tm4sf5 (tm4sf5)


Basic Information

Item Value
gene id tm4sf5
gene name tm4sf5
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 17364983 ~ 17373648 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614960.2
CACACATGGGCAGGTATCAAAGGGCAATTCTAGAATTGACTCCTGattttgttctgttctgtttagTTCCATTCCACAAGCCGGCAAGGGACCTGTGTTCCGCTTCCAGGGGTCTACACGAAGAACTGAAGGGCTGAAGAGAAAGAGACGATTTATTGTCCAGCACAGTGGAATATACTGGACACAGTGGCTCCTGAGACCAACAACAGCCCTGTCATCTCAGCCTCTTCttcctcctgctgtgtgtgtcagtctgtcttgACCGTGAAGTCTTTTCCCCTCCTCTTTTCTATCTACCATCTCTTCTTTAGTCTGGGTCTACCCTCCACTGTCTCGGTCTCTGTCATACCCTAACTGCAGTATCACTGAGCTATCTGGTGACGGAGTAAAGACAGTATGTGTTGCACTGGGAAGTGTTCTCGTCTGGTGGGCCTGATCCTGTTGCCCTCGGCGTTCGCCTGCATCATCTCCAACATCCTCCTGTTCTTCCCCGACGGAAAGCAGCAGGACAGCAGTCATGTCTCCCTGCAGGTCTGGCTCATGGGCGGCCTCATCGGAGGGGGAATATTCATGCTGTGCCCCAGCTGTTCGGCTATCAGGGCCGGGGGCAAGGGTTGCTGTGGAAATGGTTGCTGCGGAAACCGTTGCAGAATGCTGAACTCTGTCTTCTCGGCTGCTTTTGGTTTGGTCGGAGCTATCTACTGCACTAGTGTCTCTTCTGCGGGACTGGCCATTGGACCTAAATGTCAGGTTGCTAGTGGAAAATGGGAATATCCCTTTGAGGACCTACCAGGTGGGAACAGCAGTTACCTGTTTGACCACTCTCTGTGGAACCTGTGTGTGATCCCTGCCAATGCGGCCCTGTGGCACCTGGTCCTCTTCTCCATCACGCTGGGCCTGGGGGGCCTGCAACTCATCCTCTGTGGTATCCAGGTGGTCAACGGCTGCATCGGCTGCTTCTGTGGGGACTGCCGTGATGACAAGGAGGATGATGGTGGattgtgagatggagagagagaagaagtagaGAGGACTGCCCTGCAATGCCACAGCCTATTTTCATGACgactagtgctgagcgattagtgctttttcaGGTCGGTTCAGTTTTGGGTTCGATTATTAAAAATGATCACGGTTTTTGATTTTGCGTTCGATTATATAATACACTATACGTTATgtgtgttgaatgctgtaacaacacagaataaaacatttaatacaaGTCCCATGGTGGTAGTGACACTCctttactgcttatcacttattaaccataatttattcacattactttactttatGACttcattatttcattccaagtcagttcagttcaggcttgatctgatttaatctctacagaaactgcacattgagctcacagaaaagaaccgaactaaatggaattcaaatcATTTAACCAACGTCTTTCGATAAgttgttttaaaaaaacaaaaaaataaccaACATTTTGGTTAATCGCTCAGTACTACTGATGACATACCAGCACCAGGATTGCCAATCACTTACTacacaacttttttttaaagtgccTATCTGCCAGGAGTTTTCCCTTTTGTGTTTGAAGCATATTGTCTACTTTTGATATGTTCAAATCATGCCAGTGTGCCATATCAATCATAGCCATTGTAGTTCTTTAATCTCAAAACTGCCATGTCATTGTTGTAACTCTTGCTTCTGTTTCACGTGTTGCCCATGGAAACATCATACAGTACGTCATCTGAGGATTCCTCAGGAGTTTCTCAAGTTATTTTCCATTCTTTATTTCATTTCTTTTAAGCAACCATTTCTTTAACATGatcttttgtatatatttttttgtataatCACATACGTCAAAACAATacaaataagcaataaaactttTGGGAAATTA

Function

symbol description
tm4sf5 Acts upstream of or within skeletal muscle fiber development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including gut; myotome; neural tube; notochord; and trunk. Orthologous to human TM4SF5 (transmembrane 4 L six family member 5).

NR:

description
transmembrane 4 L6 family member 5

GO: NA

KEGG:

id description
K24920 TM4SF5; transmembrane 4 L6 family member 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614960.2 True 1897 mRNA 0.44 6 17364983 17373648
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110531645 LOC106577780 coding downstream 25850 17330334 ~ 17339133 (-)
LOC110531643 LOC106577781 coding downstream 37369 17321431 ~ 17327614 (-)
LOC110531642 ylat1 coding downstream 47272 17306290 ~ 17317711 (-)
LOC110531640 LOC106577784 coding downstream 284191 17076930 ~ 17080885 (-)
LOC110532941 LOC106577784 coding downstream 300732 17050749 ~ 17064251 (-)
tmem88b LOC106577776 coding upstream 16442 17390090 ~ 17397228 (-)
LOC110532943 LOC106577805 coding upstream 28730 17402378 ~ 17547902 (-)
LOC118966010 NA coding upstream 550422 17924070 ~ 17925788 (-)
LOC110531650 LOC106577756 coding upstream 632985 18006633 ~ 18129483 (-)
si:dkey-111f13.5 LOC106577757 coding upstream 756559 18130207 ~ 18138722 (-)
G776655 NA non-coding downstream 14852 17349505 ~ 17350131 (-)
G776639 NA non-coding downstream 62519 17301809 ~ 17302464 (-)
G776635 NA non-coding downstream 67627 17297052 ~ 17297356 (-)
G776620 NA non-coding downstream 93876 17270823 ~ 17271107 (-)
G776446 NA non-coding downstream 140990 17223789 ~ 17223993 (-)
G776701 NA non-coding upstream 40954 17414602 ~ 17415162 (-)
G776709 NA non-coding upstream 65018 17438666 ~ 17438944 (-)
G776715 NA non-coding upstream 85523 17459171 ~ 17466795 (-)
G776719 NA non-coding upstream 103435 17477083 ~ 17481116 (-)
G776642 NA other downstream 10636 17345478 ~ 17354347 (-)
G776652 NA other downstream 44610 17319615 ~ 17320373 (-)
G776461 NA other downstream 119186 17245434 ~ 17245797 (-)
G776355 NA other downstream 339170 17025380 ~ 17025813 (-)
G776340 LOC106577790 other downstream 350298 17010012 ~ 17014685 (-)
G776714 NA other upstream 85029 17458677 ~ 17463822 (-)
G776762 NA other upstream 219824 17593472 ~ 17594666 (-)
G776812 LOC106566110 other upstream 281946 17655594 ~ 17655980 (-)
G776814 LOC106600668 other upstream 282340 17655988 ~ 17656325 (-)

Expression

tm4sf5(tm4sf5) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 300.
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tm4sf5(tm4sf5) Expression in each Bioproject

Bar chart with 20 bars.
tm4sf5(tm4sf5) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20000.
End of interactive chart.

Co-expression Network