XLOC_002662 (pum3)


Basic Information

Item Value
gene id XLOC_002662
gene name pum3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 15321522 ~ 15340450 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004945
GCCAACATTAACTACGACATTTTTCAGATGCCGTAAAGTTGTTTGTCTGCACACATGGTCCATTATGGAGGGTAAACCAAGAAAGAAATCATTCACTCCAAGAGACGGAAAGAAACCTTCATTCAAATCCAAagGTAAACCTGGAGGAAAACCACAAGGCAAACGGCCATTCAAACCTCACAACAATGACAAAGGCAAAGGTTTTAGAAAGTCAGGTGGAGAAGGAGGACCACAGAAGTTCAACAGAAAGCCGACAGATGGAAAATTTGCCAAGAAGAGAAAATTTCCTGGAGACAGAATCAAACAAGAGGAAGGTGATGAGCGCAAAAAACCTAAATGGGATgagtttaaacaaaaaaagaaagaactgAAGCTGAATCGTCAGCAGACTGATAGAAAAGAGAGCTACCAGATCGTAAGCAGAGCAAAGCAAGTGTGGGAGATGGTAAGACGGAAAGACTGTGATAAGCAAAAAAGGACCAAACTGATGAAAGAGCTGCAGGATCTTGTAAAAGGCAAAATTAAAACGATTGCATTTGCGCATGATTCCACGCGGGTGCTTcagtgttttattcaatttggCAGTGATAAGCAGAGAAAGGAGGTGTTTGATGAACTCAAAGAACACATTGTGGAGTTGAGTAAATCAAAATATGCCAGAAACATTGTAAAGAAGTTCCTAATGTATGGGAGTAAAGAGCAGGTAGGTGAAGTGATGTTGGCTTTTAAAGGGAAAGTCAGGCAGATGCTCAGACACTCGGAGGCGTCTTCAGTTGTGGAATACGCTTATAATGATAAAGCCATCCTCTCTCAGAGACTCATGCTCACTGAGGAGCTCTACGGAAACACGTTCACCGTCTTAAAGTCATCAGTTTGTCCTACGTTAGAGAAAGTTCTTGAAGCAAATCCAGGGAAATTGGAGAGCATCTTGGATGAAATGAAGCAGATCCTTACACCCATGGCACAGAAAGAGGCTGTCATTAAACATTCATTGGTTCACAAAGTTTTCCTGGACTTCTTTGAGCACGCTCCGGACAAACAGAGAACGGAGATGATTGAGTCGATCAGAGAGGCCGTCGTGTACATGGCACACACACACGATGGAGCCAGAGTCACCATGCACTGTTTATGGCACGGCACAACTAAGGACCGAAAGGTTATAGTAAAAACGATGAAATCGTATATTGCAAAGTTTGCCATGGGTGAATATGCTCATCTTGTACTTTTGGCTGCATTCGATTGCATTGATGACACCAAGCTGGTTAAACAAATTATTATCTCAGAAATGGTTAGTTCCTTATCTGAAATAATCAGCAATAAACACGGTAAAAAGGTGCTGCTTTACCTGCTGAGTCCTAGAGACCCTGCTCACCTCTTACCTGAAATCATTCAAGTGCTGGAGAAAGGGGATGGCAATGCGCACAGTAAGAAGGATGTGCTGATCAGGAGAAAGGAGCTGCTGGAGGCCGCGTCTCcttctctgctgaatcatctgtgtgAAAACGCTCAGTCTATGGTCATGGATAAATCCTGCTGTGTGGTGGTGAGCGACATACTGGGCTCTGCTGTTGGAGATCTCAGACCTGCTATGGAGgcagtggcagctctggcagATGGACCCCTTATACCAGGTGGAAAGGATGGACAGCTGCATATGGCTGAACACCCCGCTGGTCATCTGGTGCTGAAATGGTTGATCGAGCAGGACACCAAGATGAAGGACACAGAGAGAGAGGAGCGTTTTTCCAGGATTCTTCTGGAGAAGGTTGGGTTGGagaacctcaagacatgggcttCGGTCAACCGTGGTGCCATTATTCTTTGTTGTCTTCTCCAGAGCGCAGATGAAAGTGTTGCTGAAGAAGTGAAAGCTATGCTGAAATCCAGCATTCCTGAGCTACAGCGGCTCCAGAACTCAAAAGGAATTGAGGTTCTGCTTGAAAAACTTGCATAAAAAAGTTCGATCTATCAAtgatttttctttgttttcttcagtttttttaaaattgtgcatTTCTATGATGTTGTATGTAAATACAAATTACACACAATGAGACCTGGA
