XLOC_026620 (tubg1)


Basic Information

Item Value
gene id XLOC_026620
gene name tubg1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 37059803 ~ 37082618 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051857
GCGCAGTGGGCGTCCGATAGGCCGTTGCTGTTGGAGCGGGAACACGCATAGTGGTTGACTGACAGCAGAACGTCTCTCACATTTACTGATCGTACAGCTGAAATAACAGCAGGACGGGATGCCTCGAGAAATCATCACCCTGCAGCTCGGACAGTGCGGGAACCAGATTGGTTTTGAGTTTTGGAAGCAGTTGTGTGCTGAGCATGGCATCAGTCCAGAGGGCATCGTAGAGGAGTTTGCCACTGAAGGCACTGACCGGAAAGATGTCTTCTTCTATCAGGCAGATGATGAGCACTATATTCCTCGTGCTGTGCTGCTTGACCTGGAGCCCAGAGTCATCCACACCATCCTGAACTCCCCTTATGCCAACCTGTACAACCCGGAGAACATCTACCTGTCTGAGCACGGCGGAGGAGCTGGAAACAACTGGGCCAGTGGCTTCTCTCAGGGAGAGAAAATCCACGAGGACATCTTTGACATTATCGACCGAGAGGCAGATGGCAGTGACAGTCTGGAGgggTTTGTGCTTTGCCACTCTATTGCCGGAGGCACAGGATCAGGTCTGGGATCTTACCTACTTGAACGACTGAATGACAGGTATCCTAAAAAACTGGTTCAGACCTATTCGGTCTTTCCTAACCAGGATGAGATGAGTGATGTTGTCGTACAGCCATATAATTCTCTTCTGACGCTAAAGAGACTGACCCAGAATGCAGACTGTGTGGTTGTGCTGGACAACACGGCTTTGAACCGAATCGCCACAGACCGACTGCACATTCAAAACCCTTCATTCTCTCAGATCAACCAACTGGTGTCCACCATAATGTCAGCAAGCACAACAACCCTCCGTTACCCTGGATACATGAACAATGACCTGATTGGACTGATTGCATCCCTCATCCCCACTCCTCGCCTCCACTTCCTCATGACTGGATACACACCGCTGACCACCGATCAGTCTGTGGCAAGCGTGAGGAAGACTACAGTTCTGGATGTGATGAGGAGGCTCCTGCAGCCTAAAAATGTCATGGTGTCCACAGGCCGAGACCGTCAGACCAACCACTGCTACATCGCCATCCTCAACATCATCCAGGGAGAGGTGGACCCCACACAGGTCCATAAGAGTCTCCAGAGAATCAGGGAGAGGAAGTTGGCTAATTTCATCCCATGGGGTCCTGCTAGTATCCAGGTTGCACTGTCCCGCAGATCTCCCTACCTGCCCTCAGCTCACCGCGTCAGTGGACTTATGATGGCCAATCACACCAGCATCTCTTCATTGTTTGAGCGCACGTGTCGTCAGTATGATAAGCTGAGGAAGAGGGAGGCCTTCCTCGAGCAGTTCAGGAAGGAGGACATATTCAAGGACAACTTTGATGAGCTGGATAACTCTCGAGAAGTGGTTCAGCAGCTGGTGGACGAGTACAGCGCCGCCACACGTCCCGACTACATCTCCTGGGGCACACAAGAGCAGTGAAACCTCTTTCACAACTCCGAAACTCATCCTGTAAAATATGCACACCAACTCCAGTAGAACAGAATAACAGTAGTGGAAAAAAGGCTCTGATCTAAATCTTTCATGGCTCATCAGTCACACTGTACCTCCAGAGCCTCACtcgtgtgtatgtgtataaacAAGTGATTTGTCATATTTACAAGACTATAGAAGAGTTCTTCATGACCTGGTGCCTCTATCCTGAGCTATAACTTTCACTTTTGTctcagtttctctctctctctctctctctctctctcatggaTTTCCTGCGTTTCTTTTGATCAGAGAATTTATGGCTCCGTCTTAATCTATTTTTGTACTGCACTTTGCACTCTTCAGCACGAAATCTACATCAATCGACGTCAAGGTGGCCTGTGCacaaacttctctgaccacacacacacacacacacacacactggacgtCTGCACCGATAAGACTGGGTGGTCTCAGAATGAATGTAACCGTAGGAGGGAGTGTGAAAGATTAAGCCTCTTAGAAAAGATCAGACTTCTGAATGCTCCGTCAAACTCCCTCACATTCACACTTGCATGCTTTTAGACAAAAGGCGCTGGCTTTCAGGGGATAAGACTATGATTGTGCGATTGAAGCCGCTTTTTCTCTTGGTCTCGTAGTCATGGATTTTTCTAGAAGGTTATCTTAAGAGTTTTGAGAGGCGATCAGTGAAGTCAAGTGTTATGCTGTACCTCAAGCCATCCAATCGGTGATGTTTTTTCTCTAGTCTATAGAATCAATGATGTTACAGTACCTCAACGTCTGGCAGACTCAGTCATACAGCACAGTCCCAACACATCGCCTTCATCTACTTCTGCTCCAGAAGCTGAACCTTCACGTGCCAGATGACTTTCCCTctgttttgtctctctctctcttcagttgccacattgttattattaaggTTATACTCTGTATATAGTTTGCTGTCGGATTTGATgcatttactgaataaatgtttttgtacAAGAA
>TCONS_00051858
GCGCAGTGGGCGTCCGATAGGCCGTTGCTGTTGGAGCGGGAACACGCATAGTGGTTGACTGACAGCAGAACGTCTCTCACATTTACTGATCGTACAGCTGAAATAACAGCAGGACGGGATGCCTCGAGAAATCATCACCCTGCAGCTCGGACAGTGCGGGAACCAGATTGGTTTTGAGTTTTGGAAGCAGTTGTGTGCTGAGCATGGCATCAGTCCAGAGGGCATCGTAGAGGAGTTTGCCACTGAAGGCACTGACCGGAAAGATGTCTTCTTCTATCAGGCAGATGATGAGCACTATATTCCTCGTGCTGTGCTGCTTGACCTGGAGCCCAGAGTCATCCACACCATCCTGAACTCCCCTTATGCCAACCTGTACAACCCGGAGAACATCTACCTGTCTGAGCACGGCGGAGGAGCTGGAAACAACTGGGCCAGTGGCTTCTCTCAGGGAGAGAAAATCCACGAGGACATCTTTGACATTATCGACCGAGAGGCAGATGGCAGTGACAGTCTGGAGgggTTTGTGCTTTGCCACTCTATTGCCGGAGGCACAGGATCAGGTCTGGGATCTTACCTACTTGAACGACTGAATGACAGGTATCCTAAAAAACTGGTTCAGACCTATTCGGTCTTTCCTAACCAGGATGAGATGAGTGATGTTGTCGTACAGCCATATAATTCTCTTCTGACGCTAAAGAGACTGACCCAGAATGCAGACTGTGTGGTTGTGCTGGACAACACGGCTTTGAACCGAATCGCCACAGACCGACTGCACATTCAAAACCCTTCATTCTCTCAGATCAACCAACTGTTTCAGGAGGATGAAACATGGGGAGTCGCCGCTTCTGAAAGCTGTAATCGGCAGCGTGACATGCCGTCGTGTCACATTCTAATGACGAGGTGTCCACCATAATGTCAGCAAGCACAACAACCCTCCGTTACCCTGGATACATGAACAATGACCTGATTGGACTGATTGCATCCCTCATCCCCACTCCTCGCCTCCACTTCCTCATGACTGGATACACACCGCTGACCACCGATCAGTCTGTAAGTTCTTCAAGTGGTAATTTACATAAAGATTCTTTGCAAAGCGTAGCTCTTTTCTGAAGTCTAGTGATCTGCTCTCTGCTGTAAAACTTTTGAGTGAATGATTGAAAAGCTCATCATCAGTTGCATTCAGTTCACTGTTGATTCGTTGTGTTAACTTGTAGCAAGTTAACAATAGGTATAACCATTTTTATTAGCCATCTAATGAGCCATCTGTCATTCTGTAGATCTGTTTATCTGCCTTTTATAGCTTAAATGGCAGATGGACTATATATTGACTGAAAAAAGACTAAAACATACAattgtttttaacaaaatatgGTAAAgcttgttaaaaaaaagattgtaaTGTTAATTTGGGAATGCTCCCTTTGCCattaaagaaacaaaattctgttattgttttatatatgtcTCTTTCTTGGCTAAATACTGTGTAAATACTTAGGGTGTGCAATGTTTGGGGAACAAATTCCTCCATTTCTGTTATTTCCTATTATGTACTTCTGTGCATTTACCTGTTCATGTGTTTGCATGTTGTTCTTTCAATTTATTTGCCGGCCTCTTTCTGactgttcttttttatttgtctatGGGTGATTCTAgaatttttttgtacaattaaatttttttttaattaattttaataaacccA

