si:dkey-111f13.5 (LOC106577757)


Basic Information

Item Value
gene id si:dkey-111f13.5
gene name LOC106577757
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 18130207 ~ 18138722 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987498.1
GTGTCTTATtttatatataatatgttgtatttatttttcttcatAGTTATTTAATATAAGCTCTTTTGGCAAAGTGAGAAGACTATGTAGATTTTACATTTCTGAAAAAGATCTTAGTCAAATGCCTTTCGAGCATACCCTCATTACAAATTCGCACTGTAAAACCGCGGGTATAAAACCCCTGGTATAAGTAGAGCGAAGTGCCAGGTTGAAGAGCCGcacctttttgttgttgtgcgcGTTGCTTAGCGaccgttttagaataagggaCGAGCCTAGCGAGAGAAGTGGGGtgcgagacagaaagagagcgtgAAACAGAAAGGGTGAGCGGGCGTTAGTGCAGAAAGAGAGGAGTGAATCACTGGTGTGGTCTTCAGTGTCAACAGTGGGTATTCCAGTAGCAGTCAAACAGAGCATGTCTGACATGGGGCCTCTACAGAGGATGCTGAACCGGACCAGCCTCTCCACACAGAggctcctccacacacacatcctggGTCTGGGAGAGTATTTTCTCCCTCCGTCCACCTCTACAAGCACCAGCCAGGACCCAGGGCcatcctctttctccccccacaccGAGCAGCCAGAGGTGGGGGCCACACAGGGGGAGTCCCCCTGGGTGGCAGTATTTCTGCAGAGGGCAGAGGAGGATAAAGAGAAGTCACTGAAACAACAGGAAGAGTGTCTGCAGGTGTGCTTCAAGGAGGCCATATTGGCAAGTGAGAGGCTGGAGGCCGAACAGAGGCAGGGGGAGCGGGTAGAGCAGCAGGCCCAGTTTGCGGAGCGCTGTGTGGGGCTGCGGGAGGAGATCGAGAGGGAGATGAGGCTGGCGGTGGAGGAGACCTGCGGAAGGATGAGGGCTGAGatgcagagagaggtggaagaggagagacagagagatgtagaggcCATGGAGGCAAAAGTACAGgAGAATGTGAAGAGGCTTGTTCGGGaaacagaggtgtgtgtgcgACAGCAGTGTGAAAGAGAGGCACAGAAGGACCTACAGATTCTCCAGGACAGACATACTGTGGAACTCGCTCTAATGCAAAGCCGgTACAGGCAGCTGGAGCAGGGTCTGGCCAGAGTCacaggggagaggatgagatATGAGACAGAGTTTAAGaggtTACAGTGTAGTTACAGACAGTTTGTGGATCTGACCGagtcctccctccactctgactACCTGCTGAAGCTCCGTCGCCTGGGCAGAGAACCTGGCTATACAGACGTGGCGGTCCAGACGGATGATGTCATCAACACACAACACTTTACCTGATGATGCACAGACATCTACTTGCTACCTACAGCTATAATATTGCTGTTGCCTGTgtgcacagatctaggatcagattattaTTCCCCATCCTGATATTAACTATTATGTGGAAGAATTCAACACTAACATTAGATCAATGTTTAGGAGCAACTTCATCCAACTCCTTACCAGTTGAACTCACAGATGCCTCTCTGGTCTGTCATCATCAGGAATGTGTCCATATAGGGTATGAAAGTCAAATGTATTCGGCAATAAACTGATACCTTTTTAATATGTTGTCTTATCTTATAATTTTAGTTTAATCTGCTCAGAGAATGTATACAAGCTTATTTCAGAACCAAGAAATTAGCATACATTTTGTTAGATCATGTTCATATCgtcatccaggctgtatcacaaccggacgtgattggg
>XM_036987497.1
GGCGTTCAGCCCGTGCCAGTCTGTGTACGCCTGTGGCTCCTTCTCCCGCACCGCAGGCCTCTACTCCTGCCAGGACGGCTCTCTGCTGGTTCTGCTGCCACCCAGGCACCACGGGGGCATCACACACCTCGCCTTCTCCCCCGACGGACACTACCTGTACACTGGCGGGCGCAAGGACCCAGAGATTCTGTGCTGGGATCTGAGAGACCCGGGCAAGGTTCTGTTCTGGAAAGTAGCCCTCATGGGGACTGCACCAACGGCATCAGtgtcCACCCCTTCGTGCCGTTGCTGGTGTCAACCAGCAGGCAGTGCCAGTTCCTCGACCCGGGGGACAGTAGCGACGGAGACTCCTTCGACTCGTGTTCAGAGGGTGATATTGTGATATCACCAACCCCAGAGGTCAGACAGGACAACGCCCTGACTCTGTGTTGGGTCGGACCACTCAGCCCAGCCAGCGAGGGGGGGCAGGAGGAACGAGCACCAATGgtggtgattgattgattgattgatggagtAGCCCAACTCAAACCCCTCTCCTCAGGACTGAACCAAATGCAACTTCGAACTGCCACTGAGTGAAGGTTACTACAATATTGGGAGTACTTTTTCTGTTGAGTATGCAAACCAGTGTGTTGAGTCCCTTGGATTCAGCGAACAACAGTTTCCCCGGTCTCGAAGCCAAGCGATTCAACATGACGCTCAGTAGAGGATTTACTGCGCACTGACTCTTACGGGTGGATTTGCTGTCTGTCCAAGAATTGGATTGAATAAGGAGCATGTCTGACATGGGGCCTCTACAGAGGATGCTGAACCGGACCAGCCTCTCCACACAGAggctcctccacacacacatcctggGTCTGGGAGAGTATTTTCTCCCTCCGTCCACCTCTACAAGCACCAGCCAGGACCCAGGGCcatcctctttctccccccacaccGAGCAGCCAGAGGTGGGGGCCACACAGGGGGAGTCCCCCTGGGTGGCAGTATTTCTGCAGAGGGCAGAGGAGGATAAAGAGAAGTCACTGAAACAACAGGAAGAGTGTCTGCAGGTGTGCTTCAAGGAGGCCATATTGGCAAGTGAGAGGCTGGAGGCCGAACAGAGGCAGGGGGAGCGGGTAGAGCAGCAGGCCCAGTTTGCGGAGCGCTGTGTGGGGCTGCGGGAGGAGATCGAGAGGGAGATGAGGCTGGCGGTGGAGGAGACCTGCGGAAGGATGAGGGCTGAGatgcagagagaggtggaagaggagagacagagagatgtagaggcCATGGAGGCAAAAGTACAGgAGAATGTGAAGAGGCTTGTTCGGGaaacagaggtgtgtgtgcgACAGCAGTGTGAAAGAGAGGCACAGAAGGACCTACAGATTCTCCAGGACAGACATACTGTGGAACTCGCTCTAATGCAAAGCCGgTACAGGCAGCTGGAGCAGGGTCTGGCCAGAGTCacaggggagaggatgagatATGAGACAGAGTTTAAGaggtTACAGTGTAGTTACAGACAGTTTGTGGATCTGACCGagtcctccctccactctgactACCTGCTGAAGCTCCGTCGCCTGGGCAGAGAACCTGGCTATACAGACGTGGCGGTCCAGACGGATGATGTCATCAACACACAACACTTTACCTGATGATGCACAGACATCTACTTGCTACCTACAGCTATAATATTGCTGTTGCCTGTgtgcacagatctaggatcagattattaTTCCCCATCCTGATATTAACTATTATGTGGAAGAATTCAACACTAACATTAGATCAATGTTTAGGAGCAACTTCATCCAACTCCTTACCAGTTGAACTCACAGATGCCTCTCTGGTCTGTCATCATCAGGAATGTGTCCATATAGGGTATGAAAGTCAAATGTATTCGGCAATAAACTGATACCTTTTTAATATGTTGTCTTATCTTATAATTTTAGTTTAATCTGCTCAGAGAATGTATACAAGCTTATTTCAGAACCAAGAAATTAGCATACATTTTGTTAGATCATGTTCATATCgtcatccaggctgtatcacaaccggacgtgattgg