>TCONS_00004946
GTTTAGGATTCCAACACTGTTGCACACTGTCGCAAACGGCCAACATTAACTACGACATTTTTCAGATGCCGTAAAGTTGTTTGTCTGCACACATGGGTGAGTATTGAAACGTGTTCCATCGTATTTGGGAAAAACAACAAGATTTACTCTAGTTTAAGACGAGAAATGTTCTAACTTGCAAGCGTATGTGTAACACGTATTAGGCTACTTGCATGTCAATATTTTTAGACTTTAGTATGAGCAAATATAGTAAATTATATAGTTTCATCTCTACGGTTGCGTGAAGGCATAACGTAACATCTTTTgcttttgtaatttattaaaaatctaaCAATTAATCAACGATTTACAGTCCATTATGGAGGGTAAACCAAGAAAGAAATCATTCACTCCAAGAGACGGAAAGAAACCTTCATTCAAATCCAAagGTAAACCTGGAGGAAAACCACAAGGCAAACGGCCATTCAAACCTCACAACAATGACAAAGGCAAAGGTTTTAGAAAGTCAGGTGGAGAAGGAGGACCACAGAAGTTCAACAGAAAGCCGACAGATGGAAAATTTGCCAAGAAGAGAAAATTTCCTGGAGACAGAATCAAACAAGAGGAAGGTGATGAGCGCAAAAAACCTAAATGGGATgagtttaaacaaaaaaagaaagaactgAAGCTGAATCGTCAGCAGACTGATAGAAAAGAGAGCTACCAGATCGTAAGCAGAGCAAAGCAAGTGTGGGAGATGGTAAGACGGAAAGACTGTGATAAGCAAAAAAGGACCAAACTGATGAAAGAGCTGCAGGATCTTGTAAAAGGCAAAATTAAAACGATTGCATTTGCGCATGATTCCACGCGGGTGCTTcagtgttttattcaatttggCAGTGATAAGCAGAGAAAGGAGGTGTTTGATGAACTCAAAGAACACATTGTGGAGTTGAGTAAATCAAAATATGCCAGAAACATTGTAAAGAAGTTCCTAATGTATGGGAGTAAAGAGCAGGTAGGTGAAGTGATGTTGGCTTTTAAAGGGAAAGTCAGGCAGATGCTCAGACACTCGGAGGCGTCTTCAGTTGTGGAATACGCTTATAATGATAAAGCCATCCTCTCTCAGAGACTCATGCTCACTGAGGAGCTCTACGGAAACACGTTCACCGTCTTAAAGTCATCAGTTTGTCCTACGTTAGAGAAAGTTCTTGAAGCAAATCCAGGGAAATTGGAGAGCATCTTGGATGAAATGAAGCAGATCCTTACACCCATGGCACAGAAAGAGGCTGTCATTAAACATTCATTGGTTCACAAAGTTTTCCTGGACTTCTTTGAGCACGCTCCGGACAAACAGAGAACGGAGATGATTGAGTCGATCAGAGAGGCCGTCGTGTACATGGCACACACACACGATGGAGCCAGAGTCACCATGCACTGTTTATGGCACGGCACAACTAAGGACCGAAAGGTTATAGTAAAAACGATGAAATCGTATATTGCAAAGTTTGCCATGGGTGAATATGCTCATCTTGTACTTTTGGCTGCATTCGATTGCATTGATGACACCAAGCTGGTTAAACAAATTATTATCTCAGAAATGGTTAGTTCCTTATCTGAAATAATCAGCAATAAACACGGTAAAAAGGTGCTGCTTTACCTGCTGAGTCCTAGAGACCCTGCTCACCTCTTACCTGAAATCATTCAAGTGCTGGAGAAAGGGGATGGCAATGCGCACAGTAAGAAGGATGTGCTGATCAGGAGAAAGGAGCTGCTGGAGGCCGCGTCTCcttctctgctgaatcatctgtgtgAAAACGCTCAGTCTATGGTCATGGATAAATCCTGCTGTGTGGTGGTGAGCGACATACTGGGCTCTGCTGTTGGAGATCTCAGACCTGCTATGGAGgcagtggcagctctggcagATGGACCCCTTATACCAGGTGGAAAGGATGGACAGCTGCATATGGCTGAACACCCCGCTGGTCATCTGGTGCTGAAATGGTTGATCGAGCAGGACACCAAGATGAAGGACACAGAGAGAGAGGAGCGTTTTTCCAGGATTCTTCTGGAGAAGGTTGGGTTGGagaacctcaagacatgggcttCGGTCAACCGTGGTGCCATTATTCTTTGTTGTCTTCTCCAGAGCGCAGATGAAAGTGTTGCTGAAGAAGTGAAAGCTATGCTGAAATCCAGCATTCCTGAGCTACAGCGGCTCCAGAACTCAAAAGGAATTGAGGTTCTGCTTGAAAAACTTGCATAAAAAAGTTCGATCTATCAAtgatttttctttgttttcttcagtttttttaaaattgtgcatTTCTATGATGTTGTATGTAAATACAAATTACACACAATGAGACCTGGA
>TCONS_00004947
TTCAGATGCCGTAAAGTTGTTTGTCTGCACACATGGTCCATTATGGAGGGTAAACCAAGAAAGAAATCATTCACTCCAAGAGACGGAAAGAAACCTTCATTCAAATCCAAagGTAAACCTGGAGGAAAACCACAAGGCAAACGGCCATTCAAACCTCACAACAATGACAAAGGCAAAGGTTTTAGAAAGTCAGGTGGAGAAGGAGGACCACAGAAGTTCAACAGAAAGCCGACAGATGGAAAATTTGCCAAGAAGAGAAAATTTCCTGGAGACAGAATCAAACAAGAGGAAGGTGATGAGCGCAAAAAACCTAAATGGGATgagtttaaacaaaaaaagaaagaactgAAGCTGAATCGTCAGCAGACTGATAGAAAAGAGAGCTACCAGATCGTAAGCAGAGCAAAGCAAGTGTGGGAGATGGTAAGACGGAAAGACTGTGATAAGCAAAAAAGGACCAAACTGATGAAAGAGCTGCAGGATCTTGTAAAAGGCAAAATTAAAACGATTGCATTTGCGCATGATTCCACGCGGGTGCTTcagtgttttattcaatttggCAGTGATAAGCAGAGAAAGGAGGTGTTTGATGAACTCAAAGAACACATTGTGGAGTTGAGTAAATCAAAATATGCCAGAAACATTGTAAAGAAGTTCCTAATGTATGGGAGTAAAGAGCAGGTAGGTGAAGTGATGTTGGCTTTTAAAGGGAAAGTCAGGCAGATGCTCAGACACTCGGAGGCGTCTTCAGTTGTGGAATACGCTTATAATGATAAAGCCATCCTCTCTCAGAGACTCATGCTCACTGAGGAGCTCTACGGAAACACGTTCACCGTCTTAAAGTCATCAGTTTGTCCTACGTTAGAGAAAGTTCTTGAAGCAAATCCAGGGAAATTGGAGAGCATCTTGGATGAAATGAAGCAGATCCTTACACCCATGGCACAGAAAGAGGCTGTCATTAAACATTCATTGGTTCACAAAGTTTTCCTGGACTTCTTTGAGCACGCTCCGGACAAACAGAGAACGGAGATGATTGAGTCGATCAGAGAGGCCGTCGTGTACATGGCACACACACACGATGGAGCCAGAGTCACCATGCACTGTTTATGGCACGGCACAACTAAGGACCGAAAGGTTATAGTAAAAACGATGAAATCGTATATTGCAAAGTTTGCCATGGGTGAATATGCTCATCTTGTACTTTTGGCTGCATTCGATTGCATTGATGACACCAAGCTGGTTAAACAAATTATTATCTCAGAAATGGTTAGTTCCTTATCTGAAATAATCAGCAATAAACACGGTAAAAAGGTGCTGCTTTACCTGCTGAGTCCTAGAGACCCTGCTCACCTCTTACCTGAAATCATTCAAGTGCTGGAGAAAGGGGATGGCAATGCGCACAGTAAGAAGGATGTGCTGATCAGGAGAAAGGAGCTGCTGGAGGCCGCGTCTCcttctctgctgaatcatctgtgtgAAAACGCTCAGTCTATGGTCATGGATAAATCCTGCTGTGTGGTGGTGAGCGACATACTGGGCTCTGCTGTTGGAGATCTCAGACCTGCTATGGAGgcagtggcagctctggcagATGGACCCCTTATACCAGGTGGAAAGGATGGACAGCTGCATATGGCTGAACACCCCGCTGGTCATCTGGTGCTGAAATGGTTGATCGAGCAGGACACCAAGATGAAGGACACAGAGAGAGAGGGCAACGTTTTTCCAGGATTCTTCTGGAGAAGGTTGGGTTGGagaacctcaagacatgggcttCGGTCAACCGTGGTGCCATTATTCTTTGTTGTCTTCTCCAGAGCGCAGATGAAAGTGTTGCTGAAGAAGTGAAAGCTATGCTGAAATCCAGCATTCCTGAGCTACAGCGGCTCCAGAACTCAAAAGGAATTGAGGTTCTGCTTGAAAAACTTGCATAAAAAAGTTCGATCTATCAAtgatttttctttgttttcttcagtttttttaaaattgtgcatTTCTATGATGTTGTATGTAAATACAAATTACACACAATGAGA
>TCONS_00004948
TCGTATTTGGGAAAAACAACAAGATTTACTCTAGTTTAAGACGAGAAATGTTCTAACTTGCAAGCGTATGTGTAACACGTATTAGGCTACTTGCATGTCAATATTTTTAGACTTTAGTATGAGCAAATATAGTAAATTATATAGTTTCATCTCTACGGTTGCGTGAAGGCATAACGTAACATCTTTTgcttttgtaatttattaaaaatctaaCAATTAATCAACGATTTACAGTCCATTATGGAGGGTAAACCAAGAAAGAAATCATTCACTCCAAGAGACGGAAAGAAACCTTCATTCAAATCCAAagGTAAACCTGGAGGAAAACCACAAGGCAAACGGCCATTCAAACCTCACAACAATGACAAAGGCAAAGGTTTTAGAAAATTGCATTTGCGCATGATTCCACGCGGGTGCTTcagtgttttattcaatttggCAGTGATAAGCAGAGAAAGGAGGTGTTTGATGAACTCAAAGAACACATTGTGGAGTTGAGTAAATCAAAA
>TCONS_00004949
ACACATGGGTGAGTATTGAAACGTGTTCCATCGTATTTGGGAAAAACAACAAGATTTACTCTAGTTTAAGACGAGAAATGTTCTAACTTGCAAGCGTATGTGTAACACGTATTAGGCTACTTGCATGTCAATATTTTTAGACTTTAGTATGAGCAAATATAGTAAATTATATAGTTTCATCTCTACGGTTGCGTGAAGGCATAACGTAACATCTTTTgcttttgtaatttattaaaaatctaaCAATTAATCAACGATTTACAGTCCATTATGGAGGGTAAACCAAGAAAGAAATCATTCACTCCAAGAGACGGAAAGAAACCTTCATTCAAATCCAAagGTAAACCTGGAGGAAAACCACAAGGCAAACGGCCATTCAAACCTCACAACAATGACAAAGGCAAAGGTTTTAGAAAGTCAGGTGGAGAAGGAGGACCACAGAAGTTCAACAGAAAGCCGACAGATGGAAAATTTGCCAAGAAGAGAAAATTTCCTGGAGACAGAATCAAACAAGAGGAAGGTGATGAGCGCAAAAAACCTAAATGGGATgagtttaaacaaaaaaagaaagaactgAAGCTGAATCGTCAGCAGACTGATAGAAAAGAGAGCTACCAGATCGTAAGCAGAGCAAAGCAAGTGTGGGAGATGGTAAGACGGAAAGACTGTGATAAGCAAAAAAGGACCAAACTGATGAAAGAGCTGCAGGATCTTGTAAAAGGCAAAATTAAAACGATTGCATTTGCGCATGATTCCACGCGGGTGCTTcagtgttttattcaatttggCAGTGATAAGCAGAGAAAGGAGGTGTTTGATGAACTCAAAG

