCCCTCCCCCCCGCCCCACCAGACCCTCCAAGCCAGACCAGCCTGGACTCGGACCAGACGTCTGCGAGGGACACTTCGACTCCATCGCCATCCTCAGGGGGGAGATGTTTGTCTTTAAGGATAAATGGCTGTGGCGTGTGCGGAACAACAAGGTTCTCCAGGGTTACCCCATGCCCATCGGTCACTTCTGGAAGGGACTGCCACCAAACATCAACGCCGCCTACGAGAGGAACGATGGCAAATTTGTGTTCTTCAAGGGTGACAAGTACTGGGTGTTCACAGAGTCCAGTATGGAGCAGGGTTACCCTAAGACTCTGAAGGAGCTGGGCACAGGGCTGCCCAAAGACAAGCTGGACGCTGCCCTCTTCTACACCCCCACCGGACAGACATACTACTTCAGAGGGACCAAgtaTTACCGTTTCAATGAGCAGTCCCAGACTGTGGACAGAGACTACCCCAAACCCATCAACACATGGCAGGGTGTCCCCGACAACATCAAGGCTGCCATCATGAGCGAAGAAGGatCCTACACCTACTTCTATAAAGCCAACAAGTACTGGAAGTTCAACAACCAACACATGAGGGTGGAGTCGGGCTACCCCAAGTCGGTGCTCAGCGAATGGATGGGCTGTGCAGGGGAGGAGCCAAAGAAGCGGGACGGCAAGGAGGAAGTCATCATCAtcgaggtggaggagggagaaggcGGGGCCACGGCGGCGGCCGTGGTGATCCCCCTCCTCCTATTGGTCTGCGTGGTCCTCACTCTGGGAGCCCTGCTGTTCTTCAGGAAGTACGGGACGCCACGACGTCTCCTCTACTGCCAGAGATCTCTACTGACTAAGGTTTAGAGACGCACTGAATGAACCAATGACgcagagggactgagagagataAAGTGTCTGAACGAATtgaaagaaagaggggagagggagggacagggtgaggaaacagaggaggaaaggggggTGAAAGAAGTTGGATTGTGTGGTAAGCGAGAAGAGGTAATGTCATGAGGGGTTGGTTGGTTGGACGTTGGGGTTTGGTCCATTAGTTGGGTTGTATATACCACAgacagaggatgagagagagagagaatctgaaTTAGGAAAGATGTGTATTTGTATGTTACCTATTTACATGTACAGCTCTGCGGGTTTGAGATCTGGACCAGGCCCCAACACACAAAGAGATGATGATGATTGTGACCAACATCCTGTGTAGTTGACACCCCATCTGCAATACATCTACTATCatgtccctccctccattctatcCCTTCTCCCCTTTGTTTTCCTCCTCTCCTAAATCCTCCCCCCCATCTGCTTGACGACTCCAGCTGAACCGCTGTCTGAATTAAATGTTTCACCCTGCAGTATATAATATACTTTCTTGTTTCATTTTTGATTTCGCTCTCAAATCAGGCATGATCACAAAcaatcatctctctcctccttgttTCCCCCCTGTGCTCCAGCTACAGTGGCACATAGCCACCACAGGATATtgttggcaccttaattggggaggactggcttgtggtaatggctggagcggaataggcggaatggtatcaaacacatggtttataTGCGcatgatgccattccattcactccgttctAGAcaatattatgagccgtcctcccctccacTGATAACCACATCAGGTCTTGTAGCTGTTGCAAAGGGCATGTAATAGGGTGCTCTCCCTACCCAGGGCTGAAATGAGACAGGCTCAGAAATGAAGGCCATGTCAGGAAGAGAGGGTCCAAGATGGCTGCCGTTTATACACATTGACAATGACATTTGACCTCTGTAGTAGTccacaaaaaaaaatgcttttcctCCCAGTTGCTGTACATGTTTCTCTGTACACCTCTGTTTAAACCATATCTCAAATTGCTCAAGCACTCAGTACAGAGCCTGGTCTCAGTAAGCAGTCAAAGTTGGATGGAATTAAAGTAGCCATTTTTACTCAATAAAGCCAGTTTCAATGTTACTACAAAGGAAAGTGGTGTAGTTAGATCACATAGTACCCACTCCAAATGCTGATGTCTTATCGGGGTCTTTTTTTGTTTTGGTACCATCATTGTAAgaaatgttgttgttattattatgactatagttattattattgttgttctCCGGGCGTAGTCCTTTGGtaaattgtgtttgttgtttttaTACATTGTCATTTTGAGTCCTGCTGGACAGAGGCTATAACGTGACAAGGGTTGAATCTAAATGGATCCCATTTTTCCATTGAAGTGGTGGACTTGGACAGTACAGAGGGGGTATTTTAAGATTTTGGAAAAtgtttccatttttttttcaaaacacttaTTTTCCCATTGATTGGTTGGCATGTAAAGACAATCAAACAAAACTATTTATAAGTCATTCTGATGGTgcttcatgtttgtttttttttgtattacacaaatcaaataacaataacaacaatgatAATGGTAATGATATTTATAATGATAATGATATTTATAATGATAATGATATCAATAAAAAGGGAATACATTTTGTTTTGGCCAATTTTTCAACTTTTTGAATTTCATGCATTAAAttgaaataaaacaa

