LOC110531656 (pop7)


Basic Information

Item Value
gene id LOC110531656
gene name pop7
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 18187738 ~ 18190442 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614973.2
GTTTACATCCAAGGTTCAAATGACACGAGATATGGCGAAGAGGGGCGGAGTGCCCGCCGTGTGTTAATCGCGCACCCCCTCGCCAATCCGCCGCCCAAGCTACAACTAACGTTACCTCGCTGCTTACTTTGGCCTTCAACAACCTGAGCAAAACAAACCAATAAAGCAGCAATGTGCTCCATCTCACCCTTCCCTGTCTCTGACTCACTTGTAATGGCAGAACCACGCAGCCTTATCTCCGCCTCCATCCCCCAGACACCCCCTGGCATCATCATGCCCCCAGCCGACGGCAGCGGCACAGGGGTGATGATGGACCCCATAGAGTACACCCTACGCAAGCGTCTCCCCAGGAAGCTGCCCAAGCGCCGCAACGACGTGTACGTCAACATGAAGACAGACTTCCGGGCCCAGTTGGCCCGCTGCCAAAAGCTGCTCGAAGGAGGAGGCCACGGAGAGATCCGTGTCCACGGTCTGGGCCTGGCCATCAACAGGGCCATCAACATTGCCCTGCAGCTCCAGGCCAGTAGCCAGGGGGCGCTACAGCTGGAAGCCAACACGTCTACAGTGGAGCTGCTGGACGATATGGAGCCTGAGGATCCTGACGAGGCGGGGGAACCCATGGCGCGCTCCCGGAATAACTCTGCTATTCATATCAAAGTGTTCTACCCAGACTCACAGTGACCCGAAACACAACTATCGTCCCTAGCTTGGATATGGCTAACTACCTCCAttgatgtgttgtctgtaatATCCTACTGATGGAGTCGAGTCATATCAGGGGTACACCTATTCCATCCACCTGCAGTGGCTAAGACTGACAGTGTTGTTTAGATGCAGGGATAATTATCTATCCACTATTGGAATCTCTTTCTCAGTTTTGTTACATATTTTGTCATGCATGATGTCAGTCAGAGCAGTGCATTTGTCAGTATCAAGAGTGTGTTGTTTCATGGCATCGTCATTTCCAGACAATCCCTTACTGCCTGAAACAAACTCCCATAGGAAATGGGACAGACCAGACTAAGACCAACTCATACAAGCTACAATACACCTGTTCCCCATGTGGGAATATGTTTAATCTCTGAAAAGGATGTGGATTTGAATCTTTCATTAAATGTATTTGTTACACGTTTTTTGTTTCTTGTGGTAACACTGAATATTATTTTGACCATGGGAAATGAGTAATACTTCAGTCATTTCTGGTCAAATTGAAGTTTACAAACCAAGTCTGGGCATGAGACATGCCAATCATATGTTTTACCTACCGATTCCATACATGGAAATCTAGCTCTGTGGAAGAGTCAATAAacgttatttttttatttga
>XM_021614974.2
AACGTTGTCATTATCATATGATTACTTCCGGGGAACCTTTGTGTTTCCGGACGTTCATAGTCAGGTTGAAAGTCTCCATCCAGCACGATAGACAAAAAATAAGAATAATTTGGTTGCAAACAGTAGTTGGAGTGCTCCATCTCACCCTTCCCTGTCTCTGACTCACTTGTAATGGCAGAACCACGCAGCCTTATCTCCGCCTCCATCCCCCAGACACCCCCTGGCATCATCATGCCCCCAGCCGACGGCAGCGGCACAGGGGTGATGATGGACCCCATAGAGTACACCCTACGCAAGCGTCTCCCCAGGAAGCTGCCCAAGCGCCGCAACGACGTGTACGTCAACATGAAGACAGACTTCCGGGCCCAGTTGGCCCGCTGCCAAAAGCTGCTCGAAGGAGGAGGCCACGGAGAGATCCGTGTCCACGGTCTGGGCCTGGCCATCAACAGGGCCATCAACATTGCCCTGCAGCTCCAGGCCAGTAGCCAGGGGGCGCTACAGCTGGAAGCCAACACGTCTACAGTGGAGCTGCTGGACGATATGGAGCCTGAGGATCCTGACGAGGCGGGGGAACCCATGGCGCGCTCCCGGAATAACTCTGCTATTCATATCAAAGTGTTCTACCCAGACTCACAGTGACCCGAAACACAACTATCGTCCCTAGCTTGGATATGGCTAACTACCTCCAttgatgtgttgtctgtaatATCCTACTGATGGAGTCGAGTCATATCAGGGGTACACCTATTCCATCCACCTGCAGTGGCTAAGACTGACAGTGTTGTTTAGATGCAGGGATAATTATCTATCCACTATTGGAATCTCTTTCTCAGTTTTGTTACATATTTTGTCATGCATGATGTCAGTCAGAGCAGTGCATTTGTCAGTATCAAGAGTGTGTTGTTTCATGGCATCGTCATTTCCAGACAATCCCTTACTGCCTGAAACAAACTCCCATAGGAAATGGGACAGACCAGACTAAGACCAACTCATACAAGCTACAATACACCTGTTCCCCATGTGGGAATATGTTTAATCTCTGAAAAGGATGTGGATTTGAATCTTTCATTAAATGTATTTGTTACACGTTTTTTGTTTCTTGTGGTAACACTGAATATTATTTTGACCATGGGAAATGAGTAATACTTCAGTCATTTCTGGTCAAATTGAAGTTTACAAACCAAGTCTGGGCATGAGACATGCCAATCATATGTTTTACCTACCGATTCCATACATGGAAATCTAGCTCTGTGGAAGAGTCAATAAacgttatttttttatttga

