LOC110531637 (LOC106577790)


Basic Information

Item Value
gene id LOC110531637
gene name LOC106577790
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 17006102 ~ 17014685 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614948.2
TAGCGCTACATCCTCTCATGTCACTCAACTAAAACAATACGGAAGTTGCACAGAACTCTGCCTGTCAACAAGAAAGACGACAGAAAGGATTGTCTTCCTGAAAGACAAGTCAGCGACGATGGGGTCATTCTGCAAGGAGGACTGAGGGATCTGACCTAGATGTTTTTCTATTCTACTTTTCTTTCTTTTCaacttttctttctctttcatgaGCACCTGTATTTCAGAGGAGCACTATCATCAGAATGACTGCCTCTTTCAACCTTTGTGTCCTTAACGTTTTGTTTGTAACTGCCTACAGCAGCCTGGAGCTGGCCTCCAGTACTGCTCATTGTGGACAATCTCCCCAAGTCCTGGAAGCCCCGAGGGGAGAGATCAGAAGCTCCGTCCACCACAGCTGGTCCTACCGCCCACGGCCGTTCAACTGTAGTTGGATTATCAAGGCACACGTAGGAGAGCCCGTTATCCTCAGTTTCTCCCAGTTTTCTACACGCTGTAAGAAGGAATGGGTCTCGGTGACATCATCAACTGGCAAGCCCATTACCTTTTGTGGTTCCGACCTGCCAAAGCCCATGGAGTTGATGGGGGGGAACATTACAGTGACGCACCACTTCCTGCCACACTTATTCCCCGTCTCTGCGTTCTGCCTGGGCTACGTCAGAGactctgGTGAATGTCCGGTGGTGGACTTTGAGTGTTTGGGCGGGCGCTGCCTGCCCCTGTCCTGGCGCTGTAACGGCCAGACAGAGTGTCTGGGTGAAGGGATGGGGCTGGGAACAGACGAGCAGGAATGTGACGGAGAGATCGAGATCCTGGATCCTGAGCAAGACAAAGTAGTggtaaccaccaccacaccagagtcctacatagagagagagagggagagggagggggagacaggaagagagaagagCGGGGGGAGGGATTGGGAAACGGCACCGGTTGAGGTGGAGAAGGaagtagaggaggatggggaCTATACCAAGGTAAAGGAGCCAGATAATCCTATGGAGGACTACTGGGAGTTCCTGCCTCGTCAACTCCCCAGCCCCCAGCCTCACAGAGCCCACCCCGGTCCCGGTGTGACCCAGGCCCCCACCGAGTGGCCGTGTGGCGGCCTCCTCCAAACCTTCTATGGGACGTTCGCCCCTCCTTCCATCAAGGGCCCCCCTCTGTTCTGTGTGTGGACCCTGGACCCCCAGGACTCCAGGCCTCTAAAGCTGGACCTGCAGCTGCTGGAACTGGGGCCTGGAGACACGGTCACTATCACCAACAGACAGCAGGGCACCGGGGAACTCATCAAAACTATCACCAGCGAGTCCAGCTACAAGGCCATCCAGGTTGAGTCCCGGACCGGCCTTCTCTCCCTGACCTATCACACGCTTCCCGGCTCGGAGGGGCTGGGCTTCAACGCCACCTACCGTGTCGGGGGCTACTGCCCCCCCTGGGAGGGTAAATGTGGGGGTGCCGCGGGGGGCTGCTACACCCAGGAACAGAAGTGTGACGGGCGCTGGGACTGTCCTGAGACGGGGCATGATGAGGCGGGATGCAGGGGGTGTCCCAGGGACCAGTTTGCTTGCGGAGGGGTGGGGCAGCGGGCGGTGCTGGCGGGTCATAACTTCATCGGGCGTCCGGTGTGCTTCCCTGCCAAGGAGAGGTGTAACTACCAGCTGTACTGTGCTGACGGGAGCGACGAAAAAGACTGTACCATATGTCAACCTGGGACCTTCCACTGCGACAGCAAcagGTGTGTGTTTGAGAGCTGGAGTTGtgacggccaggtggactgtaAGGACGGGACAGACGAGATGAACTGCACCATGACCCTGCCTCGAAAGGTCATCACCGCGGCAACCGTGGGCAGCCTGGTCTGTGGGCTGCTGCTGGTCATCGCTATGGGCTGCACCTGCAAGCTCTACTCACTGCGGACCCGAGAATACAGTATGTTTGCCCCAATCAGCCGCCAGGAGGCGGAGCTAATCCAGCAGCAGGCCCCTCCCTCCTATGGTCAATTGATCGCCCAGGGCATCATCCCTCCAGTGGAGGACTTCCCCACGGAGAACCCCAATGAGtcttcctctctttctctgagaGGTTTTCTCCAGCTTCTCAGACAGGATACTTCTAACTCTCCACGACGCCGACGCCGTCCCCGATTCATCCGCCGGGCTGTCCGTCGCATGCGGAGATGGGGCCTAATCCCCAGATCCGCCTCCAGGCCCTCCCAGCCATCCAGCTCTGCCCCCCAGCTGACAGAGGCCCCCTCCACTGGTGTGGATCCCAGTCAATCAACTCCCGCCACCACCTCATTGGCTGTGGAAGCCGTCAATCTGCCATTGCCACAGAAACTAGGCTTGCTCCCACAAACAGTGCAGTACCAGCCACCACCACCCCCCCACTTCCTTCCTCCACCCACTCTACTCCCTCCACCCATTGTCTCTACTCCAGCTACCCCCCAGAGCCCTCCAGTGGctgtcccccccacccccagcagCCCCTCCCTagcctctctcttccactctttgGGGCGCACTATCTCTCGCTTccgctcctccccttcctcctcctcccccaccaacTCACTGCCCCTCTCcacatccccctctttctcttcctcctctttggAGGACGAGGTGCTACTTATCCCCCTCTCCGAGGACACAACCCCAGAGGACGACGTGCCCCTGCTTACACTCGACCCCTGACTTGATCCAACACCCCTTCCCTAAATGATGACTCAAGCACAGGAGCACTGCaaggctccctctctctctctctctctctctctgtgttggtctGGTGCCTTGGAATTGCATTTGTACTAACTAAAGGAATCTAATATTCAATGCTTTTATGTTATTGAGTGTGGAAACTCCTAGAGaaagtgtgtgtatttgtgtgtgtgtgtgtgtagggtattTGTGTGTTGGATGTGCACTTATCCAGATATAGTCTGAAAGAGGTGAAATTTGCACAGAAAATCTCTCCCTCATGATCTAATTTAAGCAATGAGGCACCTCTggagtttgtggtatatggctaatataccacggttaagggctgttcttatgcaggACGCAACACGAAGTGCCTGGAtccagcccttagccgtggtatattggccatataccacaaaccccagaggttcattattgctattataaactggttaccaacgtaattacagcagtagaaataaatgttttgtcatacacgtggtatacagtctgatataccatggctttcagccaatcagcaatcAGGGCTCAAAACCACccggtttataatatataatttACTGTCAAGTGAATGATTGGTTTTAGCACGTGAAAGagttcatgtctttgtgtgacaGCATATGTGTGAATGCGTCATGTAAGGGTGAGCATATGGGGGCCAGTGTAAGGATATGTAGATGTCCTGTGTAGACACTATCCCATGTATAGTTCTCATCTCCCATCTAAGTGCCTTTTCAGAAGCTTGCTACAGTTGATGAATTTGAATGatgacacacatactgtacacactgtccCAAATATGTGGACAAAAAGGAACACCCACCTTCTCACACACAGACTGTGTTTTATATTGCTTTCATAATGGATAAATTGCATGTCAATTCTGCAAGCTGGCAATAATTTTTGGGGACCCTCCTGGTTAGTGTACGTATGGCATAACTGACGTGTATAGTTTCGTATGCACTTGCAAGTGTGATGTATGAATGTTTTATAATGTAGTTCTCTAGTAGACAAATTGTGTCTCGGCTCACAAGACAATCTCTCTTGGTGCCTGAGGTTGGGTTAGACCTGTGAAGTGCACAACCGCACACAGAAAGATGAGGCCCCCCAGGGCCCACGGTCACAACAACCCCGACTTAAATTCTCAGCCCTTTGTGAATGGAATCCACTCTACCACGCTTTCACACAGTGAACATATAGCAAATTAAGAGACTTTTTAGTCTGCCATTTTTAACATCGTATCTTTTATTAGTTTTTCCGCTTTTATCCTTCAGaaatgtactttaaaaaaaatcttaaattGTTGTTCTGTTTGCCTGGGTTGTACTGAATGTATTCAATTAAACATAGTGGTTGGAGGATGATATGTTTAAAACTTGCAATGTAGTGAtaaggttggagagagagattttACTAGGGTCTATTTCACTGTACATAGCAAAGATGTGGACAAATCCACAGAGATTAAACAATTTGCACTTTTA
>XM_021614949.2
