LOC118966007


Basic Information

Item Value
gene id LOC118966007
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 17144013 ~ 17185719 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987477.1
ctcctctattcctctGACTCCCGAACTGAGGCAAAGCATCTCCTGGCACAGAGAGCTTAATCACCTGTCAACTGTATCTTCAATGGGTGGATCACACAATTAAATATTATCACGACAAGCATTGCCTCTGAAGCCTACCCACCTCCAGAGTCTGGTGACAAAGTCTGCCGCCCACCCGCAGGTGCTGGGGCGTGTGGAGAGACCACTCCTCAGAGCCAACatggggggaagaggagaggcgaTGATGGCGAAGAGCCGGGAGAAACACTCCAAAGTCTTGGACCTCATCAACCACTTCGAGGGGAACAGGGACACATCAAAAATACAAGACACCATTGCAAAAAGTAGCCTTATCGATAAAGGAACTCCTGCAAGGTATCAGCTGGAAACAAAGAAACAGAATCTAGATGATGAAGGCCTGCTCAGAAGATGGACCTTTGGAGAGAGAGATCACAGTAAGCTCAACAAAACCATTCTGATAGTGGGAGAGACAGGAACAGGGAAGTCAACTCTGGTCAATGCCATGGTCAATTACGTCCTGGGTGTAGAGTGGGAGGACAAAGTCTGGTTTGAGATTGTTGAAGAGGAAAAAAGACTTCAGACTGAAGCTCAAACTACAGCAGTCACTGTTTATGAGGTGTTTGGGTTTGAAGGCCAGAgagtccccttctctctcaccatcATTGACACTCCTGGGTATGGAAACACTAGAGGGATTAAAGAAGACCAACTGATCGCTAAAAAGTTGTTTGAGTTGTTTAGATCTGTAGATGGAATTGATCAACTTGATGCTGTGGGTTTAGTGATGAAGGCAGCTATGAATAGACTCAATGACAGACAGAAGTACATCTTCAATGCAGTTTTGTCTTTATTCGGCAAAGACATGGAGAAAAACATTGTAGCCCTTATCACACACTCAGATGGGAGGCCCCCAAAGAATGCCCTTGATGCTATTATAAGAGCAAACGTTCCCTGTGCTAAAAATGACAGGAATCGACCTGTTCATTTTGCGTTCAACAACTGTCAATGTGATGTATTTGATAAGGAATATGAGGATTATGAGGAATTTGTGTCTAATCAGAAGACAGTCTGGGACAAGGGAGCAAAGTCCATGGACAAGTTTTTCGAATATAAAATGGAACCAAAAAGCGTGAAGATGACTGAAGGAGTTCTGAGAGAGCGAGAACAACTGGAGGCGTGTGTCAGCAACCTACGCGAGCGGATCCACATGGATGATCTGAAGCAGGATGAAATCAAGCAGACTCAAAAAGAACTTTGTAAACACAAGAAAGACGTGGAGGAAAACAAGGACTTTACATATACTGTTGAAGAGCCGTACAAAGAGAAGTTACCTACAGAAGGGGGGAAGGCAACCACCTGCACAGTGTGTGAAGAGAACTGTCACTATCCAGGCTGCAGGTGTATCAAAGTTCTCTCATGGTGCAGTGCAATGAAGAACTACCACTGCACTGTGTGTACTGGCAAATGTCATTACACCAAGCATGTCAAAGGAAATGAAAAATATGTTCTCAAGACACGGGTGGTTCTCAGGACGCATGGGAAATTGAAAAAGAAGTATGATATTAATGAGAAGGCGGCTGGGGAGAAAGAGACACTGAtcagcaaacttcagacagagTTGGAGCAGTTCACACTCCAGAAGTTCAGACTGGTGGAGGAATCCTACCTGTGCCTCGTCATACTGGAAGAGATCGCTTTGAAGTCCCTCCCACTGTCCACTGCTCAGCATCTTGGCTTCCTGATTGACAAgatgacagagacaggaaacacagagaagGTTCAGAAACTGAAGGAGATGAAGAAAAGAGCTGAGGAGGAACTCAATGGAGCTTGACATTACTTTTAAGCTGGTGTGGGTAAAGGTTGGAAATATTTCTGGGGAAAGTAGTACTGAAACATATTCTGCAGCAAAAACAATGATGTGGGAAAACACTATGAACACATTGGATAGAGATGAAAAGAAAAGCGTTGTTCTTCTTCGTGCTTTTTCTCTCCAAGAAATACTGTACACTTTATGTTATCCAGATTATATGCCATATAAGACTTTATATAAGGAGGACTACATTTTAGTCCAGGTGAAATTAGATTTTTGTTTGTCACTGGAATTGCATTTTATCTGAACGTATCATTGATCATCTTAATTGAAAGTTAAGGGAATTTAACAATCAAAAATCTTTTATGATACGTTTGTTTTGAAGTGTTTCGCACATACTGATGAAAGTGGACACTGAACTATTTGTGTATGTTGTC