Function

NR:

description
UPF0430 protein CG31712-like

GO: NA

KEGG:

id description
K23314 WRAP53, TCAB1; telomerase Cajal body protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987498.1 False 1702 mRNA 0.48 7 18130207 18136898
XM_036987497.1 True 2059 mRNA 0.53 10 18130208 18138722

Neighbor

gene id symbol gene type direction distance location
LOC110531650 LOC106577756 coding downstream 724 18006633 ~ 18129483 (-)
LOC118966010 NA coding downstream 204419 17924070 ~ 17925788 (-)
LOC110532943 LOC106577805 coding downstream 582305 17402378 ~ 17547902 (-)
tmem88b LOC106577776 coding downstream 732979 17390090 ~ 17397228 (-)
tm4sf5 tm4sf5 coding downstream 756559 17364983 ~ 17373648 (-)
LOC110531652 NA coding upstream 9583 18148305 ~ 18154722 (-)
LOC110531653 LOC106577760 coding upstream 16120 18154842 ~ 18188576 (-)
LOC110531655 LOC106577763 coding upstream 52129 18190851 ~ 18200944 (-)
LOC110532944 NA coding upstream 97500 18236222 ~ 18245095 (-)
LOC110531659 LOC106577767 coding upstream 145006 18283728 ~ 18298817 (-)
G778132 NA non-coding downstream 10718 18119225 ~ 18119489 (-)
G778131 NA non-coding downstream 11151 18118836 ~ 18119056 (-)
G778129 NA non-coding downstream 19571 18110421 ~ 18110636 (-)
G778128 NA non-coding downstream 21733 18108129 ~ 18108474 (-)
G778125 NA non-coding downstream 25018 18104973 ~ 18105189 (-)
G778169 NA non-coding upstream 83858 18222580 ~ 18222814 (-)
G778171 NA non-coding upstream 89156 18227878 ~ 18248665 (-)
G778207 NA non-coding upstream 185240 18323962 ~ 18324384 (-)
G778210 NA non-coding upstream 189048 18327770 ~ 18327989 (-)
G776822 NA other downstream 469724 17659690 ~ 17660483 (-)
G776820 NA other downstream 470804 17659016 ~ 17659403 (-)
G776814 LOC106600668 other downstream 473882 17655988 ~ 17656325 (-)
G776812 LOC106566110 other downstream 474227 17655594 ~ 17655980 (-)
G776762 NA other downstream 535541 17593472 ~ 17594666 (-)
G778216 NA other upstream 216719 18355441 ~ 18358103 (-)
G780209 NA other upstream 1678969 19817691 ~ 19824571 (-)
LOC110531704 LOC106608762 other upstream 1933274 20022194 ~ 20075490 (-)
LOC110531717 LOC106577635 other upstream 2163356 20302051 ~ 20324316 (-)
LOC110531730 adgrl3 other upstream 2792238 20930960 ~ 21272646 (-)

Expression


Co-expression Network