AATTTAGTTGTTACAGGCATTTATATACATCATGTATCGCTGTTTGTAATGTATATGTTCACCAGGGTGTTTGTAGGTATATTTGAATGCTTTTTATCGCGTGGCACGTTCAGGAAACGTTACAAGGAAGAAGTTAGTTAGTTAAGTTAGCATTAGCATGCTAGCCGCATAACACAGACAGGACGAGAGAGCGAAGCAGCTGCTTCTTTACCCTTCCTTCCTCTTCAAGGAAGTTTGCGGGGCGAGGATCCAGGAGGCCTAGATAAGTCTAGTGTGAATTGTTTCAGCTCACCTGGAGTTAAAATGGCATAGAAAAGCATTTTTGTGGTTAGGAGAATGCTTTTTGTGGTTAGGATAATGCTTTTTGTGGTTAGGATAATGCTTTTTGTGGTTAGGATAAGGATTGGCTTGCTGATTGTCTTCCTGAAAGACAAGTCAGCGACGATGGGGTCATTCTGCAAGGAGGACTGAGGGATCTGACCTAGATGTTTTTCTATTCTACTTTTCTTTCTTTTCaacttttctttctctttcatgaGCACCTGTATTTCAGAGGAGCACTATCATCAGAATGACTGCCTCTTTCAACCTTTGTGTCCTTAACGTTTTGTTTGTAACTGCCTACAGCAGCCTGGAGCTGGCCTCCAGTACTGCTCATTGTGGACAATCTCCCCAAGTCCTGGAAGCCCCGAGGGGAGAGATCAGAAGCTCCGTCCACCACAGCTGGTCCTACCGCCCACGGCCGTTCAACTGTAGTTGGATTATCAAGGCACACGTAGGAGAGCCCGTTATCCTCAGTTTCTCCCAGTTTTCTACACGCTGTAAGAAGGAATGGGTCTCGGTGACATCATCAACTGGCAAGCCCATTACCTTTTGTGGTTCCGACCTGCCAAAGCCCATGGAGTTGATGGGGGGGAACATTACAGTGACGCACCACTTCCTGCCACACTTATTCCCCGTCTCTGCGTTCTGCCTGGGCTACGTCAGAGactctgGTGAATGTCCGGTGGTGGACTTTGAGTGTTTGGGCGGGCGCTGCCTGCCCCTGTCCTGGCGCTGTAACGGCCAGACAGAGTGTCTGGGTGAAGGGATGGGGCTGGGAACAGACGAGCAGGAATGTGACGGAGAGATCGAGATCCTGGATCCTGAGCAAGACAAAGTAGTggtaaccaccaccacaccagagtcctacatagagagagagagggagagggagggggagacaggaagagagaagagCGGGGGGAGGGATTGGGAAACGGCACCGGTTGAGGTGGAGAAGGaagtagaggaggatggggaCTATACCAAGGTAAAGGAGCCAGATAATCCTATGGAGGACTACTGGGAGTTCCTGCCTCGTCAACTCCCCAGCCCCCAGCCTCACAGAGCCCACCCCGGTCCCGGTGTGACCCAGGCCCCCACCGAGTGGCCGTGTGGCGGCCTCCTCCAAACCTTCTATGGGACGTTCGCCCCTCCTTCCATCAAGGGCCCCCCTCTGTTCTGTGTGTGGACCCTGGACCCCCAGGACTCCAGGCCTCTAAAGCTGGACCTGCAGCTGCTGGAACTGGGGCCTGGAGACACGGTCACTATCACCAACAGACAGCAGGGCACCGGGGAACTCATCAAAACTATCACCAGCGAGTCCAGCTACAAGGCCATCCAGGTTGAGTCCCGGACCGGCCTTCTCTCCCTGACCTATCACACGCTTCCCGGCTCGGAGGGGCTGGGCTTCAACGCCACCTACCGTGTCGGGGGCTACTGCCCCCCCTGGGAGGGTAAATGTGGGGGTGCCGCGGGGGGCTGCTACACCCAGGAACAGAAGTGTGACGGGCGCTGGGACTGTCCTGAGACGGGGCATGATGAGGCGGGATGCAGGGGGTGTCCCAGGGACCAGTTTGCTTGCGGAGGGGTGGGGCAGCGGGCGGTGCTGGCGGGTCATAACTTCATCGGGCGTCCGGTGTGCTTCCCTGCCAAGGAGAGGTGTAACTACCAGCTGTACTGTGCTGACGGGAGCGACGAAAAAGACTGTACCATATGTCAACCTGGGACCTTCCACTGCGACAGCAAcagGTGTGTGTTTGAGAGCTGGAGTTGtgacggccaggtggactgtaAGGACGGGACAGACGAGATGAACTGCACCATGACCCTGCCTCGAAAGGTCATCACCGCGGCAACCGTGGGCAGCCTGGTCTGTGGGCTGCTGCTGGTCATCGCTATGGGCTGCACCTGCAAGCTCTACTCACTGCGGACCCGAGAATACAGTATGTTTGCCCCAATCAGCCGCCAGGAGGCGGAGCTAATCCAGCAGCAGGCCCCTCCCTCCTATGGTCAATTGATCGCCCAGGGCATCATCCCTCCAGTGGAGGACTTCCCCACGGAGAACCCCAATGAGtcttcctctctttctctgagaGGTTTTCTCCAGCTTCTCAGACAGGATACTTCTAACTCTCCACGACGCCGACGCCGTCCCCGATTCATCCGCCGGGCTGTCCGTCGCATGCGGAGATGGGGCCTAATCCCCAGATCCGCCTCCAGGCCCTCCCAGCCATCCAGCTCTGCCCCCCAGCTGACAGAGGCCCCCTCCACTGGTGTGGATCCCAGTCAATCAACTCCCGCCACCACCTCATTGGCTGTGGAAGCCGTCAATCTGCCATTGCCACAGAAACTAGGCTTGCTCCCACAAACAGTGCAGTACCAGCCACCACCACCCCCCCACTTCCTTCCTCCACCCACTCTACTCCCTCCACCCATTGTCTCTACTCCAGCTACCCCCCAGAGCCCTCCAGTGGctgtcccccccacccccagcagCCCCTCCCTagcctctctcttccactctttgGGGCGCACTATCTCTCGCTTccgctcctccccttcctcctcctcccccaccaacTCACTGCCCCTCTCcacatccccctctttctcttcctcctctttggAGGACGAGGTGCTACTTATCCCCCTCTCCGAGGACACAACCCCAGAGGACGACGTGCCCCTGCTTACACTCGACCCCTGACTTGATCCAACACCCCTTCCCTAAATGATGACTCAAGCACAGGAGCACTGCaaggctccctctctctctctctctctctctctgtgttggtctGGTGCCTTGGAATTGCATTTGTACTAACTAAAGGAATCTAATATTCAATGCTTTTATGTTATTGAGTGTGGAAACTCCTAGAGaaagtgtgtgtatttgtgtgtgtgtgtgtgtagggtattTGTGTGTTGGATGTGCACTTATCCAGATATAGTCTGAAAGAGGTGAAATTTGCACAGAAAATCTCTCCCTCATGATCTAATTTAAGCAATGAGGCACCTCTggagtttgtggtatatggctaatataccacggttaagggctgttcttatgcaggACGCAACACGAAGTGCCTGGAtccagcccttagccgtggtatattggccatataccacaaaccccagaggttcattattgctattataaactggttaccaacgtaattacagcagtagaaataaatgttttgtcatacacgtggtatacagtctgatataccatggctttcagccaatcagcaatcAGGGCTCAAAACCACccggtttataatatataatttACTGTCAAGTGAATGATTGGTTTTAGCACGTGAAAGagttcatgtctttgtgtgacaGCATATGTGTGAATGCGTCATGTAAGGGTGAGCATATGGGGGCCAGTGTAAGGATATGTAGATGTCCTGTGTAGACACTATCCCATGTATAGTTCTCATCTCCCATCTAAGTGCCTTTTCAGAAGCTTGCTACAGTTGATGAATTTGAATGatgacacacatactgtacacactgtccCAAATATGTGGACAAAAAGGAACACCCACCTTCTCACACACAGACTGTGTTTTATATTGCTTTCATAATGGATAAATTGCATGTCAATTCTGCAAGCTGGCAATAATTTTTGGGGACCCTCCTGGTTAGTGTACGTATGGCATAACTGACGTGTATAGTTTCGTATGCACTTGCAAGTGTGATGTATGAATGTTTTATAATGTAGTTCTCTAGTAGACAAATTGTGTCTCGGCTCACAAGACAATCTCTCTTGGTGCCTGAGGTTGGGTTAGACCTGTGAAGTGCACAACCGCACACAGAAAGATGAGGCCCCCCAGGGCCCACGGTCACAACAACCCCGACTTAAATTCTCAGCCCTTTGTGAATGGAATCCACTCTACCACGCTTTCACACAGTGAACATATAGCAAATTAAGAGACTTTTTAGTCTGCCATTTTTAACATCGTATCTTTTATTAGTTTTTCCGCTTTTATCCTTCAGaaatgtactttaaaaaaaatcttaaattGTTGTTCTGTTTGCCTGGGTTGTACTGAATGTATTCAATTAAACATAGTGGTTGGAGGATGATATGTTTAAAACTTGCAATGTAGTGAtaaggttggagagagagattttACTAGGGTCTATTTCACTGTACATAGCAAAGATGTGGACAAATCCACAGAGATTAAACAATTTGCACTTTTA