Function

symbol description
pop7 Predicted to enable nucleic acid binding activity and ribonuclease P activity. Predicted to be involved in RNA phosphodiester bond hydrolysis, endonucleolytic and tRNA processing. Predicted to be located in nucleolus. Predicted to be active in nucleus. Orthologous to human POP7 (POP7 homolog, ribonuclease P/MRP subunit).

NR:

description
ribonuclease P protein subunit p20-like isoform X1

GO:

id name namespace
GO:0008033 tRNA processing biological_process
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic biological_process
GO:0005634 nucleus cellular_component
GO:0004526 ribonuclease P activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K14527 RPP20, POP7; ribonuclease P/MRP protein subunit RPP20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614973.2 False 1327 mRNA 0.49 2 18187738 18190442
XM_021614974.2 True 1285 mRNA 0.47 2 18188753 18190442

Neighbor

gene id symbol gene type direction distance location
LOC110531644 mettl3 coding upstream 841487 17339272 ~ 17346251 (+)
LOC110532942 LOC106577806 coding upstream 882109 17292470 ~ 17305629 (+)
LOC118966009 NA coding upstream 918704 17266030 ~ 17269034 (+)
LOC118966167 NA coding upstream 922321 17254266 ~ 17265417 (+)
LOC118966176 NA coding upstream 945188 17240870 ~ 17242550 (+)
LOC110531658 LOC106577765 coding downstream 60490 18250932 ~ 18256403 (+)
LOC110531660 LOC106608810 coding downstream 110926 18301368 ~ 18320759 (+)
LOC110531663 LOC106577697 coding downstream 450213 18640655 ~ 18648675 (+)
LOC110531664 LOC106577696 coding downstream 465735 18656177 ~ 18673318 (+)
LOC110531665 LOC106577695 coding downstream 527923 18718365 ~ 18833482 (+)
G777206 NA non-coding upstream 12886 18174555 ~ 18174852 (+)
G777201 LOC106577760 non-coding upstream 17253 18169946 ~ 18170485 (+)
G777180 NA non-coding upstream 51088 18136247 ~ 18136650 (+)
G777179 NA non-coding upstream 56987 18130372 ~ 18130751 (+)
G777178 NA non-coding upstream 58272 18127912 ~ 18129466 (+)
G777235 NA non-coding downstream 37093 18227535 ~ 18227756 (+)
G777258 LOC106577766 non-coding downstream 70209 18260651 ~ 18287707 (+)
G777283 NA non-coding downstream 132962 18323404 ~ 18323939 (+)
G777285 NA non-coding downstream 138063 18328505 ~ 18328795 (+)
G777295 NA non-coding downstream 164838 18355280 ~ 18356183 (+)
G777165 NA other upstream 79256 18108019 ~ 18108482 (+)
G777113 NA other upstream 182070 18003267 ~ 18005668 (+)
G777111 NA other upstream 185556 18001889 ~ 18002182 (+)
G776818 LOC106600668 other upstream 528593 17658197 ~ 17659145 (+)
G776487 NA other upstream 793617 17380625 ~ 17394121 (+)
G777396 NA other downstream 309172 18499614 ~ 18500018 (+)
LOC110531694 LOC106577663 other downstream 1627246 19817663 ~ 19824606 (+)
LOC110531697 NA other downstream 1685826 19876221 ~ 19914138 (+)
LOC110531703 LOC106577651 other downstream 1819074 20009183 ~ 20090543 (+)

Expression


Co-expression Network