Function

symbol description
tubg1 Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic sister chromatid segregation. Predicted to act upstream of or within cytoplasmic microtubule organization. Predicted to be located in cytoskeleton. Predicted to be part of gamma-tubulin complex. Predicted to be active in cytoplasm; microtubule cytoskeleton; and nucleus. Is expressed in blastomere; oocyte stage III; and oocyte stage V. Human ortholog(s) of this gene implicated in complex cortical dysplasia with other brain malformations 4; inclusion body myositis; and muscular disease. Orthologous to several human genes including TUBG1 (tubulin gamma 1).

GO:

id name namespace
GO:0000070 mitotic sister chromatid segregation biological_process
GO:0007017 microtubule-based process biological_process
GO:0007020 microtubule nucleation biological_process
GO:0007052 mitotic spindle organization biological_process
GO:0031122 cytoplasmic microtubule organization biological_process
GO:0000212 meiotic spindle organization biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0005813 centrosome cellular_component
GO:0005819 spindle cellular_component
GO:0000930 gamma-tubulin complex cellular_component
GO:0005874 microtubule cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-836 Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic sister chromatid segregation. Predicted to act upstream of or within cytoplasmic microtubule organization. Predicted to be located in cytoskeleton. Predicted to be part of gamma-tubulin complex. Predicted to be active in cytoplasm; microtubule cytoskeleton; and nucleus. Is expressed in blastomere; oocyte stage III; and oocyte stage V. Human ortholog(s) of this gene implicated in complex cortical dysplasia with other brain malformations 4; inclusion body myositis; and muscular disease. Orthologous to several human genes including TUBG1 (tubulin gamma 1).

Ensembl:

ensembl_id ENSDARG00000015610

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051857 False 2482 mRNA 0.48 11 37059803 37082618
TCONS_00051858 True 1705 mRNA 0.44 9 37064901 37082618

Neighbor

gene id symbol gene type direction distance location
XLOC_026619 NA coding downstream 87581 36969403 ~ 36972222 (-)
XLOC_026618 CT573704.1 coding downstream 91810 36967871 ~ 36967993 (-)
XLOC_026617 NA coding downstream 105715 36953625 ~ 36954088 (-)
XLOC_026616 cntnap1 coding downstream 115054 36904039 ~ 36944749 (-)
XLOC_026615 ramp2 coding downstream 213307 36836711 ~ 36846496 (-)
XLOC_026622 mlx coding upstream 52898 37135516 ~ 37148594 (-)
XLOC_026623 SRCIN1 coding upstream 153306 37235924 ~ 37476475 (-)
XLOC_026624 arf2a coding upstream 475873 37558491 ~ 37588855 (-)
XLOC_026625 NA coding upstream 498904 37581522 ~ 37584807 (-)
XLOC_026626 NA coding upstream 551482 37634100 ~ 37649389 (-)
XLOC_026612 FO744883.1 non-coding downstream 303654 36756033 ~ 36756149 (-)
XLOC_026606 NA non-coding downstream 472667 36583100 ~ 36587136 (-)
XLOC_026631 BX936420.1 non-coding upstream 1443361 38525979 ~ 38529416 (-)
XLOC_026636 NA non-coding upstream 1888817 38971435 ~ 38975698 (-)
XLOC_026637 NA non-coding upstream 2029696 39112314 ~ 39113547 (-)

Expression


Co-expression Network