>XM_036987478.1
tgtgaacagagtgaccCATGGGGTTATcgtatgggcagAGCTTAATCACCTGTCAACTGTATCTTCAATGGGTGGATCACACAATTAAATATTATCACGACAAGCATTGCCTCTGAAGCCTACCCACCTCCAGAGTCTGGTGACAAAGTCTGCCGCCCACCCGCAGGTGCTGGGGCGTGTGGAGAGACCACTCCTCAGAGCCAACatggggggaagaggagaggcgaTGATGGCGAAGAGCCGGGAGAAACACTCCAAAGTCTTGGACCTCATCAACCACTTCGAGGGGAACAGGGACACATCAAAAATACAAGACACCATTGCAAAAAGTAGCCTTATCGATAAAGGAACTCCTGCAAGGTATCAGCTGGAAACAAAGAAACAGAATCTAGATGATGAAGGCCTGCTCAGAAGATGGACCTTTGGAGAGAGAGATCACAGTAAGCTCAACAAAACCATTCTGATAGTGGGAGAGACAGGAACAGGGAAGTCAACTCTGGTCAATGCCATGGTCAATTACGTCCTGGGTGTAGAGTGGGAGGACAAAGTCTGGTTTGAGATTGTTGAAGAGGAAAAAAGACTTCAGACTGAAGCTCAAACTACAGCAGTCACTGTTTATGAGGTGTTTGGGTTTGAAGGCCAGAgagtccccttctctctcaccatcATTGACACTCCTGGGTATGGAAACACTAGAGGGATTAAAGAAGACCAACTGATCGCTAAAAAGTTGTTTGAGTTGTTTAGATCTGTAGATGGAATTGATCAACTTGATGCTGTGGGTTTAGTGATGAAGGCAGCTATGAATAGACTCAATGACAGACAGAAGTACATCTTCAATGCAGTTTTGTCTTTATTCGGCAAAGACATGGAGAAAAACATTGTAGCCCTTATCACACACTCAGATGGGAGGCCCCCAAAGAATGCCCTTGATGCTATTATAAGAGCAAACGTTCCCTGTGCTAAAAATGACAGGAATCGACCTGTTCATTTTGCGTTCAACAACTGTCAATGTGATGTATTTGATAAGGAATATGAGGATTATGAGGAATTTGTGTCTAATCAGAAGACAGTCTGGGACAAGGGAGCAAAGTCCATGGACAAGTTTTTCGAATATAAAATGGAACCAAAAAGCGTGAAGATGACTGAAGGAGTTCTGAGAGAGCGAGAACAACTGGAGGCGTGTGTCAGCAACCTACGCGAGCGGATCCACATGGATGATCTGAAGCAGGATGAAATCAAGCAGACTCAAAAAGAACTTTGTAAACACAAGAAAGACGTGGAGGAAAACAAGGACTTTACATATACTGTTGAAGAGCCGTACAAAGAGAAGTTACCTACAGAAGGGGGGAAGGCAACCACCTGCACAGTGTGTGAAGAGAACTGTCACTATCCAGGCTGCAGGTGTATCAAAGTTCTCTCATGGTGCAGTGCAATGAAGAACTACCACTGCACTGTGTGTACTGGCAAATGTCATTACACCAAGCATGTCAAAGGAAATGAAAAATATGTTCTCAAGACACGGGTGGTTCTCAGGACGCATGGGAAATTGAAAAAGAAGTATGATATTAATGAGAAGGCGGCTGGGGAGAAAGAGACACTGAtcagcaaacttcagacagagTTGGAGCAGTTCACACTCCAGAAGTTCAGACTGGTGGAGGAATCCTACCTGTGCCTCGTCATACTGGAAGAGATCGCTTTGAAGTCCCTCCCACTGTCCACTGCTCAGCATCTTGGCTTCCTGATTGACAAgatgacagagacaggaaacacagagaagGTTCAGAAACTGAAGGAGATGAAGAAAAGAGCTGAGGAGGAACTCAATGGAGCTTGACATTACTTTTAAGCTGGTGTGGGTAAAGGTTGGAAATATTTCTGGGGAAAGTAGTACTGAAACATATTCTGCAGCAAAAACAATGATGTGGGAAAACACTATGAACACATTGGATAGAGATGAAAAGAAAAGCGTTGTTCTTCTTCGTGCTTTTTCTCTCCAAGAAATACTGTACACTTTATGTTATCCAGATTATATGCCATATAAGACTTTATATAAGGAGGACTACATTTTAGTCCAGGTGAAATTAGATTTTTGTTTGTCACTGGAATTGCATTTTATCTGAACGTATCATTGATCATCTTAATTGAAAGTTAAGGGAATTTAACAATCAAAAATCTTTTATGATACGTTTGTTTTGAAGTGTTTCGCACATACTGATGAAAGTGGACACTGAACTATTTGTGTATGTTGTC