Function

NR:

description
low-density lipoprotein receptor-related protein 10

GO: NA

KEGG:

id description
K20050 LRP3_10_12; low-density lipoprotein receptor-related protein 3/10/12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614948.2 False 4222 mRNA 0.52 10 17006102 17014685
XM_021614949.2 True 4548 mRNA 0.51 10 17006201 17014685

Neighbor

gene id symbol gene type direction distance location
LOC110531635 LOC106577792 coding upstream 28805 16966706 ~ 16977297 (+)
acin1b LOC106577794 coding upstream 52519 16926212 ~ 16953584 (+)
LOC118966193 NA coding upstream 73598 16932388 ~ 16932504 (+)
LOC118966194 NA coding upstream 77238 16928746 ~ 16928864 (+)
LOC118966195 NA coding upstream 78326 16927660 ~ 16927776 (+)
LOC110531641 NA coding downstream 90927 17105612 ~ 17123052 (+)
LOC118966007 NA coding downstream 129328 17144013 ~ 17185719 (+)
LOC118966008 NA coding downstream 187932 17202617 ~ 17222400 (+)
LOC118966176 NA coding downstream 226185 17240870 ~ 17242550 (+)
LOC118966167 NA coding downstream 239581 17254266 ~ 17265417 (+)
G776079 NA non-coding upstream 14835 16990894 ~ 16991267 (+)
G776047 NA non-coding upstream 95353 16908840 ~ 16910749 (+)
G776050 NA non-coding upstream 97529 16907735 ~ 16908573 (+)
LOC110531630 NA non-coding upstream 99577 16892343 ~ 16907677 (+)
G776092 NA non-coding downstream 6093 17020778 ~ 17021115 (+)
G776094 NA non-coding downstream 9056 17023741 ~ 17023965 (+)
G776102 NA non-coding downstream 23710 17038395 ~ 17038648 (+)
G776109 NA non-coding downstream 36125 17050810 ~ 17076496 (+)
G776112 NA non-coding downstream 41909 17056594 ~ 17059241 (+)
G775945 NA other upstream 322611 16683194 ~ 16683491 (+)
LOC110532939 NA other upstream 663292 16315734 ~ 16342810 (+)
LOC110532936 LOC106577844 other upstream 755238 16233342 ~ 16250864 (+)
G775306 NA other upstream 818652 16186276 ~ 16187450 (+)
G775142 NA other upstream 1139394 15866089 ~ 15866708 (+)
LOC110532942 LOC106577806 other downstream 282370 17292470 ~ 17305629 (+)
G776487 NA other downstream 365940 17380625 ~ 17394121 (+)
G776818 LOC106600668 other downstream 643512 17658197 ~ 17659145 (+)
G777111 NA other downstream 987204 18001889 ~ 18002182 (+)
G777113 NA other downstream 988582 18003267 ~ 18005668 (+)

Expression


Co-expression Network