Function

NR:

description
matrix metalloproteinase-14-like

GO: NA

KEGG:

id description
K07763 MMP14; matrix metalloproteinase-14 (membrane-inserted)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614947.2 True 3874 mRNA 0.48 10 16982710 17003093

Neighbor

gene id symbol gene type direction distance location
LOC110531634 LOC106577795 coding downstream 16487 16953773 ~ 16966223 (-)
LOC110531631 dhrs4 coding downstream 68762 16908838 ~ 16913948 (-)
LOC110531628 cideb coding downstream 91000 16886528 ~ 16891710 (-)
LOC110531626 LOC106608856 coding downstream 154127 16827053 ~ 16828583 (-)
LOC110532940 LOC106608858 coding downstream 231416 16595063 ~ 16751294 (-)
LOC110531638 LOC106577815 coding upstream 25509 17028602 ~ 17043723 (-)
LOC110532941 LOC106577784 coding upstream 47656 17050749 ~ 17064251 (-)
LOC110531640 LOC106577784 coding upstream 73837 17076930 ~ 17080885 (-)
LOC110531642 ylat1 coding upstream 303197 17306290 ~ 17317711 (-)
LOC110531643 LOC106577781 coding upstream 318338 17321431 ~ 17327614 (-)
G776329 NA non-coding downstream 11179 16971034 ~ 16971531 (-)
G776247 NA non-coding downstream 29131 16952406 ~ 16953579 (-)
G776310 NA non-coding downstream 56772 16923551 ~ 16925938 (-)
G776307 NA non-coding downstream 78022 16904421 ~ 16904688 (-)
G776295 NA non-coding downstream 116030 16866424 ~ 16866680 (-)
G776346 NA non-coding upstream 703 17003796 ~ 17004079 (-)
G776347 NA non-coding upstream 1249 17004342 ~ 17004571 (-)
G776350 NA non-coding upstream 12857 17015950 ~ 17016162 (-)
G776352 NA non-coding upstream 14916 17018009 ~ 17018236 (-)
G776353 NA non-coding upstream 19551 17022644 ~ 17022982 (-)
G776294 NA other downstream 116676 16865467 ~ 16866034 (-)
G775532 NA other downstream 1069416 15912836 ~ 15913294 (-)
G775139 NA other downstream 1118876 15862320 ~ 15863834 (-)
LOC110531603 groa other downstream 1195104 15781909 ~ 15787666 (-)
G776340 LOC106577790 other upstream 6919 17010012 ~ 17014685 (-)
G776355 NA other upstream 22287 17025380 ~ 17025813 (-)
G776461 NA other upstream 242341 17245434 ~ 17245797 (-)
G776652 NA other upstream 316522 17319615 ~ 17320373 (-)
G776642 NA other upstream 342385 17345478 ~ 17354347 (-)

Expression


Co-expression Network