>XM_036987480.1
CTCTGAAGCCTACCCACCTCCAGAGTCTGGTGACAAAGTCTGCCGCCCACCCGCAGGTGCTGGGGCGTGTGGAGAGACCACTCCTCAGAGCCAACatggggggaagaggagaggcgaTGATGGCGAAGAGCCGGGAGAAACACTCCAAAGTCTTGGACCTCATCAACCACTTCGAGGGGAACAGGGACACATCAAAAATACAAGACACCATTGCAAAAAGTAGCCTTATCGATAAAGGAACTCCTGCAAGGTATCAGCTGGAAACAAAGAAACAGAATCTAGATGATGAAGGCCTGCTCAGAAGATGGACCTTTGGAGAGAGAGATCACAGTAAGCTCAACAAAACCATTCTGATAGTGGGAGAGACAGGAACAGGGAAGTCAACTCTGGTCAATGCCATGGTCAATTACGTCCTGGGTGTAGAGTGGGAGGACAAAGTCTGGTTTGAGATTGTTGAAGAGGAAAAAAGACTTCAGACTGAAGCTCAAACTACAGCAGTCACTGTTTATGAGGTGTTTGGGTTTGAAGGCCAGAgagtccccttctctctcaccatcATTGACACTCCTGGGTATGGAAACACTAGAGGGATTAAAGAAGACCAACTGATCGCTAAAAAGTTGTTTGAGTTGTTTAGATCTGTAGATGGAATTGATCAACTTGATGCTGTGGGTTTAGTGATGAAGGCAGCTATGAATAGACTCAATGACAGACAGAAGTACATCTTCAATGCAGTTTTGTCTTTATTCGGCAAAGACATGGAGAAAAACATTGTAGCCCTTATCACACACTCAGATGGGAGGCCCCCAAAGAATGCCCTTGATGCTATTATAAGAGCAAACGTTCCCTGTGCTAAAAATGACAGGAATCGACCTGTTCATTTTGCGTTCAACAACTGTCAATGTGATGTATTTGATAAGGAATATGAGGATTATGAGGAATTTGTGTCTAATCAGAAGACAGTCTGGGACAAGGGAGCAAAGTCCATGGACAAGTTTTTCGAATATAAAATGGAACCAAAAAGCGTGAAGATGACTGAAGGAGTTCTGAGAGAGCGAGAACAACTGGAGGCGTGTGTCAGCAACCTACGCGAGCGGATCCACATGGATGATCTGAAGCAGGATGAAATCAAGCAGACTCAAAAAGAACTTTGTAAACACAAGAAAGACGTGGAGGAAAACAAGGACTTTACATATACTGTTGAAGAGCCGTACAAAGAGAAGTTACCTACAGAAGGGGGGAAGGCAACCACCTGCACAGTGTGTGAAGAGAACTGTCACTATCCAGGCTGCAGGTGTATCAAAGTTCTCTCATGGTGCAGTGCAATGAAGAACTACCACTGCACTGTGTGTACTGGCAAATGTCATTACACCAAGCATGTCAAAGGAAATGAAAAATATGTTCTCAAGACACGGGTGGTTCTCAGGACGCATGGGAAATTGAAAAAGAAGTATGATATTAATGAGAAGGCGGCTGGGGAGAAAGAGACACTGAtcagcaaacttcagacagagTTGGAGCAGTTCACACTCCAGAAGTTCAGACTGGTGGAGGAATCCTACCTGTGCCTCGTCATACTGGAAGAGATCGCTTTGAAGTCCCTCCCACTGTCCACTGCTCAGCATCTTGGCTTCCTGATTGACAAgatgacagagacaggaaacacagagaagGTTCAGAAACTGAAGGAGATGAAGAAAAGAGCTGAGGAGGAACTCAATGGAGCTTGACATTACTTTTAAGCTGGTGTGGGTAAAGGTTGGAAATATTTCTGGGGAAAGTAGTACTGAAACATATTCTGCAGCAAAAACAATGATGTGGGAAAACACTATGAACACATTGGATAGAGATGAAAAGAAAAGCGTTGTTCTTCTTCGTGCTTTTTCTCTCCAAGAAATACTGTACACTTTATGTTATCCAGATTATATGCCATATAAGACTTTATATAAGGAGGACTACATTTTAGTCCAGGTGAAATTAGATTTTTGTTTGTCACTGGAATTGCATTTTATCTGAACGTATCATTGATCATCTTAATTGAAAGTTAAGGGAATTTAACAATCAAAAATCTTTTATGATACGTTTGTTTTGAAGTGTTTCGCACATACTGATGAAAGTGGACACTGAACTATTTGTGTATGTTGTCTA

