LOC110531638 (LOC106577815)


Basic Information

Item Value
gene id LOC110531638
gene name LOC106577815
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 17028602 ~ 17043723 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614950.2
tgtgtgttTTGGTGAGTCTAGCTATCTACCAGTCAGAGATAGATGAGGAGGACGTACAGCCAGAGGAAACAGACACAACTCCTAACAGAGATGTCTGGTGGTCCCCTCTCGTGCTTCTCCAAACAGGGAATACtcctactctctatcctccaccATGggatcTGGGCTGAAGTCCCTCCGAAGGACCTGTATGGATTGAGGGGGGGTTTGGTGTGCCTGGCTGTATCAGAACCACCGCAGGAGCCTGGAAGACAAAGTTGGAAGGTCAATAGTACCATAATAGTTTCTGACAGAAAGGTCTCTCCTAAATACCAGGAGAAAGTGGAGTATAATCCACTGAACTACTCTCTGTGCATTAAGAATCTGAGTGAAAAAGACAGAGGAACTTACATTGCAACCTATGAGAAAAATTGGGAAGAGTTGACTACTACATACAGACTAACAGTACAGGAGCCTATATCCATGGTGGTGATCCAGAAGGAGATCACGCTGTTGGCCAACCAGTCCTGTTCAGTGTGGTTGATGTGCAACGTTTCAGTCTGCTCCAACATCTCCTACacctgggagagagggaaggaaacatACAGGGACGACCAGCAGATACACTTCTCTCTGTCACCAGCAGACGGAGACATCAGTGTAACCTGCACTGCCTCCAACACAGTCAGTGAGAAATCTGCCTCTACAACAGTAAAGTGTAGTAATGACACAACCATCCCAGGGCTGGTGTGGTGTATCATCTGCATTGTAGTGGTGTTGACCCTCATTGTAGCGGTGGCAGTGTATTGCTGCAGGGGCAGCCGTAACACGGACACAGTACATCAAAATGACAAGACAATATATGCGGATGTTATGGGCAGTACAATAAATAAAGATACAAGAGGGACAGTGGATGATCTGGCTGAACCAAGACTGAACAAGCCGCAGACTCTGTACGACGAGATCAAAGTTGGATGCCCAAAAGCGCCCTCTTCTGCCTACCAGGAAGTACTTGTGAGCTGAGCAGGATGTGTTCATAGGATGGGCCTTATATCTCTGCATCATCTGCATCCAAGGCTACAGTCTGTAGATGGATGTTACTGTTAACTTTTATCACGACTTGCACATTTCTGA
>XM_021614951.2
tctgtgtgttTTGGTGAGTCTAGCTATCTACCAGTCAGAGATAGATGAGGAGGACGTACAGCCAGAGGAAACAGACACAACTCCTAACAGAGATGTCTGGTGGTCCCCTCTCGTGCTTCTCCAAACAGGGAATACtcctactctctatcctccaccATGggatcTGGGCTGAAGTCCCTCCGAAGGACCTGTATGGATTGAGGGGGGGTTTGGTGTGCCTGGCTGTATCAGAACCACCGCAGGAGCCTGGAAGACAAAGTTGGAAGGTCAATAGTACCATAATAGTTTCTGACAGAAAGGTCTCTCCTAAATACCAGGAGAAAGTGGAGTATAATCCACTGAACTACTCTCTGTGCATTAAGAATCTGAGTGAAAAAGACAGAGGAACTTACATTGCAACCTATGAGAAAAATTGGGAAGAGTTGACTACTACATACAGACTAACAGTACAGGAGCCTATATCCATGGTGGTGATCCAGAAGGAGATCACGCTGTTGGCCAACCAGTCCTGTTCAGTGTGGTTGATGTGCAACGTTTCAGTCTGCTCCAACATCTCCTACacctgggagagagggaaggaaacatACAGGGACGACCAGCAGATACACTTCTCTCTGTCACCAGCAGACGGAGACATCAGTGTAACCTGCACTGCCTCCAACACAGTCAGTGAGAAATCTGCCTCTACAACAGTAAAGTGTAGTAATGACACAACCATCCCAGGGCTGGTGTGGTGTATCATCTGCATTGTAGTGGTGTTGACCCTCATTGTAGCGGTGGCAGTGTATTGCTGCAGGGGCAGCCGTAACACGGTACATCAAAATGACAAGACAATATATGCGGATGTTATGGGCAGTACAATAAATAAAGATACAAGAGGGACAGTGGATGATCTGGCTGAACCAAGACTGAACAAGCCGCAGACTCTGTACGACGAGATCAAAGTTGGATGCCCAAAAGCGCCCTCTTCTGCCTACCAGGAAGTACTTGTGAGCTGAGCAGGATGTGTTCATAGGATGGGCCTTATATCTCTGCATCATCTGCATCCAAGGCTACAGTCTGTAGATGGATGTTACTGTTAACTTTTATCACGACTTGCACATTTCTGA
>XM_021614952.2
tctctcttctctgtgtgttTTGGTGAGTCTAGCTATCTACCAGTCAGAGATAGATGAGGAGGACGTACAGCCAGAGGAAACAGACACAACTCCTAACAGAGATGTCTGGTGGTCCCCTCTCGTGCTTCTCCAAACAGGGAATACtcctactctctatcctccaccATGAGCCTATATCCATGGTGGTGATCCAGAAGGAGATCACGCTGTTGGCCAACCAGTCCTGTTCAGTGTGGTTGATGTGCAACGTTTCAGTCTGCTCCAACATCTCCTACacctgggagagagggaaggaaacatACAGGGACGACCAGCAGATACACTTCTCTCTGTCACCAGCAGACGGAGACATCAGTGTAACCTGCACTGCCTCCAACACAGTCAGTGAGAAATCTGCCTCTACAACAGTAAAGTGTAGTAATGACACAACCATCCCAGGGCTGGTGTGGTGTATCATCTGCATTGTAGTGGTGTTGACCCTCATTGTAGCGGTGGCAGTGTATTGCTGCAGGGGCAGCCGTAACACGGACACAGTACATCAAAATGACAAGACAATATATGCGGATGTTATGGGCAGTACAATAAATAAAGATACAAGAGGGACAGTGGATGATCTGGCTGAACCAAGACTGAACAAGCCGCAGACTCTGTACGACGAGATCAAAGTTGGATGCCCAAAAGCGCCCTCTTCTGCCTACCAGGAAGTACTTGTGAGCTGAGCAGGATGTGTTCATAGGATGGGCCTTATATCTCTGCATCATCTGCATCCAAGGCTACAGTCTGTAGATGGATGTTACTGTTAACTTTTATCACGACTTGCACATTTCTGA