Function

symbol description
pum3 Predicted to enable DNA binding activity and RNA binding activity. Acts upstream of or within germ cell migration. Predicted to be located in chromosome. Is expressed in several structures, including digestive system; female organism; immature eye; mesoderm; and nervous system.

GO: NA

KEGG: NA

ZFIN:

id description

Ensembl:

ensembl_id ENSDARG00000087779

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004945 False 2062 mRNA 0.44 18 15321522 15340412
TCONS_00004946 False 2356 mRNA 0.42 17 15321522 15340450
TCONS_00004947 False 2036 mRNA 0.44 18 15321528 15340390
TCONS_00004948 False 509 processed_transcript 0.36 4 15337310 15340332
TCONS_00004949 True 829 mRNA 0.38 5 15337433 15340362

Neighbor

gene id symbol gene type direction distance location
XLOC_002661 spp1 coding downstream 192751 15120711 ~ 15128771 (-)
XLOC_002660 CT027832.1 coding downstream 235225 15082410 ~ 15086297 (-)
XLOC_002659 cldn23b coding downstream 267908 15050469 ~ 15053614 (-)
XLOC_002658 cldn23a coding downstream 272741 15046837 ~ 15048781 (-)
XLOC_002656 NA coding downstream 278774 15031006 ~ 15042748 (-)
XLOC_002663 sgtb coding upstream 41522 15381972 ~ 15405564 (-)
XLOC_002664 smc5 coding upstream 277291 15617741 ~ 15644974 (-)
XLOC_002665 mamdc2b coding upstream 308407 15648857 ~ 15672862 (-)
XLOC_002666 NA coding upstream 376289 15716739 ~ 15724104 (-)
XLOC_002667 tjp2a coding upstream 475415 15815865 ~ 15879569 (-)
XLOC_002657 NA non-coding downstream 286562 15032972 ~ 15034960 (-)
XLOC_002653 CT027820.1 non-coding downstream 589123 14732283 ~ 14732399 (-)
XLOC_002648 BX000705.1 non-coding downstream 1389826 13931569 ~ 13931696 (-)
XLOC_002673 NA non-coding upstream 1665775 17006225 ~ 17010898 (-)
XLOC_002674 NA non-coding upstream 1676349 17016799 ~ 17027111 (-)
XLOC_002676 NA non-coding upstream 1745074 17085524 ~ 17088911 (-)
XLOC_002678 BX324123.4 non-coding upstream 1763848 17104298 ~ 17132910 (-)

Expression


Co-expression Network