Function

NR:

description
uncharacterized protein LOC109906230

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987477.1 False 2271 mRNA 0.43 4 17144013 17185717
XM_036987478.1 False 2256 mRNA 0.43 4 17158483 17185717
XM_036987480.1 True 2148 mRNA 0.43 2 17168234 17185719

Neighbor

gene id symbol gene type direction distance location
LOC110531641 NA coding upstream 20961 17105612 ~ 17123052 (+)
LOC110531637 LOC106577790 coding upstream 129328 17006102 ~ 17014685 (+)
LOC110531635 LOC106577792 coding upstream 166716 16966706 ~ 16977297 (+)
LOC118966193 NA coding upstream 211509 16932388 ~ 16932504 (+)
LOC118966194 NA coding upstream 215149 16928746 ~ 16928864 (+)
LOC118966008 NA coding downstream 16898 17202617 ~ 17222400 (+)
LOC118966176 NA coding downstream 55151 17240870 ~ 17242550 (+)
LOC118966167 NA coding downstream 68547 17254266 ~ 17265417 (+)
LOC118966009 NA coding downstream 80311 17266030 ~ 17269034 (+)
LOC110532942 LOC106577806 coding downstream 106751 17292470 ~ 17305629 (+)
G776126 NA non-coding upstream 20056 17123414 ~ 17123957 (+)
G776144 NA non-coding upstream 28216 17115584 ~ 17115797 (+)
G776143 NA non-coding upstream 28603 17114969 ~ 17115410 (+)
G776142 NA non-coding upstream 29114 17114512 ~ 17114899 (+)
G776136 NA non-coding upstream 45843 17097916 ~ 17098170 (+)
G776459 NA non-coding downstream 58514 17244233 ~ 17244440 (+)
G776496 NA non-coding downstream 90721 17276440 ~ 17276641 (+)
G776508 ylat1 non-coding downstream 120062 17305781 ~ 17315579 (+)
G775945 NA other upstream 460522 16683194 ~ 16683491 (+)
LOC110532939 NA other upstream 801203 16315734 ~ 16342810 (+)
LOC110532936 LOC106577844 other upstream 893149 16233342 ~ 16250864 (+)
G775306 NA other upstream 956563 16186276 ~ 16187450 (+)
G775142 NA other upstream 1277305 15866089 ~ 15866708 (+)
G776487 NA other downstream 194906 17380625 ~ 17394121 (+)
G776818 LOC106600668 other downstream 472478 17658197 ~ 17659145 (+)
G777111 NA other downstream 816170 18001889 ~ 18002182 (+)
G777113 NA other downstream 817548 18003267 ~ 18005668 (+)

Expression


Co-expression Network