Function

NR:

description
SLAM family member 8-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614950.2 False 1113 mRNA 0.47 7 17028602 17043712
XM_021614951.2 False 1109 mRNA 0.47 7 17028602 17043714
XM_021614952.2 True 830 mRNA 0.48 6 17028602 17043723

Neighbor

gene id symbol gene type direction distance location
LOC110531636 LOC106577791 coding downstream 25509 16982710 ~ 17003093 (-)
LOC110531634 LOC106577795 coding downstream 62379 16953773 ~ 16966223 (-)
LOC110531631 dhrs4 coding downstream 114654 16908838 ~ 16913948 (-)
LOC110531628 cideb coding downstream 136892 16886528 ~ 16891710 (-)
LOC110531626 LOC106608856 coding downstream 200019 16827053 ~ 16828583 (-)
LOC110532941 LOC106577784 coding upstream 7026 17050749 ~ 17064251 (-)
LOC110531640 LOC106577784 coding upstream 33207 17076930 ~ 17080885 (-)
LOC110531642 ylat1 coding upstream 262567 17306290 ~ 17317711 (-)
LOC110531643 LOC106577781 coding upstream 277708 17321431 ~ 17327614 (-)
LOC110531645 LOC106577780 coding upstream 286611 17330334 ~ 17339133 (-)
G776353 NA non-coding downstream 5620 17022644 ~ 17022982 (-)
G776352 NA non-coding downstream 10366 17018009 ~ 17018236 (-)
G776350 NA non-coding downstream 12440 17015950 ~ 17016162 (-)
G776347 NA non-coding downstream 24031 17004342 ~ 17004571 (-)
G776346 NA non-coding downstream 24523 17003796 ~ 17004079 (-)
G776372 NA non-coding upstream 1541 17045264 ~ 17045470 (-)
G776377 NA non-coding upstream 6064 17049787 ~ 17050055 (-)
G776393 NA non-coding upstream 71862 17115585 ~ 17115820 (-)
G776396 NA non-coding upstream 84874 17128597 ~ 17129233 (-)
G776355 NA other downstream 2789 17025380 ~ 17025813 (-)
G776340 LOC106577790 other downstream 13917 17010012 ~ 17014685 (-)
G776294 NA other downstream 162568 16865467 ~ 16866034 (-)
G775532 NA other downstream 1115308 15912836 ~ 15913294 (-)
G776461 NA other upstream 201711 17245434 ~ 17245797 (-)
G776652 NA other upstream 275892 17319615 ~ 17320373 (-)
G776642 NA other upstream 301755 17345478 ~ 17354347 (-)
LOC110532943 LOC106577805 other upstream 373924 17402378 ~ 17547902 (-)
G776714 NA other upstream 414954 17458677 ~ 17463822 (-)

Expression


Co-expression Network